genome.fa.s9.2.7.7.80.10.50.1000.208.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  208  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69188387--69188430	21	2.1	21	82	0	52	31	9	25	34	1.87
69189496--69189552	26	2.2	26	81	6	62	63	3	7	26	1.36
69189599--69189647	14	3.8	13	76	15	57	53	0	2	44	1.12
69189591--69189644	26	2.1	24	83	13	63	53	0	3	42	1.18
69189832--69189869	20	1.9	20	88	0	58	71	0	2	26	1.00
69189912--69189960	14	3.8	13	76	15	57	53	0	2	44	1.12
69189904--69189957	26	2.1	24	83	13	63	53	0	3	42	1.18
69190058--69190116	21	2.7	23	78	14	63	54	0	8	37	1.31
69190257--69190306	14	3.2	15	88	11	66	66	0	6	28	1.15
69190254--69190295	14	3.0	14	100	0	84	64	0	7	28	1.20
69190274--69190426	20	7.7	19	74	19	118	59	0	4	35	1.23
69190365--69190420	9	6.6	9	73	22	50	58	0	1	39	1.08
69190361--69190432	29	2.6	29	85	10	89	62	0	1	36	1.04
69194774--69194864	39	2.3	39	76	12	96	51	7	3	37	1.47
69214395--69214502	28	3.9	28	84	4	105	37	17	23	22	1.94
69233980--69234034	21	2.6	21	100	0	110	34	18	12	34	1.89
69234264--69234333	35	2.0	35	97	0	131	32	20	8	38	1.83
69237438--69238318	343	2.6	343	88	2	1270	37	16	14	30	1.89
69238371--69238455	17	5.0	17	73	0	53	30	18	29	21	1.97
69238423--69238458	17	2.1	17	89	0	54	36	25	25	13	1.93
69242697--69242732	15	2.3	17	81	18	51	0	30	0	69	0.89
69249904--69250166	47	5.6	46	73	13	171	27	19	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69249904--69250121	94	2.4	91	82	8	237	26	20	28	24	1.99
69251004--69251108	55	1.9	55	92	0	174	18	17	34	30	1.93
69256076--69256152	39	2.0	39	97	0	145	27	11	27	33	1.91
69259568--69259600	17	1.9	17	93	0	57	21	27	33	18	1.96
69262613--69262733	59	2.0	60	85	4	165	38	17	20	23	1.93
69263540--69263598	32	1.9	30	83	13	75	64	11	11	11	1.50
69264084--69264108	11	2.3	11	100	0	50	64	16	8	12	1.49
69264972--69265031	31	1.9	32	86	3	86	45	8	10	36	1.68
69270853--69271227	189	2.0	189	98	0	723	29	17	20	32	1.96
69278211--69278270	31	1.9	32	86	3	86	36	10	8	45	1.68
69280498--69280616	59	2.0	59	85	3	159	26	20	15	37	1.92
69280586--69282414	927	2.0	929	94	0	3216	32	16	15	35	1.90
69284178--69284221	22	2.0	21	86	4	61	43	15	6	34	1.74
69284216--69284266	19	2.7	19	96	0	93	39	15	9	35	1.81
69287699--69287762	25	2.6	25	90	2	94	15	12	12	59	1.61
69288583--69288696	60	1.9	59	89	1	174	27	18	16	37	1.92
69292041--69292187	73	2.0	73	100	0	294	34	16	10	39	1.82
69292591--69292639	18	2.8	17	78	9	53	34	0	2	63	1.06
69292591--69292676	36	2.4	36	77	15	88	37	1	2	59	1.18
69299456--69299588	35	3.6	36	81	9	153	33	24	10	31	1.89
69304059--69304134	38	2.0	38	100	0	152	31	13	23	31	1.93
69305323--69305467	40	3.6	40	85	4	193	25	24	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69313272--69313456	79	2.3	81	84	7	236	24	22	27	25	2.00
69313273--69313456	40	4.6	40	83	9	216	24	22	27	25	2.00
69313325--69313489	79	2.1	79	84	6	210	26	21	27	25	1.99
69328748--69328779	11	2.9	11	95	0	55	3	18	21	56	1.56
69337546--69337600	25	2.2	26	86	3	76	36	20	3	40	1.70
69337782--69337809	14	2.0	14	100	0	56	35	42	14	7	1.73
69339101--69339146	22	2.1	22	84	11	60	47	6	4	41	1.49
69342272--69342305	10	3.4	10	91	0	59	20	11	0	67	1.21
69349741--69349768	5	5.6	5	100	0	56	17	0	0	82	0.68
69350996--69351020	13	1.9	13	100	0	50	8	44	32	16	1.76
69352954--69352978	6	4.2	6	100	0	50	80	0	0	20	0.72
69354916--69355341	215	2.0	215	94	0	746	35	17	14	32	1.90
69355966--69355990	13	1.9	13	100	0	50	8	44	32	16	1.76
69357924--69357948	6	4.2	6	100	0	50	80	0	0	20	0.72
69364216--69364262	6	7.5	6	90	9	76	80	2	0	17	0.80
