genome.fa.s9.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  113  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37182786--37182842	5	11.0	5	75	20	55	3	17	1	77	1.00
37182786--37182842	16	3.7	14	82	15	60	3	17	1	77	1.00
37182786--37182853	21	3.2	21	76	15	61	2	17	2	76	1.04
37184774--37184798	13	1.9	13	100	0	50	36	16	32	16	1.90
37185202--37185302	30	3.4	30	71	4	87	31	14	26	26	1.95
37186156--37186216	30	2.0	30	83	0	77	27	24	8	39	1.84
37189865--37189922	28	2.1	28	100	0	116	36	29	3	31	1.74
37190803--37190863	30	2.0	30	83	0	77	27	24	8	39	1.84
37193121--37193147	8	3.4	8	100	0	54	48	0	25	25	1.52
37194914--37195010	30	3.2	30	75	2	97	27	26	16	28	1.97
37200446--37200493	20	2.4	20	67	0	51	33	18	27	20	1.96
37202084--37202122	18	2.1	19	85	4	53	7	23	2	66	1.30
37202086--37202189	48	2.2	49	79	8	115	12	27	0	58	1.40
37202140--37202189	18	2.8	18	87	0	73	14	28	0	58	1.37
37202115--37202196	24	3.4	24	77	0	101	12	26	0	60	1.31
37202266--37202312	17	2.6	17	78	18	51	4	25	4	65	1.29
37207524--37207620	30	3.2	30	77	2	106	28	15	26	28	1.96
37208013--37208056	18	2.4	18	84	0	61	13	31	0	54	1.39
37208007--37208074	30	2.3	30	86	0	91	11	27	0	60	1.32
37209050--37209083	10	3.5	10	84	8	52	8	11	2	76	1.12
37210567--37210601	10	3.5	10	88	0	52	40	22	22	14	1.90
37210564--37210611	20	2.4	20	71	0	51	33	18	27	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37217703--37217772	27	2.6	27	95	2	113	31	28	12	27	1.93
37217703--37217800	28	3.5	28	90	2	135	31	28	13	26	1.94
37221440--37221541	50	2.0	50	98	0	195	35	16	11	36	1.86
37223427--37223513	40	2.2	40	85	4	113	33	26	18	21	1.96
37224290--37224362	36	2.0	36	100	0	146	31	21	0	46	1.52
37224294--37224370	36	2.1	36	95	0	136	31	22	0	46	1.52
37233917--37234098	40	4.6	40	90	6	282	28	26	21	23	1.99
37237774--37237798	13	1.9	13	100	0	50	8	0	24	68	1.16
37249084--37249244	69	2.3	70	77	5	164	23	19	22	33	1.97
37251668--37251704	14	2.8	13	88	11	58	21	5	10	62	1.48
37255438--37255606	47	3.6	46	74	7	171	30	26	18	23	1.98
37255391--37255652	93	2.8	93	91	1	418	30	27	19	23	1.98
37255384--37255654	46	5.8	46	72	11	203	30	27	19	22	1.98
37258831--37259254	49	8.8	49	96	1	743	32	8	29	29	1.86
37259373--37259451	37	2.1	37	90	0	122	24	18	31	25	1.98
37261563--37261591	15	1.9	15	100	0	58	68	13	6	10	1.37
37264388--37264611	46	4.8	46	80	9	222	29	27	20	22	1.99
37278551--37278589	21	1.9	20	89	5	60	33	0	20	46	1.51
37283770--37284071	153	2.0	152	86	3	419	20	26	29	23	1.99
37284363--37284422	30	2.0	30	96	0	111	28	13	8	50	1.70
37287776--37287883	45	2.4	45	87	3	148	27	28	23	20	1.99
37288693--37288830	47	3.0	46	89	5	194	43	13	13	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37293266--37293489	40	5.6	40	92	3	337	24	21	26	26	2.00
37295175--37295202	13	2.2	13	100	0	56	78	7	14	0	0.95
37296006--37296033	2	14.0	2	100	0	56	0	0	50	50	1.00
37296603--37296652	21	2.3	21	89	6	73	14	26	26	34	1.94
37296614--37296677	21	3.0	21	86	0	83	14	23	26	35	1.93
37296839--37296879	19	2.2	19	87	12	59	46	0	24	29	1.53
37302972--37303044	34	2.2	34	85	2	94	30	21	20	27	1.98
37307646--37307970	68	4.9	67	72	14	239	26	29	13	29	1.94
37314843--37314926	43	2.0	43	90	0	132	28	29	21	20	1.98
37325663--37325754	43	2.1	43	82	7	107	27	28	17	27	1.98
37331711--37331745	12	2.8	12	91	4	52	65	0	11	22	1.24
37339323--37339493	48	3.6	48	78	7	204	26	18	27	27	1.98
37339278--37339502	97	2.3	97	86	0	308	27	19	26	27	1.99
37357451--37357485	18	1.9	18	94	0	61	14	40	8	37	1.76
37377760--37377807	20	2.4	20	96	0	87	35	8	12	43	1.73
37380539--37380596	21	2.8	21	79	10	66	20	29	8	41	1.82
