genome.fa.s9.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  140  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46937969--46938202	48	4.9	48	81	7	251	25	27	19	27	1.99
46939761--46939817	29	2.0	29	82	6	71	35	22	19	22	1.96
46940731--46940759	13	2.1	14	93	6	51	37	20	0	41	1.53
46945518--46945556	14	2.8	14	84	0	51	38	12	17	30	1.88
46945684--46946097	206	2.0	205	99	0	810	37	9	7	45	1.65
46946225--46946276	15	3.2	15	73	19	50	46	0	0	53	1.00
46946238--46946274	19	1.9	19	88	0	56	51	0	0	48	1.00
46946357--46946412	22	2.6	22	83	5	62	51	0	0	48	1.00
46954041--46954122	42	1.9	42	85	2	110	31	25	13	29	1.94
46959228--46959371	42	3.4	41	77	12	114	30	20	22	26	1.98
46962994--46963736	372	2.0	372	99	0	1459	39	6	17	36	1.77
46964172--46964307	51	2.7	49	82	2	164	26	19	24	29	1.99
46964167--46964312	49	2.9	51	80	4	181	26	19	25	28	1.98
46973663--46973846	51	3.6	51	82	5	176	26	17	27	28	1.98
46978276--46978307	12	2.7	12	90	0	55	46	21	0	31	1.52
46978775--46978883	43	2.6	42	71	8	103	30	23	17	28	1.97
46986348--46986590	40	6.1	40	88	2	330	25	19	28	26	1.99
46992917--46992941	13	1.9	13	100	0	50	24	32	28	16	1.96
46994417--46994645	27	8.6	26	78	8	223	37	19	11	30	1.88
46994468--46994645	54	3.3	54	91	0	277	38	19	11	30	1.87
46994417--46994647	54	4.3	54	85	6	274	37	19	11	30	1.88
46994659--46994826	27	6.2	27	85	0	219	31	21	6	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46994655--46994826	81	2.1	81	86	0	245	31	20	6	40	1.79
46994441--46994918	27	17.7	27	77	4	205	36	20	9	33	1.85
46994902--46995112	27	7.8	27	91	0	323	33	20	20	25	1.97
46995817--46995890	27	2.8	27	89	2	105	17	24	21	36	1.95
46996031--46996137	31	3.5	31	88	0	133	21	14	15	47	1.82
46996027--46996169	6	23.3	6	70	14	78	20	14	16	48	1.80
46998245--46998472	50	4.6	49	82	8	255	25	16	26	31	1.97
46998241--46998470	101	2.3	99	84	5	277	25	17	26	30	1.97
47005702--47005927	50	4.5	50	82	8	253	24	18	26	30	1.98
47005803--47005884	26	3.2	26	65	30	68	24	14	30	30	1.95
47005698--47005939	101	2.4	98	85	5	299	24	18	26	29	1.98
47009529--47009699	93	1.8	93	94	0	306	27	29	21	21	1.98
47009521--47009696	46	3.8	46	81	10	214	28	29	21	21	1.98
47012088--47012176	30	3.0	30	79	11	94	56	15	17	10	1.67
47012088--47012170	15	5.6	14	73	10	58	55	16	18	9	1.68
47012099--47012176	15	5.2	15	75	9	70	55	15	17	11	1.69
47015989--47016155	46	3.6	44	74	18	153	29	28	18	23	1.98
47037872--47038328	228	2.0	228	100	0	914	34	9	22	33	1.87
47038306--47038448	50	2.8	51	87	1	189	24	18	27	30	1.98
47038260--47038497	51	4.7	51	81	2	192	26	16	25	31	1.96
47038367--47038542	51	3.5	51	83	3	167	27	16	27	28	1.97
47039733--47039767	17	2.1	17	100	0	70	31	5	28	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47074824--47074869	25	1.9	23	86	8	65	26	2	2	69	1.11
47074832--47074880	23	2.2	22	85	10	64	28	0	2	69	1.00
47074849--47074920	33	2.1	34	85	12	96	26	0	4	69	1.06
47074888--47074974	9	9.6	9	70	16	54	29	0	8	62	1.24
47078294--47078329	16	2.2	16	100	0	72	22	19	38	19	1.93
47079046--47079335	120	2.4	120	91	3	485	42	3	4	50	1.37
47079176--47079231	15	4.1	14	78	14	55	41	0	0	58	0.98
47079107--47079293	61	3.1	61	67	20	183	40	3	6	49	1.44
47079287--47079321	18	2.0	17	88	5	52	45	0	0	54	0.99
47079275--47079549	147	1.9	149	96	1	509	47	2	3	46	1.33
47079434--47079468	18	2.0	17	88	5	52	45	0	0	54	0.99
47079630--47079724	45	2.1	44	88	5	138	36	26	2	34	1.68
47082900--47082978	39	2.0	39	92	4	133	40	3	16	39	1.67
47083403--47083448	23	2.0	23	83	8	58	43	0	6	50	1.28
47085529--47085578	23	2.2	23	85	0	64	42	20	22	16	1.89
