genome.fa.s9.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  135  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45000645--45000921	80	3.5	80	86	1	349	40	17	15	26	1.89
45004540--45004764	40	5.6	40	87	3	310	25	23	26	25	2.00
45006777--45006805	12	2.5	12	94	5	51	0	13	0	86	0.58
45007775--45007836	26	2.3	27	88	2	90	37	25	9	27	1.87
45007941--45008054	27	4.2	27	85	4	142	20	23	20	35	1.95
45007940--45008054	54	2.1	54	87	3	160	20	23	20	35	1.96
45011134--45011169	6	6.5	6	81	18	51	0	11	0	88	0.50
45011132--45011169	10	3.6	10	89	10	58	0	13	0	86	0.56
45013864--45014242	47	8.1	47	93	0	589	34	10	29	26	1.90
45014078--45014199	22	5.3	22	65	24	63	33	11	28	26	1.91
45014216--45014398	46	4.0	46	92	0	285	34	8	31	24	1.86
45016304--45016365	26	2.3	27	81	10	74	35	27	11	25	1.90
45016469--45016583	27	4.3	26	81	7	122	18	21	22	37	1.94
45018592--45018666	28	2.6	28	89	6	107	26	12	28	33	1.92
45021346--45021411	33	2.0	33	93	0	114	56	7	7	28	1.55
45026948--45027049	42	2.4	43	86	3	136	31	22	14	31	1.94
45027591--45027615	12	2.1	12	100	0	50	32	8	8	52	1.60
45032885--45032934	25	2.0	25	96	0	91	16	14	30	40	1.87
45035261--45035330	35	2.0	35	97	0	131	21	17	18	42	1.89
45036617--45036653	18	2.1	18	100	0	74	18	16	10	54	1.71
45037063--45037120	30	1.9	31	85	3	82	12	8	18	60	1.57
45037061--45037130	15	4.7	15	72	8	54	10	8	18	62	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45039164--45039362	50	4.0	50	80	1	175	27	18	26	28	1.98
45044712--45044760	23	2.1	24	92	3	82	26	4	14	55	1.57
45069555--45069669	29	4.0	28	86	2	131	26	15	29	27	1.96
45071829--45071970	40	3.6	40	87	2	198	22	21	26	28	1.99
45089601--45089689	42	2.1	42	87	4	126	51	14	6	26	1.67
45089602--45089711	42	2.6	41	80	12	98	52	13	5	28	1.62
45089714--45089753	19	2.2	18	95	4	71	42	15	0	42	1.46
45094375--45094463	42	2.1	42	87	0	124	52	13	5	28	1.62
45094473--45094516	19	2.4	18	92	7	79	45	13	0	40	1.44
45104436--45104483	23	2.1	23	96	0	87	25	14	16	43	1.86
45104634--45104676	20	2.2	20	100	0	86	55	25	0	18	1.42
45104632--45104677	9	4.9	9	89	10	74	56	23	0	19	1.42
45107204--45107261	27	2.1	27	81	12	66	5	20	5	68	1.28
45108322--45108407	42	2.0	42	100	0	172	36	9	24	30	1.87
45114047--45114132	40	2.2	39	87	6	120	30	26	17	25	1.97
45119729--45119910	40	4.6	40	90	2	278	26	25	23	24	2.00
45124764--45125056	131	2.2	130	79	7	313	33	12	13	39	1.83
45126624--45126694	36	2.0	36	100	0	142	47	5	7	39	1.54
45128719--45128760	6	7.3	6	86	7	61	2	14	0	83	0.75
45129194--45129218	11	2.3	11	100	0	50	40	16	8	36	1.77
45139765--45139937	46	3.7	46	79	13	210	21	20	28	29	1.98
45139762--45139932	93	1.8	93	94	0	306	21	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45141369--45141427	30	2.0	30	93	3	102	44	8	3	44	1.51
45146865--45147003	48	2.9	48	86	1	199	32	13	22	31	1.93
45146967--45147043	38	2.0	38	92	0	127	29	12	27	29	1.94
45149728--45149899	79	2.2	79	84	3	220	25	21	27	25	1.99
45149675--45149897	40	5.6	39	81	8	209	25	21	27	25	1.99
45149755--45149932	79	2.2	80	80	3	191	25	21	28	24	1.99
45160031--45160058	13	2.2	13	100	0	56	0	32	14	53	1.41
45170472--45170505	16	2.1	16	94	0	59	11	11	20	55	1.67
45173104--45173288	40	4.6	40	82	3	228	23	27	24	24	2.00
45182338--45182382	22	2.0	22	83	8	56	53	2	0	44	1.13
45182370--45182419	18	2.6	19	70	20	50	66	0	0	34	0.92
45182380--45182414	18	2.0	18	88	5	54	71	0	0	28	0.86
45187421--45187532	58	1.9	58	100	0	224	41	16	3	39	1.65
45187837--45187989	43	3.6	42	77	8	159	30	28	18	22	1.98
45194262--45194438	49	3.6	50	78	11	161	23	29	20	25	1.99
45194257--45194623	46	7.8	49	73	12	227	23	28	19	28	1.98
