genome.fa.s9.2.7.7.80.10.50.1000.272.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  272  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91354717--91354826	28	4.0	28	84	3	145	20	26	20	32	1.97
91354711--91354826	55	2.1	54	84	6	153	19	25	20	33	1.97
91355140--91355176	17	2.2	17	100	0	74	24	5	48	21	1.71
91356033--91356125	41	2.3	41	94	0	159	17	29	31	22	1.96
91364741--91364893	38	4.0	38	88	1	207	20	21	26	32	1.98
91371118--91371233	39	3.0	39	88	0	178	25	23	20	30	1.99
91373854--91373959	53	2.0	53	98	0	203	32	11	27	29	1.91
91374333--91374555	80	2.8	79	80	3	214	25	21	27	25	2.00
91374386--91374555	40	4.3	40	88	0	216	24	21	28	25	1.99
91376278--91376509	40	5.8	40	92	1	297	24	20	27	27	1.99
91382066--91382180	38	3.0	38	93	1	185	21	25	24	28	1.99
91387775--91387867	28	3.3	28	85	8	127	30	31	13	24	1.94
91390168--91390204	20	1.9	20	88	5	58	40	0	8	51	1.32
91392270--91392542	46	6.0	46	87	3	327	39	15	23	20	1.91
91392270--91392542	91	3.0	91	86	2	352	39	15	23	20	1.91
91392285--91392565	137	2.1	136	84	5	361	40	16	22	20	1.91
91396691--91396868	27	6.6	27	83	3	205	26	15	28	29	1.96
91396692--91396847	82	1.9	81	88	3	233	26	15	28	29	1.96
91396688--91396868	82	2.2	81	83	2	229	27	15	27	29	1.96
91404881--91405058	27	6.6	27	83	3	205	26	15	28	29	1.96
91404882--91405037	82	1.9	81	88	3	233	26	15	28	29	1.96
91404878--91405058	82	2.2	81	83	2	229	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91436023--91436049	12	2.2	12	100	0	54	51	7	0	40	1.30
91436537--91436714	27	6.6	27	83	3	205	26	15	28	29	1.96
91436538--91436693	82	1.9	81	88	3	233	26	15	28	29	1.96
91436534--91436714	82	2.2	81	83	2	229	27	15	27	29	1.96
91438218--91438316	7	14.1	7	100	0	198	42	43	0	14	1.45
91439455--91439591	43	3.2	43	78	10	147	29	24	18	27	1.98
91439436--91439591	43	3.7	43	77	11	144	27	26	19	26	1.99
91439436--91439591	85	1.8	85	83	5	208	27	26	19	26	1.99
91441742--91441864	49	2.5	50	81	7	146	34	16	19	29	1.93
91455130--91455163	17	1.9	18	94	5	61	5	5	5	82	0.95
91457984--91458062	30	2.8	29	83	11	83	36	2	3	56	1.31
91462705--91462731	3	9.0	3	100	0	54	33	0	33	33	1.58
91464844--91464985	78	1.9	77	88	4	216	42	8	16	31	1.78
91465032--91465242	65	3.2	65	64	20	164	43	7	5	44	1.55
91464974--91465389	135	3.1	136	92	1	674	41	8	5	45	1.56
91468193--91468280	41	2.1	41	95	0	158	12	28	10	48	1.73
91471884--91472101	46	4.7	46	98	0	382	20	22	28	28	1.98
91484549--91484717	48	3.7	47	75	13	165	26	18	25	30	1.98
91486887--91487057	93	1.8	93	96	0	315	28	29	21	21	1.98
91486882--91487054	46	3.7	46	80	13	219	28	28	21	21	1.98
91487477--91487536	30	2.0	30	90	0	93	30	25	8	36	1.85
91494046--91494083	19	2.0	20	85	15	53	39	23	0	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91494762--91494821	30	2.0	30	90	0	93	30	25	8	36	1.85
91503933--91503976	20	2.2	20	83	4	52	34	22	4	38	1.75
91504826--91504937	34	2.9	39	72	20	108	33	23	16	27	1.95
91506574--91506604	12	2.6	12	94	0	53	38	9	25	25	1.86
91519780--91519849	28	2.5	28	90	4	106	32	27	12	27	1.93
91523447--91523507	30	2.0	30	83	0	77	31	22	8	37	1.84
91534623--91535039	134	3.1	134	96	0	746	39	21	8	30	1.84
91534623--91535039	27	15.6	27	81	8	422	39	21	8	30	1.84
91534617--91535231	27	22.9	27	78	8	342	37	21	9	32	1.85
91534623--91535231	54	11.3	54	76	7	393	37	21	9	32	1.85
91535215--91535483	27	10.0	27	89	0	376	33	18	22	25	1.97
91535188--91535487	54	5.6	52	82	7	289	34	19	21	26	1.96
91535840--91535898	22	2.7	22	81	5	66	20	27	22	30	1.98
91536286--91536376	6	14.8	6	70	17	62	20	18	14	46	1.84
91536271--91536365	31	3.1	31	90	0	136	20	16	13	49	1.79
