genome.fa.s9.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  142  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47659431--47659573	72	2.0	72	95	0	259	25	23	20	30	1.98
47663033--47663118	40	2.2	40	97	0	163	41	20	5	31	1.76
47667371--47667754	48	8.0	48	83	4	380	26	28	17	27	1.97
47667376--47667740	96	3.8	96	82	3	421	25	28	17	27	1.98
47667374--47667740	144	2.5	142	81	8	429	25	28	17	27	1.98
47673067--47673112	23	2.0	23	100	0	92	34	21	17	26	1.95
47674307--47674336	15	2.0	15	93	0	51	56	16	0	26	1.40
47678260--47678654	23	17.2	23	75	8	200	30	24	20	24	1.99
47678250--47678654	46	8.8	46	82	3	510	30	24	20	24	1.99
47678250--47678653	92	4.4	92	94	0	666	30	24	20	24	1.98
47682684--47682790	28	3.8	28	89	0	151	34	9	25	30	1.87
47684800--47685861	92	11.5	92	97	0	1957	30	23	19	25	1.98
47695253--47695473	48	4.6	46	80	7	212	23	28	20	28	1.99
47695256--47695473	96	2.3	97	83	7	268	23	27	20	28	1.99
47706830--47706951	43	2.8	43	85	3	156	26	14	26	32	1.95
47713905--47713936	12	2.7	12	95	0	55	65	12	9	12	1.47
47714050--47714080	12	2.6	12	94	0	53	67	12	16	3	1.35
47714755--47714808	27	2.0	27	96	0	99	16	22	5	55	1.62
47716959--47717110	43	3.5	43	69	11	114	25	19	24	30	1.98
47717506--47717565	29	2.1	29	96	0	111	35	23	11	30	1.90
47718001--47718039	19	2.2	18	86	9	53	20	41	25	12	1.88
47719244--47719411	90	1.9	90	81	2	203	23	26	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47719334--47719441	42	2.6	42	82	2	119	25	30	18	25	1.98
47719244--47719539	132	2.2	137	82	7	347	24	28	19	28	1.98
47719457--47719637	49	3.7	48	84	2	220	22	30	19	26	1.98
47728444--47728478	18	1.9	18	88	0	52	54	0	2	42	1.15
47731061--47731241	6	29.8	6	75	14	158	48	12	18	20	1.81
47731040--47731216	30	6.1	30	81	10	170	48	13	17	20	1.80
47731061--47731241	55	3.3	54	85	5	222	48	12	18	20	1.81
47731061--47731216	85	1.8	84	97	0	276	48	13	17	20	1.80
47731364--47731440	27	2.8	28	86	3	95	37	23	22	16	1.94
47731743--47731825	27	3.1	26	87	5	112	37	21	21	19	1.94
47732024--47732211	27	7.0	27	86	0	214	26	20	18	34	1.96
47732224--47733241	54	18.9	54	97	0	1853	42	9	20	27	1.82
47735079--47735214	63	2.1	64	85	5	177	37	17	25	19	1.93
47743609--47743834	45	5.0	45	86	0	292	26	13	26	33	1.94
47752965--47753148	40	4.6	40	82	2	235	25	27	22	25	2.00
47753708--47753858	76	2.0	76	94	2	268	35	25	6	32	1.82
47754565--47754755	99	2.0	93	93	6	328	26	19	9	44	1.81
47761267--47761477	40	5.3	40	82	1	246	26	27	21	24	1.99
47765951--47766208	45	5.7	45	87	0	363	24	15	27	32	1.95
47765951--47766182	90	2.6	90	98	0	446	24	15	27	33	1.95
47775842--47775876	18	1.9	18	94	0	61	54	0	0	45	0.99
47789246--47789308	30	2.1	30	82	5	74	46	1	23	28	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47791270--47791339	27	2.6	27	95	2	113	31	28	12	27	1.93
47791270--47791367	28	3.5	28	90	2	135	31	28	13	26	1.94
47793863--47794210	40	8.7	40	93	0	597	31	19	26	22	1.98
47795628--47795811	64	2.8	64	76	8	185	23	30	16	29	1.96
47801393--47801472	38	2.1	38	90	0	124	20	22	28	28	1.98
47801444--47801675	43	5.4	43	87	1	315	12	23	33	30	1.92
47813022--47813191	42	4.0	43	93	2	290	22	19	34	23	1.97
47813020--47813190	85	2.0	85	98	0	333	23	19	33	23	1.97
47813267--47813347	31	2.5	31	80	4	81	61	18	3	16	1.48
47813581--47813638	21	2.8	20	74	10	53	1	46	18	32	1.60
47819286--47819511	9	24.6	9	75	9	143	38	0	13	47	1.49
47819286--47819511	18	12.3	18	76	9	161	38	0	13	47	1.49
47819339--47819511	27	6.2	27	77	10	159	38	1	13	46	1.51
47819262--47819483	114	1.9	114	86	3	313	38	0	13	47	1.49
47819616--47819671	15	3.8	15	78	21	73	53	0	0	46	1.00
47819848--47819915	24	2.8	24	86	8	102	45	7	19	27	1.76