69364216--69364265	26	2.0	25	92	4	82	80	2	0	18	0.82
69364289--69364331	9	4.8	9	94	0	77	25	9	18	46	1.79
69369071--69369096	12	2.2	12	100	0	52	34	15	23	26	1.94
69370582--69370712	63	2.1	63	82	0	154	25	23	27	23	2.00
69373768--69373814	21	2.3	21	82	10	53	44	21	8	25	1.80
69375767--69375928	43	3.8	43	78	8	168	23	15	27	33	1.95
69378768--69379089	159	2.0	159	100	0	644	39	14	18	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69391899--69392087	68	2.8	68	83	0	236	43	13	11	31	1.80
69391899--69392087	34	5.6	34	79	1	209	43	13	11	31	1.80
69392981--69393030	19	2.5	21	75	15	52	70	0	10	20	1.16
69394767--69394857	47	2.0	46	93	2	155	54	8	7	28	1.58
69395437--69395463	5	5.4	5	100	0	54	81	0	0	18	0.69
69396458--69396548	30	3.0	29	73	19	80	30	8	3	57	1.46
69404735--69404774	6	6.3	6	83	11	53	77	2	5	15	1.04
69404755--69404821	17	4.0	17	79	11	59	71	0	2	25	1.00
69408792--69408826	17	2.1	17	88	0	52	48	5	17	28	1.69
69413621--69413651	16	1.9	16	93	0	53	9	9	9	70	1.33
69416389--69416424	4	9.0	4	100	0	72	25	0	25	50	1.50
69417955--69418066	37	3.2	37	68	20	105	41	3	1	53	1.29
69420340--69420544	45	4.6	43	82	10	209	22	17	15	45	1.85
69420342--69420544	89	2.3	90	84	9	272	22	16	14	45	1.84
69422569--69422610	22	1.9	22	90	0	66	30	4	0	64	1.14
69422573--69422605	17	1.9	17	93	0	57	30	6	0	63	1.18
69425641--69425687	22	2.2	21	84	3	58	36	21	8	34	1.84
69425658--69425736	19	4.2	19	90	9	126	35	16	10	37	1.82
69425658--69425730	36	2.0	38	94	5	132	35	15	10	38	1.82
69425659--69425746	36	2.4	35	85	14	117	35	15	10	38	1.82
69426477--69426578	44	2.3	44	86	1	143	27	19	21	31	1.97
69427535--69427601	7	8.8	8	74	11	52	4	10	0	85	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69427535--69427602	23	3.1	21	82	12	84	4	10	0	85	0.73
69427534--69427601	22	3.0	23	83	16	97	5	10	0	83	0.79
69427535--69427601	31	2.2	30	84	7	82	4	10	0	85	0.74
69427534--69427602	24	3.0	22	79	14	77	5	10	0	84	0.78
69433229--69433275	22	2.2	21	84	3	58	36	21	8	34	1.84
69433246--69433343	19	5.2	19	91	7	155	35	15	10	38	1.81
69433246--69433343	36	2.6	37	88	9	144	35	15	10	38	1.81
69434177--69434207	16	2.0	16	93	6	55	12	6	9	70	1.31
69434729--69434768	11	3.7	11	83	3	55	0	22	0	77	0.77
69434738--69434776	20	2.0	20	84	0	51	2	20	0	76	0.90
69434760--69434819	25	2.3	26	80	5	68	13	10	8	68	1.39
69438104--69438140	18	2.1	18	89	0	56	21	16	0	62	1.33
69442107--69442149	2	21.5	2	100	0	86	0	48	0	51	1.00
69446511--69446542	14	2.3	14	100	0	64	28	21	25	25	1.99
69447122--69447149	5	5.6	5	100	0	56	17	0	0	82	0.68
69456917--69456988	35	2.1	35	97	0	135	34	12	19	33	1.89
69462941--69462991	21	2.4	21	80	0	66	21	0	29	49	1.50
69463184--69463234	21	2.5	20	70	17	52	35	27	9	27	1.88
69464066--69464301	127	1.9	127	94	0	418	38	16	16	29	1.90
69464769--69464799	14	2.2	14	94	0	53	67	0	0	32	0.91
69464771--69464807	19	2.0	18	94	5	65	67	0	0	32	0.91
69465123--69465165	11	3.7	11	84	6	50	44	32	0	23	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69465227--69465299	18	4.0	18	71	16	69	16	1	56	26	1.49
69465245--69465344	37	3.2	29	77	11	74	17	2	50	31	1.57
69465241--69465315	37	2.0	37	94	0	132	17	1	53	28	1.52
69467690--69467883	39	5.0	39	87	1	257	18	20	28	32	1.96
69471140--69471264	49	2.6	49	81	2	144	30	28	16	24	1.97
69484927--69484969	18	2.4	18	92	0	68	88	0	6	4	0.63
69487110--69487135	8	3.2	8	100	0	52	84	0	0	15	0.62
69487503--69487543	19	2.2	20	86	8	59	31	4	0	63	1.15
69488087--69488124	18	2.1	18	100	0	76	15	10	21	52	1.72
69492522--69492567	20	2.4	19	77	3	56	15	2	36	45	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284