genome.fa.s9.2.7.7.80.10.50.1000.222.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  222  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73932170--73932227	19	3.1	19	85	9	66	56	6	0	36	1.26
73939123--73939261	39	3.5	40	91	4	221	23	23	28	25	1.99
73940820--73940858	16	2.4	16	100	0	78	30	25	25	17	1.97
73940780--73940900	58	2.1	58	87	7	176	33	24	19	21	1.97
73947383--73947459	39	2.0	39	97	0	145	28	11	24	35	1.91
73951287--73951471	40	4.7	40	80	7	200	24	22	27	25	2.00
73951287--73951471	79	2.3	81	81	7	218	24	22	27	25	2.00
73951340--73951494	79	2.0	79	82	7	190	26	20	27	25	1.99
73953534--73953754	110	2.0	110	98	0	424	26	17	24	31	1.97
73953899--73953980	41	2.0	41	97	0	155	32	21	18	26	1.97
73959394--73959578	79	2.3	81	84	7	236	24	22	27	25	2.00
73959395--73959578	40	4.6	40	83	9	216	24	22	27	25	2.00
73959447--73959611	79	2.1	79	84	6	210	26	21	27	25	1.99
73962570--73962751	91	2.0	91	100	0	364	30	19	23	26	1.98
73965003--73965047	20	2.2	20	84	7	56	35	22	2	40	1.66
73965243--73965412	43	4.0	43	78	9	184	33	25	17	22	1.96
73970318--73970362	22	2.0	22	100	0	90	28	22	13	35	1.92
73977505--73977628	61	2.0	61	96	0	230	54	17	21	6	1.66
73983254--73983318	16	3.6	18	76	21	64	18	10	23	47	1.79
73983264--73983296	16	2.1	16	100	0	66	18	12	18	51	1.76
73987152--73987209	30	1.9	30	92	0	98	58	5	10	25	1.52
73993132--73993160	14	2.0	15	93	6	51	27	3	20	48	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73993359--73993413	23	2.4	21	72	18	56	50	0	9	40	1.34
73994663--73994712	24	2.1	24	100	0	100	24	12	24	40	1.88
73997499--73997654	3	51.7	3	69	20	76	30	5	0	63	1.21
73997511--73997652	39	3.7	39	78	10	177	29	5	0	64	1.22
73997499--73997662	75	2.2	76	96	3	305	31	4	1	62	1.24
73997586--73997641	19	2.8	21	73	13	55	26	7	0	66	1.18
73997506--73997649	26	5.6	26	71	20	99	29	5	0	63	1.22
74005749--74006155	45	9.1	46	68	14	260	29	14	28	27	1.95
74005754--74006149	90	4.4	90	95	1	652	29	14	28	27	1.96
74005754--74006155	179	2.2	180	91	1	655	29	14	27	27	1.95
74007712--74007765	20	2.7	20	88	5	74	31	7	0	61	1.24
74009475--74009539	28	2.4	27	82	12	80	50	1	0	47	1.10
74009520--74009563	22	2.0	22	90	0	70	40	2	0	56	1.11
74011796--74011823	14	2.0	14	100	0	56	35	0	35	28	1.58
74016607--74016631	10	2.5	10	100	0	50	76	0	16	8	1.02
74020956--74020989	15	2.3	15	94	0	59	41	17	0	41	1.50
74026614--74026722	31	3.5	31	91	1	166	31	23	16	28	1.96
74026835--74026971	25	5.4	25	85	3	193	27	24	22	26	2.00
74026832--74026971	51	2.7	51	98	0	271	27	24	22	26	2.00
74027766--74027853	27	3.3	26	72	12	79	21	18	19	40	1.91
74027861--74028166	27	11.3	27	77	6	197	32	8	19	40	1.81
74027892--74028050	83	1.9	81	87	2	228	33	6	16	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74027861--74028152	80	3.6	81	82	3	336	31	8	18	41	1.80
74027890--74028166	54	5.1	53	78	7	229	31	7	19	41	1.79
74028145--74028248	55	1.9	54	90	2	163	36	6	25	31	1.82
74027946--74028287	27	12.7	27	80	3	206	32	7	21	38	1.81
74028471--74028516	20	2.3	20	96	3	85	10	41	21	26	1.86
74044978--74045015	19	2.0	20	89	5	60	76	2	2	18	1.02
74052128--74052263	38	3.5	38	82	4	148	35	26	16	21	1.95
74055527--74055697	46	3.7	46	96	0	306	29	29	20	20	1.98
74065231--74065262	14	2.3	14	94	0	55	34	18	9	37	1.83
74066089--74066169	29	2.8	29	86	1	101	35	27	19	17	1.94
74071119--74071429	47	6.6	47	89	5	443	27	29	9	34	1.88
74072874--74072993	56	2.1	56	98	0	231	22	23	9	45	1.81
74074260--74074496	40	5.9	40	78	5	214	25	27	22	24	2.00
74074258--74074496	120	2.0	120	80	11	276	25	27	22	24	2.00
74075372--74075886	258	2.0	258	90	2	811	27	23	13	36	1.92
