genome.fa.s9.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  160  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53621989--53622019	11	2.8	11	90	0	53	61	9	16	12	1.56
53621978--53622019	22	1.9	22	85	9	59	61	7	16	14	1.53
53634968--53635022	17	3.2	16	85	14	67	58	1	1	38	1.20
53634977--53635026	22	2.3	21	82	3	64	54	2	0	44	1.11
53635411--53635453	21	2.0	21	95	0	77	27	0	37	34	1.57
53635434--53635466	16	2.1	16	94	0	57	33	0	36	30	1.58
53635445--53635539	45	2.1	44	88	1	136	34	5	27	32	1.79
53635701--53635735	18	2.0	17	88	5	52	54	0	0	45	0.99
53635659--53635731	27	2.7	27	76	8	76	52	2	0	45	1.15
53637338--53637364	11	2.5	11	100	0	54	51	18	7	22	1.70
53639608--53639638	15	2.1	15	100	0	62	45	0	19	35	1.51
53647229--53647294	28	2.3	29	82	12	75	22	16	13	46	1.82
53647394--53647487	47	2.0	47	97	0	179	35	15	6	42	1.73
53650298--53650331	17	2.0	17	94	0	59	44	0	11	44	1.40
53656359--53656544	43	4.3	43	83	0	228	32	21	17	28	1.96
53656386--53656543	86	1.8	86	93	0	271	30	20	17	31	1.95
53657420--53657457	19	2.1	18	85	9	51	52	0	7	39	1.31
53662678--53663968	478	2.7	478	99	0	2521	40	11	10	36	1.77
53664103--53664293	98	2.0	98	97	1	366	48	9	3	38	1.52
53668576--53668607	15	2.1	15	94	0	55	31	9	0	59	1.29
53669211--53669264	25	2.2	25	100	0	108	40	24	7	27	1.81
53669682--53669900	41	5.4	40	89	4	305	16	21	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53669682--53669931	41	6.1	40	87	4	297	17	21	22	38	1.93
53670289--53670340	21	2.5	21	93	0	86	42	3	3	50	1.39
53670822--53670851	14	2.1	14	93	0	51	46	36	0	16	1.47
53670844--53670889	23	2.0	22	84	12	58	50	10	2	36	1.50
53671919--53672022	51	2.0	51	100	0	208	27	23	9	39	1.86
53678105--53678134	14	2.1	14	93	0	51	46	30	0	23	1.52
53686414--53686439	12	2.2	12	100	0	52	15	0	0	84	0.62
53687528--53687556	6	4.8	6	100	0	58	82	0	17	0	0.66
53695842--53695887	17	2.7	18	80	10	60	39	21	19	19	1.93
53698716--53698970	49	5.2	48	74	12	225	23	28	18	29	1.98
53698709--53698972	98	2.7	97	83	6	329	25	28	17	28	1.98
53708228--53708270	20	2.0	22	86	8	63	25	2	4	67	1.22
53709790--53710620	59	14.1	59	99	0	1646	28	14	5	51	1.64
53724604--53724673	35	2.0	35	97	0	131	34	21	25	18	1.96
53726440--53726479	19	1.9	19	85	14	53	45	2	0	52	1.14
53727134--53727184	8	6.1	8	93	6	84	25	0	0	74	0.82
53727141--53727198	24	2.4	24	82	8	73	29	0	1	68	0.99
53729992--53730045	28	2.0	27	85	7	74	46	3	3	46	1.38
53729987--53730051	28	2.3	29	76	12	73	43	3	3	50	1.33
53735900--53735952	23	2.2	26	83	10	67	26	1	15	56	1.49
53736781--53736851	31	2.3	31	92	0	115	28	7	15	49	1.70
53739135--53739194	27	2.3	26	82	2	66	23	23	18	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53741750--53741790	19	2.4	17	88	12	57	24	12	14	48	1.78
53741757--53741795	19	2.1	19	95	0	69	28	10	12	48	1.74
53742714--53742824	40	2.8	40	82	6	118	31	14	25	28	1.95
53745837--53745866	14	2.1	15	93	6	53	63	13	10	13	1.52
53753229--53753406	27	6.6	27	85	3	214	30	28	14	26	1.95
53753250--53753405	82	1.9	81	89	3	242	30	28	14	26	1.95
53767018--53767054	17	2.2	17	90	0	56	24	18	5	51	1.67
53770968--53771138	94	1.8	94	83	2	227	32	19	12	35	1.89
53770968--53771158	94	2.0	94	81	2	222	32	20	12	34	1.90
53771041--53771320	130	2.2	130	82	7	352	31	19	13	35	1.91
53771204--53771423	103	2.1	103	83	1	271	31	18	12	37	1.87
53770968--53771490	233	2.3	224	78	5	514	32	18	12	36	1.89
53774691--53774838	80	1.9	80	92	0	251	21	27	20	30	1.98
53774691--53774838	40	3.7	40	89	0	224	21	27	20	30	1.98
53780987--53781121	57	2.3	58	78	7	139	31	23	17	28	1.97
53782252--53782279	5	5.6	5	100	0	56	78	0	0	21	0.75
