genome.fa.s9.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  207  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68909912--68910009	52	1.9	49	89	6	151	41	22	17	18	1.90
68910584--68910609	13	2.0	13	100	0	52	23	30	7	38	1.83
68918300--68918346	15	3.2	15	72	6	51	72	0	0	27	0.85
68928388--68928420	15	2.1	17	88	11	52	39	0	15	45	1.46
68928708--68928760	25	2.2	24	86	10	72	15	20	22	41	1.89
68943985--68944082	25	4.0	25	76	5	92	28	16	28	26	1.97
68946800--68946848	20	2.4	21	82	6	64	61	2	4	32	1.26
68946769--68946847	20	3.9	20	69	14	63	65	1	3	29	1.17
68948860--68948908	6	8.8	6	80	13	52	57	0	0	42	0.99
68948865--68948905	22	2.0	20	90	9	64	63	0	0	36	0.95
68948863--68948908	16	2.8	16	78	15	58	56	0	0	43	0.99
68949702--68949902	100	2.0	100	100	0	402	32	14	16	35	1.90
68961796--68961858	29	2.2	29	85	0	81	28	12	6	52	1.64
68963718--68963749	14	2.3	14	100	0	64	31	46	15	6	1.71
68968845--68968874	14	2.1	14	100	0	60	33	46	13	6	1.69
68970513--68970575	30	2.1	30	85	5	83	57	12	3	26	1.51
68973135--68973227	44	2.1	45	85	2	125	16	30	19	34	1.93
68973135--68973227	22	4.2	22	76	6	98	16	30	19	34	1.93
68977356--68977403	19	2.4	21	82	10	64	50	4	2	43	1.33
68985729--68985777	26	1.9	25	83	4	62	51	2	0	46	1.12
68986373--68986469	40	2.4	40	84	5	115	43	7	5	44	1.54
68986399--68986479	40	2.0	40	97	0	153	41	7	8	41	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68987576--68987613	18	2.2	17	90	9	60	34	10	10	44	1.73
68988361--68988397	18	2.1	18	94	0	65	16	29	27	27	1.97
68989511--68989579	34	2.0	34	97	0	129	50	13	11	24	1.74
68989635--68989672	18	2.1	18	100	0	76	44	5	18	31	1.72
68989953--68990008	26	2.2	25	81	9	67	58	1	0	39	1.08
69019694--69019741	21	2.3	21	85	0	60	20	27	35	16	1.94
69019704--69019744	21	2.0	21	95	0	73	17	26	36	19	1.94
69019845--69019900	21	2.7	21	78	10	69	23	33	23	19	1.97
69026437--69026537	41	2.5	41	96	1	186	38	0	1	59	1.09
69026524--69026573	26	2.0	25	88	7	75	48	0	0	52	1.00
69026483--69026608	64	2.0	64	81	10	150	43	0	2	53	1.13
69026561--69026622	20	3.2	20	77	8	58	35	1	4	58	1.29
69034512--69034555	21	2.1	21	91	0	70	20	29	20	29	1.98
69040121--69040190	29	2.2	32	78	14	83	55	20	10	14	1.67
69040131--69040189	29	2.0	30	86	6	84	52	20	11	15	1.73
69040407--69040449	21	2.1	20	86	4	59	0	46	18	34	1.50
69040863--69040891	13	2.1	14	93	6	51	55	10	0	34	1.34
69041176--69041204	13	2.1	14	93	6	51	55	10	0	34	1.34
69040799--69041425	313	2.0	313	100	0	1254	43	14	9	32	1.78
69046270--69046407	9	15.3	9	71	18	74	38	1	14	45	1.54
69046307--69046407	18	5.5	18	74	13	98	38	1	14	44	1.57
69046325--69046431	56	1.9	55	84	5	144	40	1	12	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69046307--69046413	9	11.7	9	73	13	85	39	1	14	43	1.57
69046880--69046909	5	6.0	5	100	0	60	80	0	0	20	0.72
69047094--69047231	9	15.3	9	71	18	65	37	1	14	46	1.54
69047131--69047231	18	5.5	18	73	13	89	37	1	14	45	1.57
69047131--69047237	9	11.7	9	71	11	74	38	1	14	44	1.57
69047600--69047624	5	5.0	5	100	0	50	80	0	0	20	0.72
69047696--69047725	5	6.0	5	100	0	60	80	0	0	20	0.72
69047442--69047783	101	3.4	101	88	7	518	55	3	7	33	1.45
69047748--69047935	104	1.9	100	82	13	244	42	4	7	45	1.53
69048403--69048427	5	5.0	5	100	0	50	80	0	0	20	0.72
69047457--69049067	803	2.0	803	99	0	3188	47	6	9	36	1.63
69048499--69048528	5	6.0	5	100	0	60	80	0	0	20	0.72
69048260--69048586	101	3.3	101	87	7	479	56	4	6	32	1.44
69048551--69048738	104	1.9	100	84	11	260	42	4	7	45	1.53
69049400--69049458	8	7.4	8	88	0	73	30	30	1	37	1.68
69049399--69049459	32	1.9	32	93	0	104	32	29	1	36	1.67
