genome.fa.s9.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  183  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61967877--61967986	23	4.8	23	71	16	86	20	26	19	33	1.96
61975752--61975810	29	2.2	27	85	14	79	25	11	10	52	1.69
61978649--61978710	22	2.8	22	82	0	70	40	20	20	17	1.92
61979082--61979718	27	23.7	26	78	7	589	31	9	19	39	1.84
61979102--61979717	81	7.6	81	81	7	716	31	9	19	39	1.83
61987424--61987457	17	1.9	18	88	5	52	38	5	5	50	1.51
61994393--61994598	27	7.6	27	83	2	243	40	19	7	31	1.80
61994400--61994659	27	9.7	26	79	9	177	39	21	8	30	1.84
61994393--61994653	81	3.2	79	82	4	297	40	21	8	29	1.83
61994401--61994659	54	4.8	54	78	6	220	39	21	8	30	1.84
61994691--61994828	27	5.1	27	84	0	188	33	18	22	25	1.97
61995421--61995528	27	4.0	27	79	5	94	21	23	19	36	1.95
61995646--61995758	6	18.3	6	72	18	81	18	19	15	46	1.83
61995646--61995737	25	3.7	25	89	0	148	18	20	15	45	1.85
61996201--61996246	22	2.1	22	100	0	92	30	13	19	36	1.90
61997742--61997883	27	5.3	27	89	0	194	40	19	8	30	1.81
61997750--61997964	54	4.0	54	76	3	209	39	19	9	31	1.84
61997742--61997891	81	1.9	81	88	0	228	41	19	8	30	1.81
61997742--61997947	81	2.5	81	83	1	225	39	21	9	29	1.84
61997742--61997965	27	8.3	27	81	3	184	39	20	9	30	1.84
61997767--61998002	27	8.7	27	79	2	98	38	20	9	32	1.84
61997986--61998119	27	5.0	27	80	0	151	35	19	20	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61998526--61998573	22	2.2	22	85	7	62	22	29	20	27	1.99
61998732--61998839	27	4.0	26	83	5	126	19	23	21	36	1.95
61998957--61999060	6	16.8	6	71	16	79	18	21	13	47	1.82
61998957--61999048	25	3.7	25	92	0	157	18	21	14	45	1.84
62002854--62002891	19	2.0	19	100	0	76	26	10	10	52	1.68
62006515--62006645	47	2.8	47	82	3	147	23	16	27	32	1.96
62009021--62009053	17	1.9	17	88	11	50	72	0	9	18	1.10
62015043--62015115	38	1.9	37	91	2	119	41	20	16	21	1.90
62020561--62020660	50	2.0	51	88	2	148	30	25	17	28	1.97
62023235--62023281	23	2.1	23	92	4	78	44	17	12	25	1.84
62023273--62023345	24	3.0	24	83	4	74	34	17	21	26	1.96
62023801--62023893	27	3.4	27	72	11	89	33	21	6	38	1.79
62023797--62023908	56	2.0	56	94	0	197	35	19	5	39	1.75
62023801--62023905	27	3.8	27	71	12	88	36	20	5	38	1.76
62029133--62029205	34	2.1	34	82	2	83	41	13	8	36	1.75
62033178--62033211	16	2.1	16	94	0	59	35	8	20	35	1.84
62036920--62037009	27	3.2	27	81	7	101	33	22	24	20	1.97
62037115--62037177	28	2.3	28	89	5	94	30	4	30	34	1.78
62044774--62044888	55	2.1	56	82	8	137	34	20	24	20	1.96
62044799--62044888	28	3.2	27	84	7	110	32	22	24	21	1.98
62044799--62044888	27	3.2	27	82	7	101	32	22	24	21	1.98
62044994--62045058	28	2.3	28	94	0	112	30	7	27	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62045791--62046113	161	2.0	161	98	0	628	29	13	25	31	1.94
62062324--62062364	21	2.0	21	100	0	82	34	9	14	41	1.79
62065129--62065155	13	2.1	13	100	0	54	14	37	33	14	1.88
62066491--62066573	33	2.5	33	74	3	87	22	24	19	33	1.97
62066863--62066887	13	1.9	13	100	0	50	28	8	24	40	1.83
62069041--62069078	16	2.4	16	86	13	60	36	0	0	63	0.95
62069115--62069276	12	13.7	12	73	20	71	32	2	1	63	1.15
62069117--62069276	26	6.0	26	67	20	73	32	2	1	63	1.15
62069155--62069233	14	5.6	14	80	17	83	32	5	1	60	1.26
62069155--62069270	43	2.9	42	79	13	102	32	3	0	62	1.17
62069115--62069284	28	6.5	26	71	21	108	32	2	1	62	1.18
62069116--62069284	29	5.4	31	72	18	111	32	2	1	63	1.18
62069115--62069276	76	2.1	77	80	10	183	32	2	1	63	1.15
62069662--62069696	18	1.9	18	88	0	52	17	0	8	74	1.06
62073343--62073383	14	2.9	15	89	7	59	56	4	36	2	1.34
62080554--62080859	44	7.1	44	77	10	258	33	13	27	25	1.94
