genome.fa.s9.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  124  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41308199--41308418	80	2.8	79	84	6	268	25	23	25	25	2.00
41312437--41312653	46	4.7	44	79	8	193	22	30	19	28	1.98
41312437--41312661	94	2.4	92	82	8	262	22	30	19	27	1.98
41312978--41313035	30	1.9	30	96	0	107	27	22	15	34	1.94
41314492--41314748	107	2.4	109	84	3	331	23	24	28	23	2.00
41316231--41316261	16	1.9	16	93	0	53	48	6	6	38	1.55
41316355--41316425	9	7.2	10	71	13	58	38	1	1	59	1.15
41316355--41316437	20	4.3	18	72	13	67	39	1	1	57	1.14
41316352--41316426	20	3.8	19	76	11	80	38	1	1	58	1.15
41316430--41316484	27	2.0	28	85	3	76	40	0	3	56	1.17
41316404--41316480	18	4.2	18	69	14	52	45	0	2	51	1.14
41316452--41316496	19	2.3	20	88	11	67	40	0	2	57	1.11
41327274--41327321	22	2.2	22	81	7	53	62	8	6	22	1.46
41327291--41327333	22	2.0	22	85	0	59	53	11	4	30	1.57
41330586--41330637	3	17.3	3	91	0	86	67	0	32	0	0.91
41331162--41331987	3	275.3	3	99	0	1643	66	0	33	0	0.92
41332166--41332205	20	2.0	20	85	9	55	40	27	10	22	1.86
41333251--41333310	29	2.2	28	82	14	72	33	0	1	65	1.03
41333884--41334133	41	6.1	41	80	9	226	37	21	21	19	1.94
41333884--41334133	82	3.1	81	84	6	294	37	21	21	19	1.94
41334542--41334595	25	2.2	25	96	0	99	27	7	25	38	1.83
41335135--41335174	21	1.9	21	89	0	62	20	5	30	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41335207--41335238	15	2.1	15	94	0	55	59	0	9	31	1.29
41335210--41335277	24	2.8	23	76	10	64	57	0	4	38	1.19
41340770--41340804	9	3.9	9	85	14	54	45	20	0	34	1.51
41345271--41345406	68	2.0	68	94	0	236	47	9	20	22	1.78
41346616--41346793	43	4.2	43	82	6	202	29	19	20	29	1.97
41346617--41346794	86	2.1	85	85	5	234	29	19	20	29	1.97
41347486--41347527	17	2.5	17	92	0	66	11	28	11	47	1.76
41349635--41349721	11	7.3	11	73	20	52	63	2	3	31	1.23
41349635--41349697	19	3.2	19	75	24	60	65	1	1	31	1.12
41351361--41351447	14	6.1	14	70	15	61	29	11	26	32	1.91
41351397--41351447	7	7.1	7	80	4	57	33	13	23	29	1.93
41354140--41354236	43	2.3	43	81	0	113	27	18	24	28	1.98
41358093--41358266	87	2.0	87	85	2	233	32	14	10	41	1.81
41360500--41360539	18	2.1	20	86	9	57	55	12	2	30	1.50
41363420--41363551	47	2.8	47	87	3	176	31	28	15	25	1.95
41366974--41367057	26	3.3	26	83	8	104	25	22	21	30	1.98
41367107--41367153	20	2.3	21	85	7	62	29	17	12	40	1.86
41376595--41376627	12	2.6	13	85	9	50	9	45	0	45	1.35
41377694--41377758	28	2.3	28	94	0	112	33	27	7	30	1.85
41377874--41377953	27	2.8	28	77	11	92	21	23	22	32	1.98
41377874--41377964	27	3.2	28	76	7	69	21	25	20	31	1.98
41379244--41379289	24	2.0	23	83	12	58	41	15	6	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41382081--41382165	44	1.9	44	90	0	134	32	27	20	20	1.97
41386029--41386126	42	2.3	42	85	5	135	33	24	16	25	1.96
41386005--41386173	43	4.0	42	77	9	144	36	24	14	24	1.93
41391954--41392062	54	2.0	54	85	7	150	40	11	19	29	1.86
41395478--41395610	67	2.0	66	96	0	239	23	27	11	36	1.89
41397854--41397930	29	2.6	29	85	2	100	25	14	29	29	1.95
41397883--41398210	174	1.9	174	90	1	532	29	14	24	32	1.94
41404817--41404847	12	2.6	12	100	0	62	0	0	22	77	0.77
41411849--41411936	43	2.1	42	89	2	131	20	17	32	29	1.95
41418109--41418141	16	2.1	16	94	0	57	45	6	12	36	1.66
41419003--41419122	60	2.0	60	86	3	170	32	14	25	28	1.94
41419341--41419685	175	2.0	175	93	0	591	33	11	22	32	1.89
41424037--41424122	43	2.0	43	86	0	118	22	17	30	30	1.96
41444622--41444652	7	4.4	7	95	0	53	54	0	3	41	1.16
41452857--41452912	24	2.3	24	100	0	112	33	0	35	30	1.58
41452872--41452927	24	2.3	24	87	0	76	41	1	33	23	1.65