47092356--47092402	24	2.0	23	84	8	60	59	2	0	38	1.09
47096320--47096360	21	2.0	21	90	0	64	19	29	21	29	1.98
47102283--47102328	21	2.1	22	96	4	85	34	21	10	32	1.88
47104951--47104992	16	2.8	16	85	7	52	52	2	4	40	1.35
47106863--47106898	16	2.2	16	90	0	54	86	8	2	2	0.77
47110823--47110858	13	2.8	14	84	16	51	27	25	0	47	1.52
47110810--47110850	18	2.2	19	87	12	59	29	24	0	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47111722--47111748	13	2.1	13	100	0	54	0	14	7	77	0.97
47113010--47113039	12	2.4	12	94	5	51	40	3	0	56	1.16
47130993--47131018	13	2.0	13	100	0	52	15	7	23	53	1.67
47152078--47152140	32	2.0	32	83	0	81	25	20	12	41	1.88
47156359--47156388	7	4.3	7	91	0	51	40	40	0	20	1.52
47164522--47164555	6	5.7	6	100	0	68	32	0	67	0	0.91
47165531--47165609	40	2.0	40	84	0	104	43	17	15	24	1.87
47166090--47166136	23	2.0	23	91	0	76	14	17	29	38	1.89
47166468--47166505	15	2.4	16	86	4	60	57	5	13	23	1.56
47166468--47166504	16	2.4	16	91	8	60	56	5	13	24	1.58
47168554--47168813	35	7.4	35	84	0	304	26	16	16	41	1.88
47179478--47179544	9	7.0	9	72	12	53	59	2	2	34	1.28
47180683--47180724	6	7.0	6	88	0	66	2	52	30	14	1.54
47192918--47193161	131	1.9	129	88	3	373	30	15	25	28	1.96
47192935--47193368	44	9.9	44	73	10	280	29	15	26	28	1.96
47192935--47193588	219	3.0	220	81	3	620	30	16	24	27	1.97
47193549--47193843	78	3.8	78	89	1	439	32	18	23	25	1.97
47193873--47194042	89	1.9	89	91	0	277	30	15	28	25	1.96
47193783--47194050	45	5.9	45	78	8	276	31	16	26	25	1.96
47194418--47194483	18	3.7	18	91	4	107	36	12	15	36	1.84
47194415--47194483	17	3.8	19	88	11	117	37	11	14	36	1.83
47194462--47194506	23	2.0	22	82	4	54	40	4	17	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47198047--47198167	45	2.7	45	83	2	145	40	14	22	22	1.90
47198635--47198668	18	1.9	17	94	5	59	50	0	2	47	1.16
47198700--47198760	29	2.1	29	84	0	77	52	1	9	36	1.45
47200259--47200298	5	8.0	5	94	0	71	37	20	2	40	1.66
47200592--47200658	30	2.2	30	81	5	73	50	7	11	29	1.66
47200753--47200828	31	2.5	31	100	0	152	25	7	18	48	1.74
47209155--47209221	33	2.0	33	88	0	98	23	11	8	55	1.64
47209713--47209781	31	2.2	31	80	10	79	50	14	13	21	1.76
47212498--47212536	18	2.2	18	85	0	51	48	7	5	38	1.54
47227152--47227372	46	4.9	44	76	8	171	25	19	30	24	1.98
47238770--47238822	25	2.1	25	96	0	97	30	11	9	49	1.70
47244886--47245026	66	2.1	66	97	1	264	25	22	26	24	2.00
47245651--47245707	29	2.0	29	100	0	114	24	7	10	57	1.56
47247638--47247664	5	5.4	5	100	0	54	37	0	22	40	1.54
47250637--47250664	14	2.0	14	100	0	56	21	35	14	28	1.92
47256209--47256234	2	13.0	2	100	0	52	50	0	50	0	1.00
47257234--47257260	5	5.4	5	100	0	54	18	44	0	37	1.50
47259051--47259125	38	2.0	38	91	0	123	41	6	18	33	1.77
47263178--47263238	31	2.0	31	90	0	95	37	14	6	40	1.72
47266841--47266878	6	6.3	6	96	0	67	44	15	36	2	1.61
47272941--47272987	21	2.2	22	92	3	78	21	38	19	21	1.94
47276921--47276978	29	2.0	29	100	0	116	27	3	20	48	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47283619--47283644	5	5.2	5	100	0	52	80	0	0	19	0.71
47286051--47286097	20	2.2	21	88	7	69	42	0	6	51	1.27
47287271--47287329	28	2.1	28	100	0	118	22	10	23	44	1.83
47288578--47288624	21	2.2	22	92	3	78	21	38	19	21	1.94
47293031--47293460	217	2.0	217	88	1	648	35	12	20	31	1.89
47294852--47294890	19	2.1	19	85	0	51	61	7	0	30	1.24
47296795--47296873	39	2.0	39	100	0	158	27	26	20	25	1.99
47301414--47301618	51	4.0	51	88	3	288	31	21	13	33	1.92
47301411--47301615	101	2.0	102	89	2	315	31	21	13	33	1.92
47310238--47310262	11	2.3	11	100	0	50	44	0	0	56	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284