37384196--37384293	34	3.0	32	78	11	92	27	26	23	22	1.99
37384196--37384281	34	2.6	35	81	9	99	25	27	24	22	1.99
37385789--37385890	28	3.5	28	76	15	89	27	25	21	25	1.99
37385791--37385862	33	2.1	34	87	2	110	26	26	22	25	2.00
37386225--37386304	27	3.0	27	83	7	67	28	20	17	33	1.95
37386240--37386314	27	2.8	27	89	0	114	25	20	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37394995--37395085	29	3.2	28	80	7	103	27	14	30	27	1.95
37395008--37395090	28	2.9	29	76	18	93	27	15	30	26	1.96
37402460--37402502	16	2.7	16	81	0	50	53	16	20	9	1.70
37402726--37402832	29	3.7	29	81	7	121	25	14	31	28	1.95
37402726--37402837	57	1.9	58	80	8	131	25	15	31	28	1.95
37412912--37413089	98	1.8	97	80	8	218	23	26	20	28	1.99
37413012--37413184	46	3.7	46	80	3	168	24	28	17	29	1.98
37413844--37413882	20	2.0	20	85	10	53	35	20	0	43	1.52
37417732--37417902	85	2.0	85	97	0	324	41	9	15	33	1.79
37424538--37424718	40	4.5	41	76	9	158	33	23	14	28	1.94
37428594--37428666	23	3.2	22	77	14	85	46	19	13	20	1.83
37430565--37430631	33	2.0	33	97	0	125	32	19	8	38	1.83
37432128--37432159	13	2.5	13	94	0	55	43	3	21	31	1.68
37442190--37442231	21	2.0	21	100	0	84	38	14	19	28	1.90
37459220--37459271	26	2.0	26	100	0	104	38	23	11	26	1.89
37459566--37459603	16	2.4	16	95	0	67	42	18	5	34	1.73
37460043--37460078	3	12.0	3	100	0	72	66	0	0	33	0.92
37468564--37468636	36	2.0	36	97	0	137	21	9	8	60	1.54
37469292--37469331	21	1.9	21	94	0	71	7	22	7	62	1.47
37469322--37469377	28	2.0	28	100	0	112	35	21	10	32	1.88
37473985--37474024	19	2.1	19	100	0	80	37	22	10	30	1.87
37487001--37487059	32	1.9	32	83	10	79	54	5	0	40	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37491421--37491486	22	3.1	22	76	12	84	54	4	13	27	1.58
37491423--37491504	41	2.0	42	90	7	132	52	6	13	28	1.64
37501285--37501451	40	4.2	40	84	5	189	25	26	22	25	2.00
37501308--37501452	40	3.7	39	86	3	193	24	26	22	25	2.00
37503646--37503875	40	5.8	40	91	2	331	23	22	28	26	1.99
37503646--37503901	40	6.4	39	90	4	322	24	22	27	25	2.00
37506159--37506201	22	2.0	22	81	9	52	41	9	37	11	1.74
37517034--37517158	42	3.0	42	77	11	155	28	18	24	28	1.98
37522120--37522261	40	3.5	40	94	3	234	22	22	28	26	1.99
37522120--37522293	80	2.2	79	85	7	228	24	21	27	26	2.00
37522520--37522563	22	2.0	21	83	16	54	31	18	13	36	1.90
37528570--37528620	20	2.7	19	82	14	54	41	0	21	37	1.54
37529277--37529449	48	3.7	45	75	15	154	26	19	31	22	1.98
37529462--37529572	49	2.3	49	80	3	125	29	19	27	22	1.98
37533514--37533669	49	3.5	42	77	9	125	28	16	23	30	1.96
37533570--37533679	49	2.3	49	90	1	177	25	15	24	34	1.95
37534684--37534777	43	2.2	43	88	3	138	13	25	32	27	1.94
37536752--37536788	17	2.2	17	90	0	56	43	5	10	40	1.63
37545238--37545341	43	2.4	43	100	0	208	22	15	36	25	1.93
37545323--37545396	29	2.6	29	89	4	105	25	16	32	25	1.96
37562420--37562784	97	3.7	97	90	5	547	32	7	30	30	1.85
37562420--37562788	51	7.6	49	88	6	520	32	7	30	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37562907--37562985	37	2.1	37	92	0	131	25	18	30	25	1.98
37576125--37576712	293	2.0	291	94	1	1043	34	11	23	29	1.91
37582149--37582180	13	2.5	13	100	0	64	31	6	21	40	1.78
37582704--37582733	15	2.1	14	93	6	51	13	20	16	50	1.78
37583470--37583512	19	2.3	19	100	0	86	25	0	34	39	1.56
37583975--37584178	53	3.8	53	73	9	173	38	17	25	19	1.93
37587862--37587935	36	2.1	36	92	0	121	45	14	9	29	1.77
37592132--37592185	25	2.2	24	83	9	65	57	3	5	33	1.40
37604466--37604497	16	2.1	15	94	5	55	43	31	12	12	1.80
37605517--37605706	100	1.9	101	86	4	276	31	27	14	26	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284