genome.fa.s9.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  174  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58470508--58470611	46	2.3	46	78	8	106	29	1	1	66	1.13
58470593--58470667	26	2.9	26	80	9	75	29	1	4	65	1.19
58470532--58470648	62	1.9	62	81	10	141	30	2	3	63	1.24
58470597--58470656	31	2.0	32	83	9	81	26	1	3	68	1.15
58470620--58470661	14	3.1	14	76	13	52	33	0	4	61	1.17
58470867--58470966	18	6.1	16	68	18	55	27	2	2	69	1.11
58470854--58470982	14	8.5	15	69	21	74	27	1	2	68	1.10
58470924--58471027	46	2.3	46	78	8	106	29	1	1	66	1.13
58471036--58471077	14	3.1	14	76	13	52	33	0	4	61	1.17
58472647--58472738	28	3.4	27	79	13	118	35	13	25	26	1.92
58472762--58473011	51	4.9	51	91	0	401	32	12	25	29	1.92
58491462--58491491	15	1.9	16	93	6	53	20	20	6	53	1.67
58492733--58494416	840	2.0	838	98	0	2936	32	15	16	34	1.91
58497579--58497653	26	2.9	26	80	9	75	29	1	4	65	1.19
58497583--58497642	31	2.0	32	83	9	81	26	1	3	68	1.15
58497606--58497647	14	3.1	14	76	13	52	33	0	4	61	1.17
58503515--58503612	49	2.0	49	97	0	187	30	23	16	29	1.96
58507077--58507196	64	1.9	64	82	3	152	30	20	25	24	1.99
58507258--58507375	40	3.0	39	86	2	164	24	20	28	26	1.99
58513242--58513367	47	2.7	46	80	12	150	23	29	16	30	1.96
58513146--58513367	94	2.4	92	82	8	243	24	28	18	28	1.98
58515496--58515626	40	3.3	40	81	1	147	28	27	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58521063--58521287	80	2.8	80	84	9	298	24	28	22	24	2.00
58521065--58521287	119	1.9	120	84	8	303	24	27	22	25	2.00
58521044--58521287	40	6.1	39	82	11	264	24	27	22	25	2.00
58526730--58526881	40	3.8	40	85	2	180	26	28	21	23	1.99
58536690--58536897	39	5.3	39	90	2	335	24	21	24	30	1.99
58541236--58541364	65	2.0	65	89	0	195	31	21	20	26	1.98
58541615--58542176	282	2.0	282	98	0	1079	31	19	22	26	1.98
58563197--58563300	54	1.9	54	88	0	154	34	19	17	28	1.94
58578663--58578699	14	2.6	14	91	4	56	37	0	45	16	1.47
58580778--58580838	30	2.0	30	100	0	122	37	9	19	32	1.85
58603402--58603452	27	1.9	26	84	4	66	19	15	3	60	1.50
58610861--58610911	25	2.0	26	88	3	77	37	23	11	27	1.90
58610948--58611008	10	5.9	10	74	11	52	34	13	19	32	1.90
58610948--58611005	21	2.8	21	84	5	73	34	13	20	31	1.92
58622375--58622428	26	2.1	26	100	0	108	51	14	14	18	1.76
58625057--58625117	30	2.0	30	87	6	88	36	8	26	29	1.85
58625763--58625959	50	3.9	50	85	1	261	27	18	25	28	1.98
58629435--58629476	13	3.1	14	81	18	54	42	0	0	57	0.99
58636412--58636503	44	2.1	42	84	9	114	28	14	23	33	1.94
58643004--58643062	25	2.5	24	80	5	57	33	18	15	32	1.92
58643023--58643075	25	2.1	25	89	0	79	28	18	20	32	1.97
58644515--58644645	43	3.0	43	80	4	165	25	14	27	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58648059--58648160	27	3.8	26	82	11	116	17	23	20	38	1.93
58650029--58650137	43	2.5	43	84	0	146	29	13	20	36	1.91
58650917--58650971	22	2.5	22	100	0	110	25	5	23	45	1.74
58653490--58653526	18	2.1	18	100	0	74	45	16	16	21	1.84
58657001--58657104	43	2.4	43	88	0	154	26	15	22	35	1.94
58660704--58660765	26	2.4	26	71	10	63	32	16	19	32	1.94
58667897--58667929	13	2.6	13	95	4	59	54	15	0	30	1.41
58677392--58677835	74	6.0	74	99	0	879	33	20	6	39	1.79
58681053--58681320	46	5.8	45	74	12	222	22	19	27	29	1.98
58681051--58681312	92	2.8	92	91	1	416	22	20	27	29	1.98
58686663--58686931	46	5.8	45	74	11	249	22	20	29	27	1.98
58686709--58686877	47	3.6	47	74	10	184	23	20	30	26	1.98
58686659--58686923	93	2.8	93	96	0	476	22	20	30	26	1.98
58701149--58701234	42	2.0	42	91	4	138	20	17	24	37	1.94
58705074--58705098	13	1.9	13	100	0	50	8	36	40	16	1.77
58721323--58721429	47	2.3	47	85	3	135	26	13	26	34	1.93