53788013--53788066	28	1.9	28	96	0	99	40	12	12	33	1.82
53794235--53794272	3	12.7	3	94	0	67	34	2	0	63	1.09
53795850--53796093	124	2.0	124	87	0	353	38	22	15	24	1.92
53797024--53797050	13	2.1	13	100	0	54	48	22	7	22	1.75
53798244--53798413	25	7.0	24	86	7	218	27	22	20	28	1.99
53798471--53798527	9	5.9	9	73	15	51	35	21	8	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53798459--53798529	20	3.5	20	94	0	124	32	21	11	35	1.89
53798464--53798518	11	5.4	11	70	16	55	30	20	12	36	1.90
53798566--53798613	25	1.9	25	91	0	78	25	14	25	35	1.94
53799105--53799146	14	3.1	14	83	12	52	19	26	14	40	1.89
53799773--53799850	27	2.9	27	79	11	88	21	20	21	35	1.96
53799896--53800147	27	9.3	27	76	7	152	34	7	20	37	1.82
53799868--53800093	54	4.1	54	74	6	204	32	8	19	38	1.83
53800070--53800255	27	6.9	27	79	7	173	40	8	22	29	1.82
53800073--53800248	81	2.2	81	86	4	239	41	8	20	29	1.82
53800072--53800255	54	3.4	53	87	1	224	40	8	22	28	1.83
53800261--53800350	27	3.3	27	84	6	112	33	11	15	40	1.83
53800081--53800282	81	2.5	81	81	4	194	39	8	22	28	1.84
53800136--53800309	81	2.1	81	77	6	172	38	9	22	29	1.86
53802762--53802865	52	2.0	53	82	1	129	37	13	23	25	1.91
53812883--53812907	13	1.9	13	100	0	50	68	24	0	8	1.16
53813840--53813886	17	2.6	18	76	13	51	23	4	27	44	1.72
53814558--53814597	19	2.1	19	86	9	55	52	10	5	32	1.56
53815014--53815147	67	2.0	69	83	2	173	40	3	6	49	1.47
53820154--53820225	26	2.7	26	78	6	74	23	23	18	34	1.96
53828056--53828194	70	2.0	70	97	0	260	34	17	26	20	1.95
53828382--53828526	40	3.6	40	85	4	193	25	24	26	23	2.00
53836437--53836581	40	3.6	40	85	4	193	25	24	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53839048--53839276	48	4.8	45	74	9	154	24	27	20	28	1.99
53844344--53844476	49	2.7	49	82	4	162	25	30	18	25	1.98
53858893--53858976	28	3.0	28	91	1	132	46	30	3	19	1.66
53858879--53858976	28	3.7	27	85	9	123	46	32	4	16	1.65
53861121--53861899	22	35.4	22	96	2	1449	32	17	4	44	1.70
53869507--53869688	101	1.8	100	84	3	249	40	7	18	33	1.79
53872198--53872261	3	21.7	3	77	17	55	64	1	4	29	1.23
53874015--53874142	6	21.3	6	100	0	256	33	32	0	33	1.58
53874346--53874393	21	2.2	23	85	7	64	58	0	0	41	0.98
53877480--53877540	31	2.0	31	90	0	95	44	3	3	49	1.35
53890127--53890175	26	2.0	26	84	8	66	28	0	10	61	1.29
53898211--53898247	17	2.2	17	100	0	74	48	16	5	29	1.68
53904452--53904509	23	2.6	23	81	13	75	31	0	5	63	1.16
53904459--53904505	22	2.1	22	88	7	69	29	0	4	65	1.11
53916577--53917458	207	4.3	206	89	3	1334	32	17	21	27	1.96
53916591--53917448	406	2.1	408	91	3	1400	32	17	21	28	1.96
53919226--53919292	17	4.0	17	70	16	50	37	1	0	61	1.05
53919364--53919422	23	2.6	23	76	12	68	28	0	5	66	1.13
53929440--53929532	46	2.0	46	95	0	168	30	19	23	26	1.98
53930780--53930901	55	2.2	55	91	0	190	21	22	29	27	1.99
53932220--53932683	48	9.9	48	73	7	326	26	24	18	29	1.98
53932507--53932597	42	2.2	42	79	0	101	28	27	16	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53932429--53932682	138	1.8	138	82	1	330	26	24	18	30	1.98
53937146--53937316	92	1.9	90	80	7	200	26	17	32	23	1.97
53937330--53937462	49	2.7	50	80	4	162	27	20	29	23	1.99
53945017--53945188	86	2.0	86	98	0	335	25	13	30	30	1.94
53945125--53945245	46	2.6	46	85	2	152	27	19	30	23	1.98
53945360--53945417	30	2.0	30	86	3	82	44	12	8	34	1.72
53957315--53957479	42	3.9	42	75	7	156	30	24	14	30	1.95
53958952--53959016	32	2.0	32	96	0	121	38	24	18	18	1.93
53964765--53964948	40	4.6	40	83	6	205	23	21	27	27	1.99
53964765--53964945	80	2.3	81	84	9	230	23	21	27	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284