genome.fa.s9.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  105  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34471925--34471949	12	2.1	12	100	0	50	52	0	8	40	1.31
34473263--34473326	12	5.3	12	71	0	56	54	20	14	10	1.69
34473254--34473326	24	3.0	24	93	0	128	52	21	13	12	1.74
34473623--34473650	13	2.2	13	100	0	56	46	25	7	21	1.76
34474603--34474695	25	3.8	24	83	11	118	35	19	24	20	1.96
34475996--34476046	17	3.0	17	88	0	75	33	15	13	37	1.87
34482639--34482742	45	2.3	45	85	6	131	26	15	27	29	1.96
34485561--34485798	131	1.8	130	88	0	368	27	19	18	34	1.95
34488604--34488663	30	2.0	30	93	0	102	58	10	3	28	1.46
34492454--34492491	20	1.9	19	94	5	67	10	44	31	13	1.77
34503117--34503189	33	2.2	32	79	18	78	47	2	6	42	1.44
34503875--34504237	182	2.0	182	98	0	699	35	19	21	23	1.96
34505169--34505494	44	7.6	42	71	13	202	27	22	20	30	1.98
34505202--34505488	87	3.4	83	73	12	233	27	22	20	28	1.99
34519359--34519387	15	2.0	15	93	6	51	72	0	6	20	1.07
34520169--34520203	18	1.9	18	88	0	52	34	0	0	65	0.93
34522681--34523142	174	2.7	172	86	5	657	27	11	27	32	1.92
34532880--34532942	3	20.7	3	90	3	99	66	1	0	31	1.01
34533561--34533601	3	13.3	3	94	5	73	65	0	0	34	0.93
34535794--34535968	89	2.0	89	93	0	296	24	18	22	34	1.96
34535934--34536414	45	10.7	45	70	12	220	28	21	18	31	1.97
34535973--34536416	90	4.9	88	73	12	348	28	21	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34535978--34536416	135	3.3	134	73	8	478	29	21	18	30	1.97
34535923--34536549	135	4.7	133	72	10	461	28	22	18	30	1.98
34536247--34536324	41	1.9	41	89	0	120	26	21	20	30	1.98
34535923--34536551	268	2.3	267	93	0	1060	27	22	19	30	1.98
34549526--34549593	26	2.6	26	92	2	109	16	27	1	54	1.51
34552679--34552738	28	2.3	25	83	11	75	61	3	5	30	1.33
34553230--34553265	18	2.0	18	88	0	54	69	0	8	22	1.15
34559811--34559887	38	2.0	38	97	0	145	15	33	2	48	1.59
34559933--34559972	18	2.2	19	90	4	64	15	5	10	70	1.32
34563892--34563937	20	2.3	19	82	10	56	34	0	0	65	0.93
34563880--34563964	31	2.8	29	76	22	86	36	0	1	62	1.03
34565748--34565774	6	4.5	6	100	0	54	0	14	0	85	0.61
34568888--34568943	27	2.1	27	96	0	103	37	5	25	32	1.78
34578124--34578196	22	3.1	24	75	20	73	56	8	5	30	1.51
34579482--34579508	14	1.9	14	100	0	54	29	7	55	7	1.55
34580379--34581013	75	8.0	75	81	9	317	33	19	17	29	1.95
34580601--34580635	14	2.5	14	90	0	52	57	5	20	17	1.60
34580537--34580783	89	2.7	89	91	5	388	32	20	18	28	1.96
34580690--34580724	14	2.5	14	90	0	52	57	5	20	17	1.60
34580708--34581020	77	4.2	75	86	8	408	32	19	17	30	1.95
34580300--34580954	333	2.0	325	84	7	840	34	19	17	28	1.95
34580708--34581008	152	2.0	150	85	8	412	30	20	17	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34581319--34583303	729	2.7	729	92	4	3120	27	20	16	35	1.94
34583305--34583490	81	2.4	78	81	7	191	31	19	17	31	1.95
34584261--34585875	807	2.0	807	100	0	3230	24	22	16	36	1.94
34585283--34586762	740	2.0	740	100	0	2960	26	20	17	35	1.95
34588432--34588465	16	2.1	16	100	0	68	17	11	29	41	1.85
34597535--34597599	22	2.7	24	79	18	73	58	7	4	29	1.46
34597612--34597661	24	2.0	26	84	7	68	50	2	10	38	1.48
34599592--34599689	23	4.3	23	90	2	162	31	26	21	20	1.98
34599599--34599687	45	2.0	45	95	0	160	31	26	22	19	1.97
34606964--34607061	23	4.3	23	89	2	153	31	25	21	21	1.98
34606971--34607059	45	2.0	45	93	0	151	31	25	22	20	1.98
34608874--34608900	14	1.9	14	100	0	54	29	7	55	7	1.55
34609187--34609212	3	8.7	3	100	0	52	30	0	0	69	0.89
34610474--34610555	39	2.1	41	86	8	118	59	3	10	25	1.47
34611467--34611507	16	2.4	17	80	19	50	53	0	0	46	1.00