58729020--58729117	47	2.1	47	92	0	160	33	11	28	26	1.91
58729109--58729181	36	2.0	36	100	0	146	30	8	35	26	1.85
58729145--58729263	46	2.6	46	90	0	175	34	9	31	25	1.87
58731601--58731652	22	2.4	22	83	0	68	15	15	17	51	1.76
58734686--58734723	18	2.1	19	95	5	69	39	0	5	55	1.23
58737195--58737344	67	2.2	67	81	8	171	32	17	28	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58737219--58737402	67	2.8	64	77	8	194	29	17	29	22	1.97
58740672--58740724	25	2.1	25	82	0	61	30	7	15	47	1.73
58740686--58740736	25	2.0	25	84	0	66	31	5	15	47	1.70
58751651--58751875	40	5.6	40	83	5	258	25	24	27	23	2.00
58751651--58751911	80	3.3	80	83	3	312	25	24	26	23	2.00
58751651--58751911	120	2.2	120	83	6	325	25	24	26	23	2.00
58755120--58755165	24	1.9	24	82	8	58	43	2	10	43	1.51
58757512--58757593	40	2.0	40	97	0	155	23	37	9	29	1.87
58761216--58761256	17	2.4	17	95	0	73	19	12	34	34	1.89
58768681--58768725	21	2.1	21	100	0	90	35	11	40	13	1.80
58770361--58770395	17	2.1	17	100	0	70	11	17	17	54	1.71
58773568--58773682	42	2.8	42	80	4	126	27	13	27	31	1.93
58773580--58773719	42	3.3	42	75	10	115	28	15	27	28	1.96
58775290--58775458	46	3.6	45	75	9	135	23	28	19	27	1.98
58789751--58789791	19	2.2	19	86	0	55	51	2	9	36	1.48
58791783--58791878	39	2.5	39	91	3	149	16	22	31	29	1.96
58792265--58794122	616	3.0	616	96	0	3392	35	10	18	34	1.86
58797132--58797180	25	2.0	25	95	0	89	26	12	18	42	1.85
58802114--58803097	80	12.3	80	97	0	1772	23	20	28	26	1.99
58801995--58803097	40	27.6	40	90	1	1554	24	20	28	26	1.99
58809260--58809307	21	2.2	22	88	7	71	10	0	14	75	1.06
58809241--58809307	33	2.0	33	85	0	89	10	1	11	76	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58812144--58812233	23	4.0	22	81	4	99	16	3	36	43	1.65
58812145--58812269	46	2.8	44	77	7	117	16	4	34	44	1.69
58812144--58812244	23	4.4	23	78	8	75	15	4	35	43	1.69
58813982--58814006	4	6.2	4	100	0	50	76	0	0	24	0.80
58814306--58814364	23	2.8	21	80	10	57	62	5	1	30	1.26
58815621--58815656	12	3.3	11	88	11	56	8	0	16	75	1.04
58816963--58817021	30	2.0	30	93	0	100	27	10	20	42	1.84
58818060--58818165	37	2.9	37	95	0	185	26	32	17	23	1.97
58818372--58818565	47	4.1	47	88	0	271	26	29	11	32	1.91
58818465--58818536	22	3.1	22	64	24	58	23	29	13	33	1.93
58823260--58823758	47	10.6	47	93	1	784	31	7	29	31	1.85
58823877--58823994	37	3.2	37	95	0	209	23	19	32	24	1.98
58823877--58824014	37	3.7	37	88	3	188	26	18	29	26	1.98
58847252--58847337	42	2.0	42	95	0	154	25	16	27	30	1.97
58848439--58848571	57	2.3	58	82	3	173	28	15	28	27	1.96
58848441--58848578	28	4.9	28	75	5	107	27	17	27	27	1.98
58850773--58850923	28	5.4	28	92	1	232	35	26	11	26	1.90
58852965--58853108	78	1.8	78	92	2	245	22	24	15	38	1.92
58861300--58861387	44	2.0	44	97	0	167	31	42	4	21	1.73
58866872--58867075	53	3.8	53	74	6	160	20	23	19	37	1.94
58871873--58871902	15	2.1	15	93	6	53	30	6	26	36	1.82
58873189--58873297	37	2.9	37	91	0	173	26	29	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58873442--58873682	47	5.1	47	94	0	410	25	27	11	36	1.90
58873492--58873660	22	7.3	22	62	22	60	24	27	12	35	1.91
58877803--58877917	43	2.7	43	86	0	158	26	21	26	24	1.99
58878544--58878573	11	2.7	11	94	0	51	43	6	10	40	1.64
58887246--58887421	46	3.8	46	79	10	196	28	28	21	21	1.99
58887254--58887424	93	1.8	93	92	0	288	27	28	22	21	1.99
58892612--58892647	10	3.7	10	92	7	65	30	19	0	50	1.48
58892608--58892649	9	4.7	9	85	11	59	30	19	0	50	1.48
58893700--58893750	15	3.4	15	81	13	61	13	11	11	62	1.54
58894235--58894362	49	2.6	49	93	0	220	25	21	25	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284