Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: At_chr10 Parameters: 2 7 7 80 10 50 1000 Length: 95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  138  of  284  ( 34012 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46113800--46113830
15
2.1
15
93
0
53
29
35
9
25
1.88
46127103--46127321
48
4.6
48
74
13
157
28
23
20
27
1.99
46134130--46134242
40
2.8
39
86
2
154
30
16
18
33
1.94
46150772--46151191
210
2.0
210
100
0
840
37
16
10
35
1.83
46152433--46152660
114
2.0
114
99
0
447
29
23
11
35
1.91
46155058--46155145
44
2.0
44
93
0
149
28
27
14
29
1.95
46156038--46156134
47
2.1
47
96
0
176
24
14
23
37
1.92
46175225--46175286
30
2.1
30
96
0
115
33
20
24
20
1.97
46183842--46184035
48
4.1
47
72
15
148
27
21
24
26
1.99
46186650--46186823
46
3.8
44
82
8
188
22
28
19
29
1.98
46186552--46186821
94
2.9
91
76
12
253
22
28
20
28
1.99
46193555--46193594
20
2.0
20
90
9
64
70
2
7
20
1.24
46194219--46194250
8
3.9
8
92
8
55
0
12
0
87
0.54
46194218--46194251
9
3.9
9
84
7
52
0
11
0
88
0.52
46194218--46194250
17
1.9
17
93
0
57
0
12
0
87
0.53
46194265--46194449
96
1.9
97
87
3
275
32
27
13
26
1.94
46195183--46195221
12
3.3
11
86
13
51
76
0
2
20
0.90
46201621--46201659
20
2.0
20
90
10
62
69
2
7
20
1.26
46215603--46215861
129
2.0
129
96
1
484
36
22
3
37
1.72
46218187--46218215
14
2.0
15
93
6
51
51
20
0
27
1.47
46221366--46221391
12
2.2
12
100
0
52
50
7
26
15
1.71
46222326--46222380
8
7.1
8
75
8
60
14
3
0
81
0.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46222330--46222412
38
2.2
38
81
12
91
14
9
0
75
1.03
46233526--46233563
20
1.9
20
89
10
60
28
26
0
44
1.54
46233763--46233921
43
3.7
43
79
9
173
30
24
19
25
1.98
46233763--46233922
86
1.9
85
81
6
198
31
24
19
25
1.98
46238252--46238435
40
4.6
41
83
11
224
25
22
27
24
2.00
46238304--46238468
79
2.1
79
83
6
201
26
21
27
24
1.99
46245054--46245317
40
6.7
40
89
5
360
25
21
27
25
1.99
46245054--46245350
119
2.5
118
81
9
338
26
21
27
25
1.99
46249137--46249201
19
3.2
21
79
12
66
70
6
3
20
1.22
46252672--46252808
24
5.6
25
74
10
106
42
20
18
18
1.90
46253305--46253344
21
1.9
21
84
0
53
42
17
0
40
1.49
46268752--46268823
24
2.9
24
85
4
90
31
15
23
29
1.95
46273231--46273279
20
2.5
19
80
3
62
34
0
2
63
1.06
46273231--46273279
10
5.0
10
75
5
55
34
0
2
63
1.06
46283865--46283974
55
2.0
55
98
0
211
25
16
15
42
1.87
46285722--46285809
43
2.0
43
100
0
176
30
13
19
36
1.90
46286768--46286811
22
2.0
22
90
0
70
45
13
4
36
1.64
46290612--46290680
27
2.6
27
78
0
75
33
17
14
34
1.90
46298754--46298779
12
2.2
12
100
0
52
15
30
30
23
1.95
46305686--46305743
30
1.9
30
85
0
80
34
8
25
31
1.86
46306083--46306205
46
2.6
45
83
7
131
32
18
25
23
1.97
46315557--46315611
27
2.1
26
83
12
69
54
0
3
41
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46315590--46315677
31
2.8
31
86
3
124
55
0
3
40
1.16
46327736--46327807
18
4.0
18
69
7
56
25
43
18
13
1.86
46327785--46327869
6
14.2
6
96
0
125
14
37
16
31
1.88
46327877--46327903
6
4.5
6
100
0
54
33
48
18
0
1.49
46335007--46335111
20
5.2
21
67
13
67
31
20
36
11
1.89
46335012--46335097
40
2.2
40
87
4
120
33
20
34
10
1.87
46335012--46335111
40
2.5
40
81
0
119
32
21
37
10
1.86
46335644--46335899
84
3.1
83
93
2
408
38
7
6
47
1.58
46335667--46335929
84
3.1
82
84
10
309
36
8
6
48
1.60
46339229--46339267
21
1.9
21
89
5
62
28
2
23
46
1.65
46346246--46346288
19
2.3
19
95
0
77
41
27
9
20
1.83
46348004--46348053
20
2.5
20
83
0
64
34
20
10
36
1.86
46348240--46348329
24
4.0
22
80
8
92
35
16
21
26
1.94
46348236--46348302
24
3.0
22
85
8
98
34
17
20
26
1.96
46348236--46348325
46
2.0
45
86
2
126
34
17
21
26
1.95
46350384--46350530
