genome.fa.s9.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  141  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47310275--47310337	27	2.4	27	81	7	76	42	0	1	55	1.09
47310297--47310335	19	2.1	19	90	4	62	41	0	2	56	1.13
47310253--47310337	8	9.9	8	69	14	53	38	1	1	58	1.13
47311821--47311900	30	2.6	30	79	13	92	41	10	2	46	1.51
47312201--47312240	21	1.9	21	100	0	80	37	10	10	42	1.72
47312697--47312726	15	2.0	15	100	0	60	33	6	13	46	1.69
47314596--47314640	23	2.0	23	87	8	67	37	2	2	57	1.23
47315116--47315189	30	2.5	30	81	0	94	45	5	1	47	1.34
47315164--47315208	22	2.0	23	86	4	65	48	4	0	46	1.22
47315172--47315213	22	1.9	22	85	9	59	50	4	0	45	1.23
47315442--47315562	35	3.1	35	67	29	93	11	27	8	52	1.65
47315404--47315562	80	2.0	80	98	0	309	12	28	10	49	1.73
47316063--47316100	6	6.3	6	93	0	67	31	18	0	50	1.47
47316072--47316109	18	2.1	18	85	9	51	31	18	0	50	1.47
47320923--47321098	45	4.0	45	90	1	257	23	22	27	26	2.00
47322125--47322154	15	1.9	16	93	6	53	40	0	0	60	0.97
47322105--47322163	17	3.4	17	72	4	55	35	0	0	64	0.94
47324267--47324323	28	2.0	28	100	0	114	42	3	10	43	1.56
47325387--47325412	3	8.7	3	100	0	52	30	0	34	34	1.58
47332851--47332888	2	19.0	2	88	0	58	2	52	0	44	1.14
47334907--47334982	35	2.1	36	97	2	145	40	14	0	44	1.45
47360568--47360653	43	2.0	43	95	0	154	37	13	31	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47369788--47370000	89	2.5	86	75	8	218	30	20	22	27	1.98
47381812--47381880	29	2.4	29	74	13	70	37	17	7	37	1.77
47383854--47384015	42	3.7	42	83	7	173	29	26	14	29	1.95
47383922--47384027	49	2.2	48	89	3	158	32	27	13	27	1.94
47387792--47387954	43	3.8	42	83	6	211	26	21	29	22	1.99
47387791--47387950	86	1.9	86	92	2	268	26	21	28	23	1.99
47387792--47387976	86	2.2	86	85	3	239	27	22	27	23	2.00
47388028--47388094	31	2.2	31	83	0	80	56	17	7	17	1.63
47393989--47394101	9	12.2	9	79	5	118	30	0	21	46	1.57
47393974--47394101	57	2.2	57	84	0	166	30	0	21	46	1.57
47394221--47395107	241	3.7	241	97	0	1648	32	15	18	34	1.92
47397354--47397391	18	2.1	18	90	5	58	47	2	42	7	1.46
47397424--47397458	18	1.9	18	94	0	61	60	2	31	5	1.35
47397562--47397637	39	1.9	39	86	0	107	21	23	14	40	1.90
47398683--47398784	40	2.5	40	77	4	116	26	22	21	29	1.99
47402940--47402979	20	2.0	20	100	0	80	25	0	35	40	1.56
47405060--47405132	19	3.7	20	72	10	69	61	1	8	28	1.33
47405330--47405423	9	10.4	9	76	11	77	31	0	2	65	1.04
47405329--47405364	10	3.7	10	88	3	56	41	0	0	58	0.98
47405567--47405777	91	2.3	90	80	6	221	34	9	18	38	1.82
47411396--47411709	43	7.3	43	84	4	332	28	31	16	23	1.96
47415172--47415205	18	1.9	18	88	5	52	44	2	2	50	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47415874--47415899	12	2.2	12	100	0	52	46	30	15	7	1.74
47421222--47421275	29	1.9	30	85	14	80	31	14	7	46	1.73
47421613--47421701	28	3.2	26	78	10	70	64	3	4	28	1.29
47423491--47423539	25	2.0	25	83	0	62	34	26	20	18	1.95
47423506--47423570	24	2.7	24	74	11	60	32	23	27	16	1.96
47434804--47434834	16	1.9	16	93	0	53	32	9	6	51	1.60
47435023--47435125	31	3.4	30	72	12	86	49	3	2	43	1.35
47435020--47435147	59	2.1	61	88	2	188	47	4	2	45	1.36
47437956--47438628	239	2.8	239	93	0	1114	35	21	12	31	1.90
47440612--47440669	26	2.1	28	81	6	66	62	5	3	29	1.33
47441440--47441486	24	2.0	24	100	0	94	42	8	17	31	1.79
47441499--47441555	28	2.0	29	86	10	82	42	7	10	40	1.66
47442392--47442425	5	6.8	5	100	0	68	79	0	0	20	0.73
47444569--47444725	21	8.1	21	74	21	157	43	0	0	56	0.99
47444574--47444722	37	4.0	37	100	0	298	42	0	0	57	0.99
47444593--47444700	15	6.2	16	75	21	94	42	0	0	57	0.98
