genome.fa.s9.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  194  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65410829--65410941	27	4.2	27	82	3	120	16	23	23	37	1.94
65410827--65410941	54	2.1	54	87	3	160	16	22	23	37	1.94
65416463--65416515	27	2.0	27	92	7	90	56	11	5	26	1.56
65416472--65416514	14	3.1	14	73	6	52	55	11	4	27	1.55
65417454--65417633	97	1.8	97	83	3	236	45	10	12	32	1.76
65417403--65417710	98	3.2	98	76	5	284	43	10	12	33	1.76
65417431--65417936	98	5.1	95	70	13	238	45	10	11	32	1.75
65417419--65418112	195	3.5	193	80	8	695	44	11	10	33	1.76
65418704--65418767	6	10.7	6	96	0	119	48	15	1	34	1.55
65422656--65422816	80	2.0	80	96	0	295	39	19	13	27	1.89
65424044--65424505	97	4.8	98	70	11	271	45	11	11	31	1.76
65424042--65424505	195	2.4	193	82	5	523	45	11	11	31	1.76
65426993--65427099	56	1.9	57	83	12	141	33	6	1	57	1.35
65427055--65427088	13	2.6	13	95	0	59	32	2	0	64	1.08
65427001--65427088	17	5.3	17	66	16	51	32	5	1	60	1.28
65427708--65427764	29	2.0	29	92	0	96	24	8	8	57	1.57
65431210--65431259	15	3.5	15	82	15	61	24	24	10	42	1.85
65439301--65440278	210	4.7	210	90	1	1398	30	18	21	29	1.97
65441930--65442036	56	1.9	57	83	12	141	33	6	1	57	1.35
65441992--65442025	13	2.6	13	95	0	59	32	2	0	64	1.08
65441938--65442025	17	5.3	17	66	16	51	32	5	1	60	1.28
65442645--65442701	29	2.0	29	92	0	96	24	8	8	57	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65442750--65442776	2	13.5	2	100	0	54	48	0	0	51	1.00
65444044--65444078	18	1.9	18	88	11	54	20	0	5	74	1.02
65446479--65446623	43	3.3	44	78	10	172	28	21	18	31	1.97
65446459--65446602	43	3.3	42	75	10	137	32	24	18	25	1.97
65446459--65446641	87	2.1	88	82	3	237	31	23	17	27	1.97
65446496--65446617	42	2.8	42	81	9	156	32	22	18	26	1.97
65446913--65446953	19	2.2	19	86	4	57	70	4	2	21	1.18
65446879--65446952	31	2.4	32	78	13	84	66	4	2	27	1.23
65456304--65456415	14	7.9	14	71	12	68	36	43	0	19	1.51
65456313--65456376	21	3.0	21	83	4	74	35	46	0	17	1.48
65456706--65456842	41	3.4	39	83	7	168	20	19	21	38	1.93
65456706--65456872	40	4.1	40	82	8	176	20	19	20	38	1.93
65462363--65462404	22	1.9	22	85	9	59	54	7	0	38	1.28
65466911--65467000	14	6.8	13	69	14	51	35	4	1	58	1.25
65466902--65466981	14	5.3	15	70	18	60	37	2	1	58	1.19
65466932--65466981	21	2.5	21	80	6	59	36	4	0	60	1.16
65467073--65467114	20	2.0	20	86	4	57	23	0	7	69	1.13
65489626--65490327	205	3.5	206	87	4	1023	32	17	21	28	1.96
65489626--65490303	197	3.4	198	86	5	921	32	17	21	28	1.96
65492138--65492186	24	2.0	25	88	4	73	38	4	0	57	1.18
65492153--65492217	32	2.0	32	85	5	87	35	4	1	58	1.28
65492146--65492199	25	2.1	26	82	3	65	35	5	0	59	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65492167--65492237	30	2.4	31	83	9	85	33	5	1	59	1.30
65492309--65492350	20	2.0	20	86	4	57	23	0	7	69	1.13
65495419--65495467	3	16.3	3	91	0	80	0	28	0	71	0.86
65498612--65498866	44	5.6	43	73	13	172	29	20	18	31	1.96
65498657--65499050	44	8.6	44	75	10	207	30	20	17	31	1.95
65498697--65498918	51	4.6	50	76	12	198	31	19	16	32	1.94
65498598--65499053	96	4.9	93	78	7	396	29	20	17	33	1.95
65501113--65501160	23	2.1	23	96	0	87	20	22	0	56	1.43
65505001--65505047	19	2.5	20	86	6	62	38	10	25	25	1.88
65527424--65527449	9	2.9	9	100	0	52	69	7	0	23	1.14
65527415--65527440	12	2.2	12	100	0	52	69	7	0	23	1.14
65527509--65527558	21	2.3	22	82	6	66	70	2	10	18	1.25
65527636--65527682	12	3.9	12	77	5	51	68	0	4	27	1.08
65529972--65530024	26	2.0	26	92	0	88	33	9	15	41	1.79
65530708--65530887	97	1.9	97	80	6	213	45	12	10	31	1.77
65533981--65534027	21	2.2	22	92	3	78	21	19	38	21	1.94