91538321--91538496	46	3.8	45	81	10	212	21	21	29	28	1.98
91538317--91538488	93	1.8	93	94	0	308	20	21	30	27	1.98
91539377--91539423	23	2.1	22	88	4	67	38	4	12	42	1.63
91540393--91540427	13	2.7	13	95	0	61	51	17	8	22	1.72
91540505--91540577	28	2.6	28	82	4	85	28	27	10	32	1.91
91541730--91541800	28	2.5	29	84	4	92	25	11	30	32	1.91
91549560--91549723	43	3.8	43	79	12	176	31	25	18	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91550175--91550200	7	3.7	7	100	0	52	73	15	0	11	1.11
91554992--91555032	21	2.0	21	90	4	66	26	26	34	12	1.92
91555910--91556083	88	2.0	88	96	0	321	33	23	6	36	1.80
91560346--91560389	10	3.5	13	79	20	58	68	6	4	20	1.31
91561502--91561599	30	3.3	30	68	9	83	28	28	15	27	1.96
91561572--91561617	19	2.4	19	100	0	92	30	26	19	23	1.98
91563306--91563350	12	3.8	12	97	2	83	75	0	6	17	1.01
91564278--91564334	11	5.5	10	73	22	55	77	1	17	3	1.00
91564267--91564334	21	3.2	20	80	12	66	76	2	17	2	1.04
91564278--91564334	5	11.0	5	77	17	55	77	1	17	3	1.00
91564278--91564334	16	3.7	14	80	17	60	77	1	17	3	1.00
91564415--91564496	30	2.7	31	81	5	96	65	1	21	10	1.30
91564420--91564489	24	2.9	24	74	6	61	62	1	24	11	1.36
91569368--91569730	182	2.0	182	96	0	663	32	26	16	23	1.96
91569557--91569814	129	2.0	129	97	0	489	33	25	17	23	1.96
91575681--91575743	29	2.2	29	88	5	92	26	15	22	34	1.94
91578797--91578884	44	2.0	44	97	0	167	32	2	26	38	1.69
91583018--91583084	30	2.3	29	94	2	116	25	16	23	34	1.95
91583601--91583667	30	2.3	29	94	2	116	25	16	23	34	1.95
91582826--91583992	583	2.0	583	100	0	2334	28	14	24	32	1.94
91585284--91585375	27	3.4	27	81	3	105	27	18	19	34	1.95
91587429--91587478	18	2.8	19	73	14	52	6	32	14	48	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91591920--91591954	18	1.9	18	94	0	61	34	2	11	51	1.53
91592190--91592601	207	2.0	207	97	0	770	22	31	15	30	1.95
91594010--91594067	20	2.9	20	81	0	71	32	36	13	17	1.89
91595658--91595684	10	2.7	10	100	0	54	77	7	0	14	0.97
91603713--91603762	23	2.2	23	86	13	68	42	18	14	26	1.87
91603850--91604030	54	3.4	54	83	0	254	37	13	14	33	1.86
91603849--91604031	81	2.3	81	89	0	276	37	13	14	33	1.86
91603850--91604031	27	6.7	27	86	0	229	37	13	14	34	1.86
91604562--91604607	24	1.9	24	86	8	67	73	2	17	6	1.14
91605848--91606068	39	5.6	39	94	0	361	24	22	26	26	2.00
91615295--91615329	18	1.9	18	88	0	52	34	2	14	48	1.58
91620997--91621045	18	2.7	18	87	0	71	42	10	20	26	1.84
91623944--91624028	40	2.2	40	84	2	109	28	31	22	17	1.97
91626315--91626339	4	6.2	4	100	0	50	24	0	0	76	0.80
91626527--91626567	20	2.0	20	85	9	55	46	17	7	29	1.74
91627127--91627201	39	1.9	39	94	0	132	24	13	28	34	1.93
91630676--91630733	27	2.1	27	81	6	64	29	18	17	34	1.94
91630716--91631033	27	12.2	27	75	7	192	32	9	20	38	1.84
91630714--91631026	53	6.0	54	79	9	211	32	9	19	38	1.84
91630728--91631046	80	4.1	80	79	8	336	31	9	19	39	1.83
91630805--91630892	45	2.0	45	93	0	149	35	10	15	38	1.82
91630752--91630958	98	2.1	99	81	4	240	31	9	20	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91630852--91631045	27	7.3	27	82	4	214	32	8	18	40	1.80
91631361--91631480	28	4.3	28	90	0	186	26	35	17	20	1.95
91639868--91639966	27	3.7	26	81	8	99	38	19	21	21	1.94
91639892--91639981	28	3.3	28	81	4	103	40	22	18	18	1.92
91644040--91644360	48	6.9	48	90	5	496	30	28	7	33	1.84
91644266--91644346	40	2.0	40	97	0	153	35	27	3	33	1.75
91644839--91644933	50	1.9	50	93	0	163	28	21	6	44	1.76
91646856--91646955	28	3.5	28	81	8	130	32	30	17	21	1.95
91646883--91646984	29	3.6	29	78	7	109	28	31	17	22	1.97
91646856--91647016	57	2.8	57	88	1	216	31	29	17	21	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284