62080536--62080750	87	2.5	88	86	1	306	32	13	26	26	1.94
62080712--62081087	165	2.3	167	89	1	567	33	13	25	27	1.93
62080909--62081043	45	3.1	44	66	20	104	34	11	24	29	1.91
62080789--62080997	39	5.1	39	70	18	156	33	14	25	27	1.94
62080537--62081088	84	6.5	84	82	6	560	33	13	26	26	1.93
62081024--62081235	69	3.1	69	89	0	307	30	14	27	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62082712--62082828	16	7.1	16	73	13	78	34	1	1	62	1.15
62082788--62082952	7	25.9	7	71	21	82	32	2	0	64	1.11
62082793--62082952	12	13.2	12	73	11	103	32	2	0	64	1.11
62082787--62082927	33	4.4	31	71	17	92	31	2	0	64	1.13
62083345--62083379	18	1.9	18	88	0	52	17	0	8	74	1.06
62083665--62083820	83	1.9	83	98	0	303	41	7	10	40	1.68
62086806--62086865	30	2.0	30	83	6	77	36	10	25	28	1.88
62087512--62087757	49	4.9	50	84	2	316	25	18	27	28	1.98
62087617--62087700	28	3.2	28	65	25	83	23	16	29	29	1.96
62090062--62090095	2	17.0	2	87	0	50	5	0	44	50	1.26
62091790--62091843	27	2.0	27	92	0	90	29	9	9	51	1.65
62093592--62093632	21	2.0	21	100	0	82	48	14	17	19	1.81
62095517--62095605	2	44.5	2	90	0	142	1	46	0	52	1.07
62099461--62099578	43	2.7	43	78	7	123	31	27	14	27	1.95
62101909--62101941	17	1.9	17	93	0	57	15	15	0	69	1.19
62106884--62107149	125	2.1	125	100	0	532	27	28	22	21	1.99
62117311--62117351	18	2.3	18	86	0	55	53	12	12	21	1.70
62121053--62121182	43	3.0	43	77	6	129	29	26	20	23	1.99
62131570--62131699	43	3.0	43	80	8	131	32	27	18	21	1.97
62132349--62132377	14	2.0	15	93	6	51	51	20	0	27	1.47
62136183--62136289	53	2.0	53	92	0	178	44	27	8	19	1.79
62139742--62139776	10	3.5	10	88	0	52	51	20	2	25	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62144718--62144770	21	2.5	21	81	9	63	41	0	9	49	1.35
62147481--62147537	20	2.8	20	78	0	60	35	17	8	38	1.81
62147513--62147621	20	5.5	19	75	6	74	38	11	8	42	1.70
62147502--62147616	59	1.9	60	82	8	146	40	13	7	39	1.73
62150234--62150365	70	1.9	68	84	3	174	21	8	24	46	1.78
62163988--62164012	3	8.3	3	100	0	50	32	0	0	68	0.90
62165233--62165276	22	2.0	22	86	0	61	52	0	0	47	1.00
62165296--62165337	13	2.9	14	80	13	50	54	0	0	45	0.99
62165300--62165336	16	2.3	16	86	13	58	59	0	0	40	0.97
62178160--62178296	60	2.3	60	81	8	145	24	24	20	29	1.99
62183095--62183155	30	2.1	29	93	3	104	36	21	16	26	1.94
62190347--62190407	30	2.1	29	96	3	113	36	22	16	24	1.94
62195072--62195108	14	2.6	14	91	0	56	21	5	8	64	1.40
62200114--62200216	42	2.5	42	87	3	136	17	23	16	42	1.88
62200149--62200259	21	5.4	21	71	2	73	13	19	20	45	1.84
62200117--62200240	42	3.0	42	83	2	124	16	22	17	42	1.89
62202491--62202515	12	2.1	12	100	0	50	8	32	0	60	1.26
62204320--62204385	27	2.4	27	73	9	71	21	24	10	43	1.83
62210051--62210381	166	2.0	166	92	1	547	23	28	25	22	1.99
62215458--62215520	31	2.1	31	87	3	92	26	3	11	58	1.47
62219360--62219526	40	4.2	40	88	0	235	20	22	29	26	1.99
62219360--62219535	80	2.2	80	90	0	271	20	22	30	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62219695--62219749	25	2.2	25	90	6	85	29	12	30	27	1.93
62233594--62234004	47	8.7	47	97	0	750	32	8	30	29	1.86
62234123--62234201	37	2.1	37	90	0	122	24	18	31	25	1.98
62235335--62235497	56	2.9	56	86	1	211	33	23	14	27	1.94
62244252--62244350	28	3.5	29	76	17	102	26	20	29	24	1.99
62244224--62244385	56	2.9	57	82	9	190	26	17	30	25	1.98
62244224--62244378	28	5.6	27	72	18	97	25	18	30	25	1.97
62244428--62244526	32	3.1	32	88	0	126	38	10	21	30	1.86
62248986--62249046	31	2.0	31	90	0	95	26	24	16	32	1.96
62249255--62249362	25	4.4	25	88	5	141	27	22	22	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284