47822150--47822424	134	2.1	134	92	1	462	50	18	10	20	1.75
47825117--47825162	12	3.9	11	81	13	56	43	0	0	56	0.99
47825151--47825182	15	2.1	15	94	0	55	31	9	0	59	1.29
47826046--47826079	14	2.4	14	90	9	52	44	23	0	32	1.54
47826241--47826340	41	2.5	41	95	1	175	18	21	24	37	1.94
47828988--47829471	245	2.0	245	93	0	833	22	16	26	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47829930--47830364	217	2.0	217	92	0	717	25	19	23	31	1.98
47834483--47834713	79	2.9	80	82	6	263	24	21	28	25	1.99
47834483--47834706	40	5.7	40	84	5	251	24	21	28	26	1.99
47851243--47851289	20	2.3	20	92	0	76	34	10	23	31	1.89
47853000--47853222	40	5.6	40	81	2	250	25	24	26	23	2.00
47852998--47853258	80	3.3	80	81	3	276	26	24	25	24	2.00
47852998--47853258	120	2.2	120	82	6	307	26	24	25	24	2.00
47854613--47854719	24	4.3	24	86	5	135	29	22	19	28	1.98
47856703--47856956	55	4.8	54	74	12	199	22	24	15	37	1.93
47873948--47874170	40	5.6	39	84	4	225	26	28	20	24	1.99
47873948--47874170	120	1.9	119	81	6	272	26	28	20	24	1.99
47888205--47888296	40	2.3	40	84	0	121	32	26	11	29	1.92
47891607--47891684	29	2.7	28	84	11	104	25	15	30	28	1.96
47891637--47892126	174	2.9	173	89	6	781	30	14	24	31	1.94
47897234--47897792	280	2.0	280	94	0	976	25	21	23	30	1.99
47900175--47900261	44	2.0	44	97	0	165	18	25	19	36	1.94
47901387--47901469	43	1.9	43	95	0	148	31	26	26	15	1.96
47904799--47905060	39	6.7	40	88	7	337	24	27	22	25	2.00
47908587--47908764	45	4.0	45	87	1	250	25	22	25	26	2.00
47908587--47908756	90	1.9	90	91	0	277	24	23	25	27	2.00
47909331--47909363	16	1.9	18	88	11	52	24	15	12	48	1.78
47923767--47923791	6	4.2	6	100	0	50	16	0	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47924331--47924395	32	2.0	32	100	0	130	15	18	18	47	1.82
47931272--47931372	52	1.9	52	91	0	166	28	18	27	24	1.98
47941018--47941187	45	3.7	45	80	4	189	23	14	24	37	1.92
47941021--47941197	92	1.9	92	81	2	212	23	15	24	36	1.94
47943890--47944005	42	2.8	41	77	7	119	29	14	25	31	1.95
47944092--47944138	20	2.3	20	85	0	67	31	4	29	34	1.77
47948583--47948757	46	3.8	46	77	10	194	28	27	21	22	1.99
47948591--47948761	93	1.8	93	93	0	297	28	27	21	22	1.99
47954641--47954690	18	2.8	18	93	0	82	10	36	30	24	1.88
47956177--47956302	46	2.7	47	95	2	220	29	28	19	22	1.98
47957803--47957889	28	3.1	28	86	0	120	21	16	35	26	1.94
47958208--47958573	27	13.7	26	79	6	229	39	20	10	30	1.85
47958208--47958573	54	6.8	54	81	5	377	39	20	10	30	1.85
47958230--47958519	133	2.2	132	81	8	336	39	20	9	31	1.84
47958229--47958547	81	4.0	80	84	6	362	38	19	9	31	1.84
47958499--47958589	27	3.4	27	87	3	112	38	16	15	29	1.89
47960977--47961146	93	1.8	93	94	0	304	28	30	21	20	1.98
47960968--47961143	46	3.8	46	78	12	198	29	30	20	19	1.97
47966552--47966639	43	2.0	43	80	8	99	23	20	26	29	1.99
47966564--47966723	43	3.8	41	75	12	117	25	18	26	29	1.98
47968930--47969113	27	6.8	27	83	0	224	29	21	7	41	1.80
47968930--47969113	54	3.4	54	88	0	269	29	21	7	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47969133--47969287	27	5.8	27	77	7	111	40	20	11	27	1.87
47969133--47969245	54	2.1	54	83	3	138	42	19	8	29	1.81
47969249--47969481	27	9.0	27	80	8	270	34	19	21	24	1.96
47969278--47969312	18	1.9	18	100	0	70	28	22	25	22	1.99
47969659--47969728	25	2.8	25	88	0	104	28	25	21	24	1.99
47971922--47972099	27	6.6	27	80	5	180	32	20	7	39	1.80
47971940--47972097	54	2.9	54	89	0	235	30	21	6	41	1.79
47971940--47972095	81	1.9	81	90	0	249	30	21	7	41	1.79
47971922--47972098	54	3.3	54	86	0	228	31	20	7	40	1.80
47971922--47972124	81	2.5	80	78	6	237	33	20	7	38	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284