74
2.0
74
93
0
249
41
22
5
30
1.76
46373759--46374416
328
2.0
329
88
0
978
32
14
13
38
1.86
46375209--46375379
93
1.8
93
92
0
288
29
28
21
21
1.98
46375204--46375376
46
3.7
46
77
13
192
30
27
20
21
1.98
46375979--46376021
22
1.9
22
85
4
59
23
4
4
67
1.28
46379544--46379767
122
1.9
120
90
1
358
38
11
20
29
1.87
46388835--46388919
28
3.0
28
79
5
91
31
12
25
29
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46406753--46407156
27
14.9
27
75
4
186
31
9
21
37
1.85
46407036--46407125
28
3.2
29
85
6
98
31
7
18
42
1.79
46407009--46407156
55
2.7
54
78
5
136
31
8
19
41
1.81
46410061--46410124
27
2.4
27
81
5
76
21
25
17
35
1.95
46410184--46410350
27
6.2
27
69
16
82
28
10
22
38
1.87
46410158--46410288
54
2.4
54
84
0
136
29
8
22
39
1.83
46410340--46410431
27
3.4
27
84
0
121
41
6
21
30
1.78
46410455--46410511
28
2.0
28
89
0
87
33
10
21
35
1.87
46410454--46410558
27
3.9
26
79
8
102
33
8
18
40
1.81
46410408--46410580
27
6.3
27
70
10
100
30
8
19
41
1.80
46421352--46421571
40
5.6
40
80
3
223
25
23
26
24
2.00
46421352--46421535
79
2.3
81
82
3
230
25
23
26
23
2.00
46424860--46424936
29
2.7
29
91
2
129
31
11
25
31
1.92
46432006--46432104
28
3.7
28
76
13
100
35
14
23
27
1.93
46432128--46432322
51
3.8
51
81
8
252
32
10
26
31
1.89
46436901--46437005
52
2.0
52
98
0
201
27
21
15
35
1.94
46437427--46437549
60
2.0
60
98
0
237
41
12
18
27
1.86
46439451--46439506
25
2.2
25
100
0
112
17
19
8
53
1.70
46439536--46439568
13
2.6
13
90
4
50
39
0
12
48
1.40
46450783--46450927
73
2.0
73
93
0
245
37
14
19
28
1.91
46457478--46457625
51
2.9
51
91
2
235
32
14
25
27
1.95
46457759--46457875
53
2.2
53
92
0
198
44
7
24
23
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46465333--46465434
43
2.3
44
83
11
122
22
27
23
26
2.00
46465789--46465921
43
3.1
43
93
2
216
30
33
24
11
1.90
46465893--46466094
38
5.3
38
86
2
287
32
25
20
21
1.98
46465893--46466094
78
2.6
76
85
3
296
32
25
20
21
1.98
46474239--46474370
40
3.3
40
84
2
176
22
18
28
29
1.98
46474241--46474389
79
1.9
80
80
1
174
24
18
29
28
1.98
46485541--46485734
40
5.1
40
75
16
171
24
22
28
24
2.00
46485626--46485687
31
2.0
31
96
0
115
25
20
25
27
1.99
46485587--46485722
71
1.9
70
86
1
191
25
21
27
25
1.99
46504559--46505484
40
23.2
40
98
0
1748
23
22
24
29
1.99
46517062--46517227
90
1.8
90
83
5
219
27
16
25
30
1.96
46517076--46517230
42
3.5
42
66
14
107
27
18
27
27
1.98
46520571--46520793
40
5.6
40
81
5
245
26
23
26
23
2.00
46520571--46520831
80
3.3
80
82
3
294
26
23
26
24
2.00
46520571--46520831
120
2.2
120
82
6
307
26
23
26
24
2.00
46525296--46525464
48
3.6
46
73
6
151
28
18
27
24
1.98
46525441--46525704
49
5.6
47
77
10
234
26
18
28
26
1.98
46534828--46534954
48
2.6
48
80
3
130
29
18
28
23
1.98
46534876--46535220
48
7.6
46
74
10
209
25
17
28
28
1.97
46535021--46535220
42
4.6
42
83
8
222
27
16
28
28
1.97
46546533--46546578
12
3.7
12
78
21
58
34
41
17
6
1.75
46546518--46546579
26
2.3
26
97
2
115
32
43
16
8
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46548820--46549090
47
5.8
47
78
10
236
30
17
27
24
1.97
46548871--46549090
93
2.4
94
82
6
268
30
16
27
25
1.97
46556008--46556086
29
2.7
29
90
0
113
39
13
22
24
1.91
46556078--46556174
51
1.9
51
84
0
131
31
13
24
29
1.93
46556142--46556494
59
6.0
58
81
7
397
34
11
22
31
1.90
46556146--46556483
178
1.9
177
85
4
475
35
11
22
30
1.89
46556129--46556492
118
3.1
118
82
4
446
33
12
23
30
1.91
46556454--46556520
29
2.3
29
82
7
84
20
17
26
34
1.96
46570357--46570407
3
17.0
3
95
0
84
62
0
3
33
1.13
46576730--46576834
40
2.6
41
80
8
126
23
23
27
24
2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284