41454346--41454457	27	4.1	27	82	7	129	15	23	23	38	1.92
41454346--41454457	54	2.1	54	86	3	154	15	23	23	38	1.92
41456337--41456412	40	1.9	40	86	5	109	21	17	31	30	1.96
41456422--41456491	28	2.5	28	83	0	86	30	8	28	32	1.87
41466006--41466224	40	5.6	40	82	3	248	26	26	22	24	2.00
41470008--41470153	23	6.4	23	76	11	122	38	17	19	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41470098--41470164	24	2.8	24	80	6	75	40	23	19	16	1.91
41478193--41478246	27	2.0	26	82	3	63	29	22	20	27	1.98
41478841--41479326	104	4.7	104	98	1	922	22	24	18	34	1.96
41481006--41481268	40	6.6	40	87	3	316	27	27	20	24	1.99
41489081--41489343	40	6.6	40	87	3	316	26	27	20	25	1.99
41508777--41508815	16	2.5	16	87	4	53	71	2	2	23	1.10
41511320--41511351	15	2.0	17	88	11	50	68	18	6	6	1.32
41516132--41516179	25	1.9	25	95	0	87	25	16	4	54	1.60
41516910--41516943	13	2.6	13	95	0	59	11	11	41	35	1.78
41523023--41523072	2	25.0	2	87	0	73	2	46	0	52	1.12
41529353--41529419	7	9.6	7	78	18	68	32	14	1	50	1.52
41529455--41529488	15	2.3	15	89	0	50	20	8	2	67	1.31
41543708--41544207	27	18.5	27	76	6	241	38	21	8	31	1.83
41543708--41544207	54	9.3	54	76	4	318	38	21	8	31	1.83
41543708--41543992	81	3.5	81	80	5	310	40	21	7	30	1.81
41544208--41544356	27	5.6	27	88	0	210	35	20	20	23	1.96
41544206--41544357	54	2.8	54	90	1	234	36	19	20	23	1.95
41544783--41544847	22	3.0	22	77	8	69	20	21	23	35	1.96
41545006--41545107	27	3.8	27	83	5	125	17	22	22	37	1.94
41545267--41545388	6	19.8	6	70	20	74	21	18	13	46	1.83
41545259--41545368	25	4.2	25	76	19	100	20	19	14	46	1.84
41545276--41545404	31	4.2	31	81	6	147	20	17	13	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41545252--41545373	56	2.2	55	84	8	149	19	18	14	47	1.82
41550302--41550346	23	2.0	23	95	0	81	24	24	22	28	1.99
41577354--41577380	12	2.2	12	100	0	54	51	7	0	40	1.30
41577862--41578039	27	6.6	27	83	3	205	26	15	28	29	1.96
41577863--41578018	82	1.9	81	88	3	233	26	15	28	29	1.96
41577859--41578039	82	2.2	81	83	2	229	27	15	27	29	1.96
41584435--41584464	14	2.1	14	100	0	60	50	6	0	43	1.28
41584946--41585123	27	6.6	27	85	3	207	27	14	28	29	1.95
41584947--41585102	82	1.9	81	88	3	233	27	14	28	29	1.95
41585908--41586215	150	2.1	150	97	0	589	31	13	23	30	1.94
41587654--41587687	12	2.8	12	90	0	50	61	8	11	17	1.54
41599576--41599622	24	2.0	24	86	0	67	29	8	14	46	1.74
41605775--41605853	25	3.2	25	87	0	113	39	16	27	16	1.90
41613627--41613755	38	3.4	38	83	8	163	20	20	25	33	1.97
41613598--41613787	38	4.9	38	81	6	159	20	21	26	32	1.98
41621744--41621887	38	3.8	38	86	5	175	22	20	24	33	1.97
41621735--41621904	76	2.2	78	82	5	211	24	20	24	31	1.98
41624905--41624980	40	1.9	40	83	5	100	32	19	18	28	1.96
41627224--41627373	42	3.5	42	75	14	130	32	26	18	23	1.97
41628929--41628961	17	1.9	17	100	0	66	39	24	18	18	1.92
41635233--41635393	79	2.0	79	95	0	286	28	19	17	34	1.94
41637935--41638022	42	2.1	42	80	4	97	19	31	28	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41640310--41640572	40	6.6	40	87	3	309	26	28	20	23	1.99
41648260--41648522	40	6.6	40	88	3	316	26	27	20	24	1.99
41648454--41648531	40	1.9	41	82	10	97	26	28	21	23	1.99
41651131--41651174	3	15.0	3	86	13	65	65	0	2	31	1.05
41656331--41656445	41	2.8	40	84	5	140	34	12	25	27	1.91
41658567--41658606	21	1.9	20	85	10	53	50	7	2	40	1.44
41660412--41660461	25	2.0	24	92	3	82	44	10	12	34	1.75
41672039--41672382	47	7.3	47	91	2	496	31	9	30	28	1.88
41672139--41672213	22	3.3	22	66	23	64	29	12	32	26	1.92
41679944--41680269	47	7.0	47	98	0	620	30	10	31	27	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284