genome.fa.s9.2.7.7.80.10.50.1000.271.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  271  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90994087--90994283	27	7.3	27	82	4	175	30	9	20	39	1.85
90994105--90994283	81	2.2	81	83	4	209	29	10	21	39	1.86
90994159--90994283	27	4.6	27	89	0	187	30	9	20	39	1.85
91006270--91006433	42	3.9	42	73	12	113	31	23	14	30	1.94
91015136--91015192	17	2.9	19	72	25	55	36	7	8	47	1.62
91028044--91028160	55	2.1	54	81	6	128	23	26	30	18	1.98
91040942--91041092	42	3.5	43	76	12	141	26	21	25	26	2.00
91044276--91044332	19	2.9	19	76	16	62	36	5	8	49	1.57
91047684--91047763	37	2.2	37	84	4	99	28	30	17	23	1.97
91047894--91048144	47	5.4	47	87	2	328	26	32	9	31	1.89
91047894--91048175	141	2.0	140	81	8	326	27	31	9	31	1.88
91053227--91053265	9	4.2	9	84	15	53	64	0	0	35	0.94
91053228--91053264	17	2.1	19	90	10	60	67	0	0	32	0.91
91060476--91060650	49	3.7	47	78	14	166	24	32	18	25	1.97
91062436--91062460	13	1.9	13	100	0	50	32	16	16	36	1.90
91064738--91064816	37	2.1	37	92	0	131	25	18	30	25	1.98
91065825--91065941	47	2.5	46	81	9	114	25	31	16	26	1.96
91065951--91066040	48	1.9	48	84	4	121	25	31	18	24	1.98
91069632--91070014	189	2.0	189	98	0	748	26	25	13	34	1.93
91073167--91073192	12	2.2	12	100	0	52	7	15	30	46	1.74
91073247--91073465	41	5.4	40	87	2	285	35	20	22	21	1.96
91073983--91074026	7	6.3	7	86	0	61	15	0	52	31	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91074184--91074209	7	3.7	7	100	0	52	15	0	38	46	1.46
91074233--91074275	15	3.0	15	80	10	54	20	0	32	46	1.51
91074228--91074270	22	2.0	22	81	9	52	23	0	30	46	1.52
91074878--91074910	7	4.7	7	96	0	57	84	0	0	15	0.61
91076551--91076822	138	2.0	138	91	1	447	27	9	14	48	1.75
91077863--91078092	43	5.4	43	89	2	338	20	21	32	24	1.98
91077863--91078092	85	2.7	86	89	2	338	20	21	32	24	1.98
91080905--91081116	27	7.9	27	82	5	214	36	20	15	27	1.93
91080902--91081116	54	4.0	53	80	3	241	36	20	15	27	1.93
91080918--91081116	81	2.5	82	86	2	269	36	20	15	28	1.93
91081232--91081265	18	1.9	18	88	5	52	14	44	26	14	1.84
91085867--91085908	22	1.9	22	85	0	57	45	4	0	50	1.23
91087941--91087992	9	5.8	9	77	13	54	34	1	0	63	1.06
91087955--91087992	19	1.9	19	94	5	67	36	0	0	63	0.95
91090493--91090754	47	5.6	47	87	0	371	26	31	9	32	1.88
91090493--91090754	94	2.8	94	94	0	443	26	31	9	32	1.88
91090497--91090753	141	1.8	141	91	0	424	26	31	9	31	1.89
91094144--91094272	39	3.4	39	84	6	156	45	20	4	29	1.71
91094208--91094273	22	3.2	22	69	20	70	45	22	3	28	1.67
91117622--91117740	27	4.4	27	84	0	157	35	19	21	24	1.96
91117629--91117740	54	2.1	54	91	0	179	34	20	20	24	1.96
91118460--91118522	32	2.0	32	87	0	90	20	23	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91118374--91118516	72	2.1	67	83	9	171	19	27	21	31	1.97
91125175--91125293	27	4.4	27	82	0	148	36	18	20	24	1.94
91126036--91126095	27	2.3	27	85	2	77	21	23	20	35	1.96
91139490--91139533	22	2.0	22	95	0	79	22	34	9	34	1.86
91161104--91161280	27	6.5	27	83	3	194	27	14	27	30	1.95
91161105--91161260	82	1.9	81	86	3	224	26	14	28	30	1.95
91161101--91161280	82	2.2	81	82	3	218	27	15	27	30	1.96
91162320--91162403	43	2.0	43	92	0	141	29	10	33	26	1.90
91167178--91167289	59	1.9	59	81	3	136	29	11	8	50	1.69
91167075--91168526	475	3.1	468	85	4	1894	33	11	13	41	1.81
91175095--91175156	28	2.2	28	79	0	70	38	12	20	27	1.90
91182051--91182181	44	3.0	43	79	7	124	35	22	16	25	1.95
91186041--91186099	30	2.0	30	86	6	84	37	0	40	22	1.54
91186203--91186264	30	2.0	31	81	3	72	37	0	40	22	1.54
91186362--91186394	9	3.7	9	91	0	57	39	24	12	24	1.89
91186362--91186396	18	1.9	18	100	0	70	37	22	11	28	1.89
