genome.fa.s9.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  210  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69702745--69702835	19	4.9	19	88	8	143	36	15	10	37	1.83
69702745--69702835	35	2.5	37	89	8	141	36	15	10	37	1.83
69702759--69702814	17	3.5	15	88	9	60	35	16	10	37	1.83
69704086--69704142	30	1.9	30	85	0	78	28	22	21	28	1.99
69704215--69704261	21	2.2	21	96	0	85	38	19	17	25	1.92
69707470--69707515	17	2.7	17	86	0	65	47	10	10	30	1.73
69709000--69709116	30	3.9	30	82	3	130	42	4	23	29	1.73
69709000--69709116	60	2.0	59	83	5	146	42	4	23	29	1.73
69709387--69709589	50	3.8	52	88	7	286	36	18	15	29	1.92
69709387--69709603	54	4.1	55	88	7	322	37	17	16	28	1.91
69709582--69709615	14	2.4	14	95	0	59	58	0	17	23	1.38
69709550--69709767	94	2.4	91	81	8	250	34	20	16	29	1.94
69709731--69710018	85	3.4	85	99	0	567	28	18	15	37	1.92
69709596--69710018	170	2.4	171	86	3	542	30	18	16	33	1.94
69709723--69710230	170	3.3	161	84	12	629	30	20	16	33	1.94
69709940--69710248	140	2.2	142	92	4	509	33	20	16	29	1.94
69709942--69710248	71	4.3	72	83	9	414	34	20	16	28	1.94
69711823--69711860	14	2.6	14	91	8	58	0	18	2	78	0.86
69716070--69716114	17	2.6	17	92	3	72	51	8	11	28	1.68
69716816--69716849	3	11.3	3	100	0	68	67	0	0	32	0.91
69717623--69717738	30	4.0	29	77	4	108	43	0	21	33	1.59
69717620--69717738	59	2.1	57	80	6	132	42	0	21	35	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69725243--69725288	20	2.2	21	92	7	76	36	17	4	41	1.69
69725244--69725284	20	2.0	20	100	0	82	36	19	4	39	1.73
69726085--69726142	26	2.2	26	100	0	116	32	3	25	37	1.73
69738874--69738903	15	2.0	15	93	0	51	23	0	10	66	1.21
69749268--69749306	18	2.2	18	90	4	62	69	0	0	30	0.89
69749758--69749937	10	18.9	10	70	11	76	31	3	3	61	1.31
69749759--69750151	9	41.6	9	67	17	149	33	2	3	60	1.28
69749768--69749829	19	3.2	19	81	4	88	32	0	4	62	1.16
69749757--69749852	39	2.5	39	83	8	133	29	1	4	65	1.18
69749759--69749925	19	8.8	18	70	16	83	32	2	3	61	1.29
69749867--69749999	19	6.8	19	70	19	71	34	0	3	60	1.20
69749920--69749991	22	3.3	22	76	7	67	31	1	5	61	1.28
69750100--69750150	19	2.7	18	81	6	57	27	3	3	64	1.28
69751217--69751256	12	3.3	12	86	10	55	60	5	5	30	1.40
69761371--69761533	43	3.8	44	75	13	162	30	23	18	27	1.98
69761370--69761532	85	1.9	85	83	7	215	30	23	18	27	1.97
69764209--69764422	89	2.4	90	88	2	304	38	21	9	30	1.85
69766670--69766711	6	7.2	6	91	5	59	83	0	14	2	0.75
69771966--69771994	15	2.0	15	93	6	51	34	13	0	51	1.42
69778214--69778278	29	2.3	29	78	7	80	27	1	6	64	1.26
69778252--69778321	25	2.8	24	77	12	79	35	2	4	57	1.33
69778555--69778598	22	2.0	22	95	0	79	52	9	15	22	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69790701--69790731	15	2.0	16	93	6	55	9	12	0	77	0.99
69794570--69794645	31	2.5	31	82	0	89	31	14	11	42	1.82
69813341--69813674	167	2.0	167	97	0	632	16	19	10	54	1.69
69825042--69825074	15	2.1	16	88	5	50	33	0	0	66	0.92
69825071--69825137	30	2.1	32	84	13	86	50	2	0	46	1.16
69825119--69825163	19	2.4	19	80	0	54	51	2	0	46	1.13
69835928--69836174	90	2.7	90	83	3	282	28	23	15	32	1.95
69835971--69836194	90	2.5	90	83	0	304	27	24	16	32	1.96
69843710--69843758	21	2.5	19	84	12	71	42	8	12	36	1.72
69843717--69843759	21	2.0	21	100	0	86	46	9	9	34	1.68
69844534--69844625	31	3.0	31	69	12	82	41	5	13	40	1.67
69844523--69844649	60	2.1	60	83	0	155	37	3	14	43	1.65
69849829--69849900	34	2.1	34	97	0	135	30	26	4	38	1.75
69855313--69855365	19	2.8	19	85	0	61	30	26	24	18	1.98
69856945--69857035	43	2.1	43	85	0	119	26	13	23	37	1.91
69857398--69857431	15	2.3	15	100	0	68	47	5	11	35	1.65