45194262--45194438	99	1.8	96	86	6	257	23	29	20	25	1.99
45197757--45197804	24	2.0	24	100	0	96	41	37	4	16	1.68
45198784--45198932	43	3.5	43	73	9	144	27	28	17	26	1.98
45204479--45204535	18	3.1	19	70	12	55	45	0	10	43	1.38
45205524--45205721	98	2.0	98	99	0	387	34	6	3	56	1.39
45220289--45220343	6	9.3	6	92	4	85	63	0	3	32	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45225900--45226107	40	5.2	40	81	7	226	25	21	26	26	1.99
45225900--45226086	79	2.3	81	82	8	238	25	21	26	26	1.99
45225904--45226121	79	2.7	79	79	10	230	25	21	27	26	1.99
45230679--45230717	19	2.1	19	100	0	78	43	25	5	25	1.75
45233316--45233399	34	2.5	34	88	5	118	45	0	14	40	1.45
45233316--45233418	34	3.1	34	84	4	104	45	0	13	39	1.50
45233283--45233425	67	2.2	66	78	8	148	47	0	11	40	1.44
45233482--45233875	126	3.1	126	86	3	553	38	17	15	28	1.91
45236551--45236594	21	2.1	21	86	0	61	4	11	50	34	1.59
45236838--45236880	18	2.4	18	88	7	61	46	6	23	23	1.76
45238407--45238459	25	2.1	24	86	6	70	66	1	1	30	1.13
45238634--45238679	21	2.2	21	92	0	74	34	0	23	41	1.55
45239170--45239204	10	3.5	10	88	0	52	0	48	20	31	1.50
45239432--45239457	12	2.2	12	100	0	52	0	7	7	84	0.77
45239803--45239857	24	2.3	24	76	14	60	20	7	0	72	1.07
45246481--45246508	2	14.0	2	100	0	56	50	0	50	0	1.00
45246880--45246912	12	2.8	12	82	17	50	75	0	0	24	0.80
45246871--45246913	22	2.0	22	81	9	52	72	0	0	27	0.85
45247055--45247108	27	2.0	27	82	13	67	31	3	3	61	1.31
45248563--45248616	20	2.7	20	91	0	72	42	3	12	40	1.61
45248670--45248716	24	2.0	24	100	0	94	34	14	4	46	1.64
45250849--45250957	21	5.1	21	83	4	119	37	24	22	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45251328--45251383	15	3.7	15	82	2	76	51	10	1	35	1.47
45257126--45257176	21	2.4	21	96	0	93	70	0	1	27	0.98
45257120--45257194	17	4.4	17	79	12	75	72	1	2	24	1.06
45257125--45257181	12	4.9	12	76	20	59	71	0	1	26	0.95
45257129--45257205	21	3.8	20	78	16	70	72	0	5	22	1.04
45257119--45257205	39	2.2	39	82	8	97	72	1	4	21	1.09
45263523--45263571	10	4.9	10	85	7	64	69	2	6	22	1.21
45263585--45263622	13	2.8	13	88	4	58	44	13	0	42	1.43
45267007--45267071	32	2.0	32	96	0	121	35	16	13	33	1.89
45267555--45267692	69	2.0	69	98	0	267	34	12	15	36	1.86
45271025--45271169	43	3.4	43	78	4	141	32	24	17	24	1.97
45271025--45271139	43	2.7	43	82	1	142	31	23	18	26	1.97
45276897--45277109	50	4.2	50	93	0	354	25	10	19	44	1.83
45278520--45278786	135	2.0	137	82	4	335	32	26	20	20	1.97
45280333--45280384	9	5.7	9	76	13	52	34	5	40	19	1.75
45280333--45280384	19	2.9	17	78	13	59	34	5	40	19	1.75
45284124--45284150	14	1.9	14	100	0	54	29	0	37	33	1.58
45284711--45284764	27	2.0	28	85	3	74	50	0	7	42	1.30
45284956--45284984	14	2.0	15	93	6	51	37	34	0	27	1.57
45293523--45293588	24	2.8	24	83	4	80	39	19	19	21	1.93
45302544--45302569	11	2.4	11	100	0	52	61	7	0	30	1.24
45306651--45306754	51	2.0	51	96	0	190	37	12	27	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45307667--45307722	27	2.1	27	96	0	103	35	19	25	19	1.95
45314501--45314533	11	2.9	12	86	13	52	33	0	0	66	0.92
45316232--45316273	15	2.7	15	82	10	50	38	0	26	35	1.57
45317509--45317595	44	2.0	44	90	0	138	11	31	25	32	1.91
45317509--45317580	22	3.3	22	78	0	90	11	31	25	31	1.90
45317522--45317595	22	3.4	22	80	0	85	10	32	25	31	1.90
45319539--45320682	49	23.6	49	97	1	2114	30	29	8	32	1.86
45339358--45339396	19	2.1	19	85	0	51	46	15	10	28	1.78
45341216--45341341	20	6.4	20	70	3	76	20	18	19	41	1.91
45341216--45341350	40	3.4	40	81	2	148	19	18	20	42	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284