69049566--69049595	5	6.0	5	100	0	60	80	0	0	20	0.72
69051270--69051502	127	1.8	127	85	6	330	25	19	14	39	1.90
69052398--69052453	21	2.6	21	80	2	58	35	44	0	19	1.51
69052571--69052609	14	2.8	14	84	0	51	46	30	2	20	1.64
69055203--69055380	48	3.7	48	89	0	257	27	17	25	29	1.98
69055857--69055901	17	2.6	17	89	3	63	53	6	8	31	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69057310--69057389	27	3.0	26	87	5	106	5	5	17	72	1.21
69058391--69058687	73	3.9	73	79	14	337	32	20	15	31	1.94
69058544--69058700	75	2.1	73	88	5	235	33	19	14	33	1.91
69058253--69058700	159	2.8	160	86	4	618	33	19	15	31	1.93
69069429--69069460	15	2.0	17	88	11	50	62	6	0	31	1.20
69069969--69070010	11	3.9	11	75	6	50	66	0	33	0	0.92
69070431--69070477	18	2.4	18	89	10	67	6	0	34	59	1.23
69070435--69070483	17	2.7	18	81	6	64	6	0	40	53	1.26
69070436--69070483	18	2.7	18	80	3	62	6	0	41	52	1.27
69070795--69070975	48	3.8	48	85	2	229	28	18	24	28	1.98
69070795--69070975	96	1.9	96	87	0	263	28	18	24	28	1.98
69076304--69076364	32	1.9	32	96	0	113	44	14	9	31	1.78
69076466--69076516	23	2.2	23	79	6	59	37	1	0	60	1.08
69079757--69079783	5	5.4	5	100	0	54	18	18	40	22	1.91
69080913--69080951	17	2.3	17	81	0	51	76	2	10	10	1.10
69081060--69081121	31	2.0	32	84	9	83	46	12	11	29	1.77
69081679--69081708	6	4.8	6	92	8	51	3	16	0	80	0.85
69081679--69081708	13	2.4	13	94	5	53	3	16	0	80	0.85
69089753--69090198	223	2.0	223	83	3	558	38	12	15	34	1.84
69090891--69090967	25	3.1	25	76	10	86	15	24	22	37	1.93
69090923--69091002	25	3.2	25	77	8	83	21	20	23	35	1.96
69095354--69095396	19	2.2	20	88	8	63	53	4	6	34	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69106297--69106389	25	3.7	25	82	0	105	18	26	19	35	1.95
69106294--69106389	50	1.9	50	84	0	129	17	27	18	36	1.94
69113796--69114820	478	2.1	477	92	1	1714	27	22	15	34	1.95
69118279--69118322	22	2.0	22	100	0	88	22	27	4	45	1.72
69119198--69119234	6	6.0	6	96	3	65	32	18	48	0	1.49
69126368--69126563	43	4.6	43	87	4	272	32	22	14	30	1.94
69132523--69132718	43	4.6	43	87	4	272	33	22	13	30	1.93
69134058--69134108	6	8.5	6	75	16	52	82	3	0	13	0.81
69134084--69134109	10	2.6	10	100	0	52	92	0	0	7	0.39
69134128--69134186	9	6.6	9	86	0	73	25	5	20	49	1.69
69134128--69134187	18	3.3	18	83	0	84	25	5	20	50	1.68
69134128--69134187	27	2.2	27	90	0	93	25	5	20	50	1.68
69137834--69137913	29	2.6	31	78	7	85	30	12	3	53	1.56
69138266--69138301	4	8.8	4	87	6	54	72	0	5	22	1.05
69138266--69138301	17	2.2	16	90	5	54	72	0	5	22	1.05
69138266--69138303	13	3.0	13	88	3	51	71	0	5	23	1.07
69144093--69144368	138	2.0	139	96	2	511	42	14	9	33	1.78
69144796--69144828	17	1.9	17	93	0	57	75	0	0	24	0.80
69145331--69145369	19	2.1	19	90	4	62	25	0	0	74	0.82
69147214--69147305	40	2.3	40	76	0	94	13	27	20	39	1.89
69149541--69149658	59	2.0	59	91	0	191	28	30	20	20	1.97
69162790--69162816	5	5.4	5	100	0	54	18	0	0	81	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69166403--69166440	16	2.5	15	87	8	58	26	15	34	23	1.95
69167226--69167257	5	6.4	5	100	0	64	18	0	0	81	0.70
69172546--69172618	23	3.2	23	65	18	62	46	10	20	21	1.81
69172507--69172618	45	2.5	46	88	4	156	45	9	19	25	1.81
69172634--69172693	27	2.3	26	82	8	77	40	18	16	25	1.91
69181202--69181242	12	3.3	12	86	6	55	0	19	2	78	0.87
69181990--69182045	27	2.1	27	82	0	67	44	7	10	37	1.67
69183165--69183212	19	2.5	19	79	0	51	43	0	2	54	1.12
69183573--69183641	19	3.6	18	77	14	59	43	2	13	40	1.58
69187296--69187379	26	3.2	26	96	0	150	36	25	4	33	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284