47444688--47444846	61	2.6	59	84	10	153	36	3	9	50	1.50
47445090--47445122	16	2.2	16	89	10	52	42	0	6	51	1.26
47445860--47445953	48	2.0	48	83	8	120	59	5	4	30	1.39
47450123--47450147	7	3.6	7	100	0	50	36	0	16	48	1.46
47469944--47469993	24	2.0	25	88	3	75	52	4	0	44	1.20
47472054--47472128	29	2.7	27	75	20	75	65	1	2	30	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47472245--47472322	31	2.5	31	76	12	79	34	0	3	61	1.14
47472462--47472508	19	2.4	19	78	3	58	21	2	4	72	1.12
47475585--47475698	31	3.7	31	67	10	99	26	16	10	46	1.79
47480334--47480388	15	3.5	15	81	16	67	38	1	0	60	1.08
47481533--47481561	8	3.6	8	100	0	58	86	0	0	13	0.58
47486878--47486926	24	2.0	24	100	0	98	40	8	24	26	1.83
47493706--47493755	25	2.0	25	96	0	91	48	22	4	26	1.68
47505469--47505503	16	2.2	16	89	0	52	11	0	22	65	1.24
47506745--47506784	11	3.6	11	82	0	53	25	7	7	60	1.50
47509488--47509542	21	2.5	22	76	5	58	54	29	3	12	1.55
47511059--47511332	137	2.0	137	88	1	406	36	16	16	29	1.91
47512251--47512373	51	2.4	51	87	2	167	39	9	21	29	1.85
47513693--47514051	51	7.0	51	94	0	637	33	12	21	32	1.91
47513640--47514051	102	4.1	102	96	2	739	33	12	21	32	1.91
47513640--47514051	153	2.7	152	90	3	665	33	12	21	32	1.91
47515889--47515914	3	8.7	3	100	0	52	69	30	0	0	0.89
47517902--47517968	11	6.2	10	81	6	62	34	19	14	31	1.92
47517900--47517961	21	2.9	21	85	7	72	35	20	11	32	1.88
47517902--47517968	32	2.1	33	88	8	102	34	19	14	31	1.92
47517902--47517968	22	3.1	22	84	2	82	34	19	14	31	1.92
47522778--47522815	19	2.1	19	85	5	51	39	0	7	52	1.31
47526522--47526561	18	2.2	18	86	8	55	67	12	0	20	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47526623--47526685	30	2.1	30	91	5	101	58	11	3	26	1.47
47526661--47526693	17	1.9	17	88	11	50	69	3	0	27	1.03
47535429--47535462	16	2.1	16	88	0	50	55	0	11	32	1.36
47538769--47538797	11	2.6	11	100	0	58	20	13	10	55	1.68
47543038--47543066	4	7.2	4	100	0	58	75	0	24	0	0.80
47545164--47545248	44	1.9	44	90	0	134	25	16	23	34	1.95
47548621--47548653	13	2.6	13	90	4	50	48	12	0	39	1.40
47551520--47551605	6	13.7	6	79	15	68	79	1	6	12	0.99
47553634--47553676	22	1.9	23	85	4	61	9	37	16	37	1.81
47556958--47556990	13	2.6	13	90	4	50	48	12	0	39	1.40
47562623--47562689	33	2.0	33	97	0	125	35	17	20	25	1.95
47572084--47572126	17	2.6	16	78	10	50	34	13	2	48	1.56
47576626--47576669	23	1.9	23	90	0	70	0	34	0	65	0.93
47577043--47577089	20	2.3	20	88	0	67	19	36	34	10	1.86
47577961--47577995	18	1.9	18	88	0	52	22	17	14	45	1.84
47579179--47579219	19	2.2	19	86	8	57	0	24	0	75	0.80
47579250--47579283	13	2.6	13	95	0	59	14	11	0	73	1.10
47593921--47594004	26	3.2	26	96	0	150	33	4	25	36	1.77
47607134--47607167	4	9.0	4	87	12	54	50	0	0	50	1.00
47612808--47612845	17	2.2	18	95	4	69	60	7	26	5	1.46
47618998--47619263	131	2.0	131	86	1	372	33	16	18	31	1.93
47632321--47632442	61	2.0	61	96	0	226	40	9	20	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47634378--47634598	48	4.6	46	80	7	212	23	28	20	28	1.99
47634381--47634598	96	2.3	97	83	7	268	23	27	20	28	1.99
47648525--47648615	17	5.4	17	67	23	57	41	2	3	52	1.30
47648647--47648678	12	2.6	12	95	5	55	50	0	3	46	1.17
47653067--47653326	40	6.6	40	89	4	384	25	22	26	26	2.00
47653067--47653326	79	3.3	78	90	3	378	25	22	26	26	2.00
47653060--47653358	79	3.8	79	85	8	330	26	22	25	25	2.00
47653067--47653358	158	1.8	157	85	7	412	26	21	26	26	2.00
47653584--47653627	22	2.0	21	83	16	54	31	18	13	36	1.90
47659284--47659432	74	2.0	74	98	0	289	24	12	26	36	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284