34611471--34611505	16	2.3	15	90	5	52	54	0	0	45	0.99
34611515--34611556	18	2.4	17	77	14	50	50	0	0	50	1.00
34612100--34612141	22	1.9	22	95	0	75	23	4	19	52	1.65
34616118--34616197	24	3.3	24	76	0	79	15	28	18	37	1.91
34628915--34628972	30	1.9	30	85	0	80	13	27	36	22	1.92
34629813--34629838	12	2.2	12	100	0	52	7	7	0	84	0.77
34630980--34631007	14	2.0	14	100	0	56	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34633546--34633587	6	7.2	6	82	15	52	78	2	2	16	0.96
34633541--34633587	23	2.0	23	84	8	60	76	2	2	19	0.99
34633546--34633585	17	2.3	18	87	12	57	80	2	2	15	0.93
34634741--34634770	9	3.3	9	90	0	51	3	40	6	50	1.45
34641457--34641562	55	1.9	55	82	3	133	14	21	33	30	1.93
34650247--34650291	18	2.5	18	100	0	90	42	4	13	40	1.64
34651071--34651160	44	2.0	44	100	0	180	41	0	13	45	1.43
34651386--34651751	35	10.5	35	81	1	405	30	12	24	31	1.92
34657059--34657097	20	2.1	19	90	9	62	5	25	15	53	1.62
34659137--34659203	28	2.4	28	85	5	82	23	22	17	35	1.95
34659214--34659385	40	4.2	40	77	9	184	31	27	15	25	1.95
34659186--34659335	40	3.3	46	74	12	168	33	26	14	26	1.94
34659187--34659378	86	2.2	86	94	1	330	32	26	14	27	1.94
34670641--34670766	55	2.3	55	85	0	171	25	7	19	47	1.76
34671493--34671589	48	2.0	48	100	0	194	24	34	14	26	1.94
34674415--34674481	28	2.4	28	84	0	98	31	26	10	31	1.90
34674517--34674603	40	2.2	40	81	8	106	33	27	14	24	1.95
34676597--34676629	17	1.9	18	88	11	52	45	0	12	42	1.41
34685014--34685301	72	4.0	72	99	0	567	36	29	10	23	1.89
34697268--34697294	13	2.1	13	100	0	54	66	14	7	11	1.43
34698783--34698843	30	2.0	30	83	0	77	24	36	26	13	1.92
34701096--34701202	51	2.0	53	91	5	173	15	5	28	50	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34709796--34709830	12	3.2	11	88	11	54	8	25	2	62	1.38
34710160--34710184	13	1.9	13	100	0	50	24	28	24	24	2.00
34712879--34712916	18	2.1	19	90	5	60	21	21	5	52	1.66
34719455--34719484	15	2.0	15	93	0	51	50	0	10	40	1.36
34719509--34719540	10	3.3	10	95	4	57	31	6	0	62	1.20
34719701--34719742	16	2.6	16	96	0	75	7	26	0	66	1.17
34723244--34723304	9	7.2	8	77	18	54	19	1	0	78	0.83
34723243--34723304	14	4.4	14	80	12	65	20	1	0	77	0.85
34723247--34723305	7	8.0	8	76	17	56	22	1	0	76	0.88
34724237--34724272	12	3.2	12	88	11	51	83	0	11	5	0.80
34724237--34724279	11	3.8	11	85	11	52	81	0	13	4	0.84
34724242--34724279	6	6.5	6	81	6	51	81	0	15	2	0.80
34724851--34724880	15	2.0	15	93	0	51	50	0	10	40	1.36
34728522--34728553	10	3.3	10	95	4	57	62	0	6	31	1.20
34728578--34728606	15	1.9	15	100	0	58	41	6	0	51	1.28
34728900--34728944	6	7.5	6	100	0	90	84	0	15	0	0.62
34736909--34736962	24	2.3	23	87	6	74	74	11	1	12	1.16
34736905--34736967	16	3.8	17	71	10	58	74	9	1	14	1.13
34738483--34738530	22	2.2	21	79	17	53	70	2	4	22	1.15
34741625--34741707	40	2.1	40	86	0	112	22	14	25	37	1.92
34741638--34741728	40	2.3	40	84	0	119	24	14	25	36	1.93
34744643--34745052	47	8.7	48	72	10	251	27	19	29	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34744695--34745052	138	2.5	141	75	14	326	27	18	30	23	1.98
34760681--34760742	29	2.1	29	100	0	124	50	14	0	35	1.43
34771881--34771956	30	2.5	30	78	4	91	19	22	11	46	1.82
34771935--34772044	30	3.6	30	85	2	139	25	27	12	34	1.92
34781249--34781361	55	2.1	55	98	0	217	30	22	17	29	1.97
34786049--34786329	141	2.0	142	97	0	528	38	12	7	41	1.72
34797015--34797098	42	2.0	42	90	0	132	22	27	17	32	1.97
34797736--34797777	21	2.0	21	86	4	59	33	21	21	23	1.97
34799278--34799334	29	1.9	29	85	3	78	17	26	31	24	1.97
34805264--34805288	13	1.9	13	100	0	50	24	24	28	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284