91200733--91200880	79	1.9	80	87	4	219	27	20	27	24	1.99
91200750--91200913	79	2.1	79	82	6	199	26	21	27	25	1.99
91200733--91200880	40	3.7	40	88	5	219	27	20	27	24	1.99
91204002--91204084	27	3.1	27	91	0	130	34	22	22	19	1.96
91206849--91207024	40	4.4	40	90	2	257	25	28	22	23	1.99
91214802--91214979	40	4.5	40	89	2	252	25	28	23	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91222954--91223041	27	3.2	27	85	1	113	36	22	20	20	1.95
91224280--91224325	23	1.9	25	82	8	60	60	0	34	4	1.16
91229076--91229248	45	3.9	44	90	3	251	27	27	21	23	1.99
91245038--91245086	17	2.9	17	78	0	53	20	20	22	36	1.95
91255442--91255635	81	2.4	81	77	8	200	39	21	8	30	1.83
91255442--91255608	27	6.2	27	85	4	160	38	21	8	31	1.84
91257236--91257307	27	2.7	27	70	8	65	37	16	23	22	1.94
91257463--91257580	27	4.4	27	80	4	139	24	15	21	38	1.92
91257453--91257581	54	2.4	53	89	2	186	25	14	21	37	1.92
91257453--91257594	27	5.3	27	76	8	112	26	14	21	37	1.92
91257484--91257607	54	2.3	54	85	2	151	27	14	18	39	1.90
91262788--91262879	40	2.3	40	88	0	130	29	23	18	28	1.98
91267087--91267304	40	5.5	40	90	1	332	27	26	23	22	2.00
91268970--91269037	29	2.3	29	85	5	93	27	30	13	27	1.94
91268859--91269186	174	1.9	174	96	0	602	31	24	14	29	1.94
91269146--91269217	29	2.5	30	84	13	105	29	29	13	27	1.95
91271307--91271434	64	2.0	64	98	0	247	25	22	23	28	1.99
91272370--91272514	73	2.0	73	93	0	245	20	33	22	23	1.97
91273686--91274276	295	2.0	295	99	0	1173	35	24	13	26	1.92
91274120--91274519	200	2.0	200	95	0	719	33	25	13	27	1.93
91275854--91275921	29	2.3	29	85	5	93	27	30	13	27	1.94
91275743--91276070	174	1.9	174	96	0	602	30	24	14	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91276030--91276101	29	2.5	30	84	13	105	29	29	13	27	1.95
91284124--91284877	206	3.7	205	88	2	1109	29	21	17	31	1.96
91288756--91288984	40	5.8	40	91	1	311	27	26	22	24	2.00
91288730--91288983	80	3.2	78	86	6	334	26	25	22	25	2.00
91290145--91290249	53	2.0	52	98	0	192	24	31	11	31	1.91
91293047--91293441	196	2.0	196	96	0	727	21	27	16	34	1.95
91300097--91300151	9	6.3	9	74	16	53	63	1	1	32	1.15
91300539--91300623	25	3.4	25	79	6	84	64	1	2	31	1.13
91300544--91300619	11	6.5	11	72	19	55	65	0	2	31	1.06
91309956--91310104	43	3.5	41	73	16	108	27	20	25	26	1.99
91309956--91310069	41	2.7	42	79	12	119	24	21	26	28	1.99
91313277--91313342	20	3.3	20	95	0	114	36	13	21	28	1.91
91313393--91313512	24	5.0	24	91	3	179	27	20	22	30	1.98
91314963--91315006	14	3.0	14	80	6	52	45	0	9	45	1.35
91317690--91317796	28	3.9	27	76	9	101	35	16	25	22	1.95
91318878--91318911	11	2.8	13	91	8	54	76	0	20	2	0.92
91326236--91326586	47	7.5	47	79	9	301	23	28	18	29	1.98
91326277--91326589	46	6.7	46	80	12	279	23	29	18	28	1.98
91326236--91326544	93	3.3	94	86	4	396	23	28	18	29	1.97
91326277--91326587	93	3.3	91	87	5	333	23	28	18	28	1.98
91333852--91334209	46	7.7	46	80	8	318	23	29	18	28	1.98
91333852--91334209	92	3.8	92	83	6	359	23	29	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91336249--91336356	40	2.7	40	95	0	189	21	26	20	31	1.98
91343324--91343383	28	2.1	28	93	6	104	31	6	28	33	1.83
91347084--91347124	18	2.2	19	91	4	66	24	21	0	53	1.46
91347084--91347169	18	4.3	18	73	20	64	22	24	0	53	1.46
91348379--91348403	12	2.1	12	100	0	50	40	8	0	52	1.31
91350872--91350997	44	2.8	45	89	2	182	26	23	15	34	1.95
91352171--91352439	96	2.8	96	81	3	310	27	17	29	24	1.98
91352158--91352440	48	5.9	48	77	8	236	27	17	29	25	1.98
91352158--91352425	144	1.9	144	83	0	347	27	17	29	26	1.97
91354546--91354603	26	2.2	25	80	14	64	37	25	10	25	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284