69861162--69861190	5	5.8	5	100	0	58	82	0	0	17	0.66
69867519--69867568	19	2.6	18	82	17	57	42	4	0	54	1.19
69867531--69867608	29	2.7	27	75	14	75	41	3	1	53	1.27
69868038--69868103	18	3.7	18	74	10	64	37	0	3	59	1.13
69868130--69868197	23	2.9	24	76	10	70	33	1	4	60	1.26
69875832--69875917	18	4.7	18	82	1	100	43	11	9	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69875832--69875920	36	2.4	37	81	1	126	41	12	10	35	1.76
69877523--69877571	15	3.0	16	79	11	55	4	14	4	77	1.06
69877669--69877758	31	2.7	31	81	13	92	51	4	0	44	1.21
69881244--69881325	27	3.1	27	77	3	78	26	12	37	23	1.90
69887337--69887421	44	1.9	45	85	2	118	48	10	15	25	1.77
69894172--69894276	45	2.3	45	85	3	140	41	20	17	20	1.90
69894659--69894706	24	2.0	24	95	0	87	50	10	16	22	1.76
69899443--69899496	27	2.0	27	92	0	90	50	9	24	16	1.74
69900685--69900727	21	2.1	21	82	4	52	67	9	13	9	1.42
69903650--69903689	22	1.9	21	85	10	55	40	7	10	42	1.67
69923274--69923465	53	3.9	47	78	9	170	23	16	28	31	1.96
69929776--69929809	9	3.8	9	100	0	68	41	0	11	47	1.40
69930077--69930111	17	2.0	18	88	5	54	37	5	14	42	1.69
69930178--69930239	24	2.6	24	84	0	79	30	11	24	33	1.90
69933486--69933684	52	3.9	52	81	5	194	22	17	29	30	1.96
69933594--69933688	46	2.0	47	83	2	120	23	16	29	30	1.96
69935938--69936072	31	4.4	31	90	0	207	26	20	27	25	1.99
69942071--69942152	28	2.9	29	82	8	89	39	19	29	12	1.88
69946492--69946532	20	2.0	20	100	0	82	31	9	4	53	1.55
69960990--69961070	38	2.1	38	100	0	162	58	9	8	23	1.58
69960992--69961059	22	3.4	22	62	29	60	58	8	7	25	1.54
69976152--69976215	30	2.0	30	85	14	85	43	0	1	54	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69976478--69976557	39	2.1	39	100	0	160	38	5	15	41	1.68
69990553--69990616	32	2.0	32	96	0	119	31	29	9	29	1.88
70001332--70001499	40	4.2	40	83	4	106	25	27	23	23	2.00
70001355--70001499	40	3.6	40	85	4	193	23	26	24	25	2.00
70010300--70010328	14	2.1	14	100	0	58	13	13	27	44	1.82
70012594--70012681	29	3.2	29	65	12	85	30	11	14	43	1.81
70012584--70012694	54	2.1	54	100	0	222	32	12	12	42	1.81
70018676--70018726	24	2.2	24	86	10	70	3	3	13	78	1.03
70020212--70020243	16	2.0	16	100	0	64	31	6	6	56	1.49
70028979--70029017	18	2.2	17	86	13	53	33	0	20	46	1.51
70029243--70029340	23	4.3	23	90	2	162	20	21	26	31	1.98
70029245--70029333	45	2.0	45	95	0	160	19	22	26	31	1.97
70036351--70036389	18	2.2	17	86	13	53	33	0	20	46	1.51
70036615--70036712	23	4.3	23	90	2	162	20	21	26	31	1.98
70036617--70036705	45	2.0	45	95	0	160	19	22	26	31	1.97
70038313--70038409	42	2.3	42	89	0	140	28	15	23	31	1.95
70047034--70047069	13	2.8	13	86	0	54	33	8	19	38	1.82
70047298--70047356	21	2.9	19	82	7	64	54	0	1	44	1.10
70049097--70049408	72	4.3	72	84	5	391	54	15	6	24	1.63
70049127--70049397	145	1.9	145	87	3	404	54	16	5	23	1.62
70049993--70050231	72	3.3	72	92	2	385	55	15	5	23	1.61
70050659--70050706	18	2.7	18	93	0	78	39	14	12	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70050996--70051177	73	2.5	71	83	2	213	51	13	6	29	1.65
70053339--70053366	5	5.6	5	100	0	56	60	0	21	17	1.36
70053465--70053505	9	4.6	9	84	0	55	51	7	2	39	1.43
70053597--70053637	12	3.5	12	75	18	50	56	4	0	39	1.21
70053777--70053878	52	2.0	52	88	0	150	32	5	7	53	1.54
70054474--70054632	2	79.5	2	100	0	318	0	49	0	50	1.00
70069870--70069897	5	5.6	5	100	0	56	60	0	21	17	1.36
70069996--70070036	9	4.6	9	84	0	55	51	7	2	39	1.43
70070128--70070168	12	3.5	12	75	18	50	56	4	0	39	1.21
70070308--70070409	52	2.0	52	88	0	150	32	5	7	53	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284