65538129--65538167	10	3.9	10	80	12	53	20	7	2	69	1.26
65543322--65543410	5	17.6	5	78	15	78	16	4	0	78	0.91
65543319--65543386	32	2.2	32	87	10	97	14	4	0	80	0.85
65543530--65543639	54	2.0	55	94	1	195	42	36	2	18	1.64
65543530--65543653	54	2.3	54	90	5	178	41	36	2	19	1.64
65545342--65545366	13	1.9	13	100	0	50	36	0	16	48	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65545384--65545422	10	3.9	10	80	12	53	20	7	2	69	1.26
65550528--65550630	25	4.2	23	72	17	57	63	3	4	28	1.33
65550962--65551000	14	2.9	14	84	3	53	66	0	2	30	1.05
65551098--65551144	23	2.0	25	83	8	62	57	6	8	27	1.53
65552988--65553082	47	2.0	47	100	0	190	14	14	40	30	1.87
65555479--65555509	3	10.3	3	100	0	62	67	0	0	32	0.91
65555643--65555682	20	2.0	21	90	5	64	22	10	5	62	1.46
65559006--65559267	125	2.1	127	84	3	332	37	16	12	34	1.85
65559285--65559319	15	2.2	16	90	5	54	65	0	8	25	1.21
65559432--65559484	25	2.2	23	90	6	79	60	0	7	32	1.25
65559578--65559629	15	3.7	14	75	17	54	67	1	5	25	1.23
65559576--65559659	30	2.8	28	79	13	87	65	3	7	23	1.34
65559585--65559637	15	3.3	17	75	17	51	69	1	5	22	1.19
65559804--65559841	15	2.3	18	86	13	55	50	0	15	34	1.45
65560031--65560065	18	1.9	18	88	0	52	71	2	8	17	1.23
65560317--65560342	12	2.2	12	100	0	52	7	0	46	46	1.31
65560636--65560933	41	6.8	41	70	15	211	30	18	16	35	1.93
65560677--65560988	92	3.4	92	84	2	396	30	18	15	35	1.92
65562509--65562562	21	2.6	22	80	8	60	53	5	5	35	1.48
65562746--65562789	19	2.4	19	88	7	65	61	2	0	36	1.09
65562805--65562869	31	2.1	31	100	0	130	53	12	9	24	1.67
65563017--65563059	21	2.0	21	82	8	52	62	2	2	32	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65563814--65563862	25	1.9	26	84	12	66	10	0	42	46	1.37
65563851--65563884	17	2.0	18	88	11	54	5	0	50	44	1.26
65564154--65564262	44	2.5	44	87	0	164	28	25	17	28	1.97
65564419--65564594	77	2.2	77	80	8	196	35	22	13	28	1.92
65564470--65564699	77	3.1	75	84	8	272	35	22	15	27	1.94
65564677--65564706	15	2.0	15	93	0	51	56	10	13	20	1.65
65564604--65564769	90	1.9	88	89	5	262	35	21	16	26	1.94
65564692--65564845	76	2.0	77	91	2	247	31	22	18	28	1.97
65564545--65565029	166	2.9	160	84	7	612	35	21	16	26	1.94
65564865--65565102	73	3.2	73	85	2	309	35	21	16	26	1.94
65565082--65565115	14	2.4	14	95	0	59	58	5	17	17	1.57
65565010--65565196	87	2.2	86	91	2	297	36	17	17	27	1.93
65568186--65568437	72	3.4	72	91	3	414	30	17	17	33	1.94
65568579--65568754	74	2.5	68	85	8	214	28	21	17	32	1.95
65568624--65568836	74	2.7	77	86	7	290	32	21	16	30	1.95
65568794--65568881	44	2.0	45	88	2	133	19	21	21	37	1.94
65568896--65569125	72	3.1	72	81	8	318	33	19	16	30	1.94
65568838--65569107	77	3.6	77	82	7	372	27	19	18	34	1.95
65568838--65569125	149	1.9	149	98	0	558	30	18	17	32	1.95
65568929--65569299	192	1.9	194	83	6	476	33	20	15	30	1.94
65569127--65569299	68	2.5	70	84	4	201	32	22	15	29	1.94
65582107--65582144	11	3.3	12	89	10	62	47	0	52	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65582109--65582152	22	2.0	22	86	8	63	43	0	56	0	0.99
65582658--65582726	35	2.0	35	100	0	138	20	11	50	17	1.76
65582989--65583022	14	2.4	14	90	0	50	58	0	14	26	1.36
65582865--65583084	86	2.5	86	84	3	262	35	17	17	29	1.93
65583635--65583706	36	2.0	36	97	0	135	43	13	26	16	1.86
65591032--65591075	19	2.4	19	88	7	65	61	2	0	36	1.09
65591167--65591232	9	7.7	9	72	14	50	57	4	0	37	1.19
65591167--65591232	11	6.4	11	71	11	50	57	4	0	37	1.19
65591441--65591469	3	9.7	3	100	0	58	65	0	0	34	0.93
65592113--65592146	17	2.0	18	88	11	54	5	0	50	44	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284