74076228--74076263	16	2.2	16	100	0	72	25	0	36	38	1.56
74076244--74076334	45	2.0	45	85	2	121	27	6	28	37	1.82
74076482--74076536	15	3.4	16	80	16	53	54	1	0	43	1.10
74076488--74076536	16	2.9	18	80	20	61	55	0	0	44	0.99
74076622--74076656	18	2.0	17	88	5	52	54	0	0	45	0.99
74076485--74076897	120	3.4	120	92	2	670	49	5	2	42	1.38
74076742--74076776	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74076862--74076896	18	2.0	17	88	5	52	54	0	0	45	0.99
74079788--74079813	13	2.0	13	100	0	52	61	7	30	0	1.24
74079778--74079856	36	2.2	36	93	0	131	54	13	24	7	1.65
74081792--74081838	22	2.1	22	88	0	67	31	2	12	53	1.51
74086394--74086438	22	2.0	22	86	0	63	31	2	17	48	1.59
74087668--74087722	16	3.5	15	82	9	65	32	25	5	36	1.79
74090039--74090078	9	4.4	9	83	0	53	30	7	15	47	1.72
74105176--74105257	20	3.9	21	77	16	89	57	1	1	40	1.14
74107541--74107597	18	3.0	18	69	14	51	43	22	22	10	1.84
74107498--74107713	39	5.5	39	75	15	203	37	24	24	13	1.91
74107646--74107674	14	2.1	14	100	0	58	37	20	27	13	1.91
74107544--74107766	53	4.0	53	83	10	284	37	23	26	12	1.90
74107699--74107727	14	2.1	14	100	0	58	37	20	27	13	1.91
74107713--74107804	39	2.4	39	96	0	166	38	22	26	13	1.91
74111341--74111436	39	2.5	39	87	0	120	38	22	23	14	1.92
74111360--74111440	39	2.1	39	95	0	144	39	22	25	12	1.89
74113463--74113508	23	2.0	24	95	4	85	36	19	0	43	1.51
74114937--74114994	22	2.6	22	88	0	98	12	41	27	18	1.86
74122791--74122836	22	2.0	23	91	4	76	78	6	4	10	1.08
74123700--74123762	30	2.1	30	96	0	117	42	11	7	38	1.70
74123920--74123974	27	2.0	27	85	0	74	27	29	23	20	1.99
74126847--74126933	29	3.0	29	94	0	147	27	16	31	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74128114--74128227	48	2.4	48	86	5	167	28	19	18	33	1.95
74128136--74128239	48	2.2	48	87	3	147	31	19	16	32	1.94
74133585--74133681	43	2.3	42	84	8	117	26	15	24	32	1.95
74134813--74134844	16	2.0	16	100	0	64	12	25	12	50	1.75
74141295--74141395	53	1.9	53	93	0	175	37	24	5	31	1.80
74141277--74141395	53	2.2	54	87	1	161	37	21	5	36	1.75
74144992--74145164	61	2.9	57	79	10	163	44	1	1	52	1.21
74145024--74145164	61	2.4	57	83	5	165	46	1	1	50	1.19
74146049--74146097	14	3.6	14	83	5	64	69	6	0	24	1.11
74146049--74146084	13	2.6	14	86	8	56	69	2	0	27	1.02
74148300--74148352	26	2.0	26	100	0	106	39	26	7	26	1.83
74151013--74151119	56	1.9	56	96	0	196	42	16	15	25	1.88
74154609--74154670	31	2.0	31	90	0	97	27	9	25	37	1.87
74158670--74158796	42	3.0	42	86	6	170	29	26	14	29	1.95
74158714--74158874	42	3.6	47	81	12	151	29	26	14	29	1.95
74158753--74158878	47	2.7	48	82	9	161	29	26	15	29	1.96
74158904--74159075	31	5.5	31	95	0	281	25	27	19	27	1.99
74159051--74159179	50	2.5	51	90	5	199	25	22	16	35	1.94
74165842--74165903	30	2.1	30	100	0	124	35	9	16	38	1.81
74167007--74167101	42	2.3	41	89	5	145	49	15	5	29	1.67
74167111--74167152	19	2.2	19	95	0	75	50	16	0	33	1.46
74168814--74168864	18	3.1	16	86	13	61	21	1	13	62	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74173907--74173948	22	2.0	21	86	9	59	40	4	0	54	1.21
74173921--74173952	17	1.9	16	93	6	55	40	0	0	59	0.97
74174248--74174291	23	1.9	23	90	0	70	70	0	2	27	0.99
74180027--74180086	9	6.3	9	76	16	59	61	1	0	36	1.06
74180032--74180078	20	2.4	19	89	3	67	59	0	0	40	0.97
74180026--74180087	19	3.3	19	82	12	76	59	1	0	38	1.07
74180056--74180120	26	2.4	27	79	7	78	53	3	0	43	1.16
74180050--74180157	44	2.4	45	77	13	116	49	2	1	46	1.27
74181413--74181452	18	2.1	18	86	9	53	42	2	5	50	1.37
74192598--74192681	27	3.1	27	77	3	98	32	21	14	32	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284