genome.fa.s9.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  205  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68386930--68387002	33	2.2	32	95	2	128	30	21	8	39	1.83
68391168--68391229	23	2.9	22	77	13	58	51	4	3	40	1.39
68392184--68392326	68	2.1	68	97	1	268	16	11	21	50	1.77
68393398--68393427	14	2.1	14	100	0	60	60	6	13	20	1.55
68393537--68393803	73	3.7	71	83	10	298	34	20	15	28	1.94
68393499--68393906	155	2.7	147	78	11	393	37	19	15	26	1.92
68393748--68394054	88	3.5	88	86	5	415	38	20	15	25	1.92
68406283--68406340	24	2.5	22	78	13	64	65	5	3	25	1.29
68406499--68406631	3	43.0	3	69	23	57	60	3	2	33	1.27
68406532--68406595	19	3.4	19	81	16	71	57	6	0	35	1.24
68406499--68406607	8	13.1	8	70	25	68	60	4	0	33	1.23
68407238--68407288	12	4.3	12	75	2	50	25	1	3	68	1.17
68409421--68409471	20	2.4	21	87	9	68	76	1	3	17	1.03
68409422--68409467	16	3.1	15	87	6	58	78	2	4	15	1.01
68409586--68409624	17	2.4	17	87	12	55	69	2	5	23	1.21
68410486--68410804	47	6.7	47	95	0	548	29	30	8	31	1.87
68414396--68414442	23	2.0	24	83	4	60	36	2	4	57	1.30
68419410--68419462	25	2.1	25	82	0	61	26	5	3	64	1.33
68419477--68419615	49	2.9	45	76	17	102	29	5	5	59	1.42
68419510--68419614	22	4.5	22	69	15	68	30	5	3	60	1.38
68419539--68419645	49	2.2	49	83	6	128	30	4	6	57	1.44
68419630--68419666	17	2.2	17	95	0	65	29	0	8	62	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68422767--68422801	3	11.7	3	100	0	70	68	0	0	31	0.90
68423684--68423734	25	2.0	25	100	0	102	31	37	15	15	1.89
68431335--68431463	68	1.9	68	96	0	240	34	16	11	37	1.85
68438551--68438690	44	3.2	44	81	2	174	35	20	15	27	1.93
68442089--68442123	18	2.0	18	88	5	54	68	0	0	31	0.90
68442406--68442484	35	2.2	37	86	13	121	35	16	10	37	1.82
68442427--68442482	17	3.5	15	88	9	60	35	16	10	37	1.83
68442413--68442484	19	3.9	19	89	10	123	36	15	11	37	1.83
68442834--68443107	45	6.1	45	78	6	277	25	27	15	31	1.96
68442834--68443017	89	2.1	90	90	1	289	24	29	15	30	1.95
68443047--68443298	78	3.2	78	90	2	407	24	24	19	31	1.98
68443269--68443319	21	2.4	21	96	0	93	23	19	27	29	1.98
68442958--68443684	386	1.9	389	88	2	1120	25	23	18	32	1.97
68443444--68443779	78	4.3	78	98	0	627	23	24	19	32	1.97
68443631--68444504	220	4.2	202	83	8	877	26	22	18	33	1.96
68443832--68444004	78	2.2	78	90	2	267	26	23	19	31	1.98
68443946--68444535	220	2.7	220	91	1	923	26	21	18	32	1.97
68443747--68444535	440	1.8	416	83	7	981	26	22	18	33	1.97
68446649--68448451	901	2.0	901	98	0	3498	26	24	16	31	1.96
68447953--68449733	891	2.0	890	97	0	3355	26	25	16	31	1.97
68456605--68456639	17	2.1	17	89	10	54	71	0	0	28	0.86
68456605--68456638	18	1.9	17	88	5	50	73	0	0	26	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68456904--68456951	22	2.2	21	78	10	51	39	18	2	39	1.63
68456930--68456966	19	1.9	19	94	0	65	37	16	8	37	1.78
68456936--68456974	19	2.2	19	86	9	55	35	12	12	38	1.82
68457947--68458050	26	3.9	26	73	18	74	46	0	2	50	1.23
68457959--68458026	28	2.4	29	83	11	88	48	0	1	50	1.10
68457959--68458037	18	4.2	18	71	21	56	48	0	2	49	1.14
68458041--68458117	30	2.7	27	81	15	84	37	0	3	58	1.17
68458089--68458157	11	6.3	11	74	12	61	40	0	1	57	1.07
68458090--68458129	21	1.9	21	90	10	64	37	0	2	60	1.11
68458119--68458165	25	1.9	25	86	4	69	40	0	0	59	0.97
68457940--68458211	134	2.0	141	80	11	323	41	1	3	53	1.28
68458205--68458234	11	2.6	12	94	5	53	36	0	0	63	0.95
68458232--68458281	12	3.7	13	76	23	50	48	0	0	52	1.00
68458217--68458327	21	5.0	21	67	23	57	46	1	0	50	1.18
68459179--68459248	17	4.0	16	78	10	68	44	1	1	52	1.18
68459179--68459249	36	1.9	37	85	2	99	45	1	1	52	1.18
68459299--68459414	17	6.6	17	68	16	58	39	3	1	55	1.27
68459274--68459343	17	4.1	17	70	14	54	38	2	1	57	1.23
68459269--68459414	71	2.1	71	93	0	247	41	2	2	53	1.27
68459325--68459365	20	2.0	20	85	0	55	53	0	0	46	1.00
68460026--68460069	19	2.2	20	92	4	72	47	6	0	45	1.29
68460026--68460080	19	2.8	20	78	13	62	40	5	0	54	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68460168--68460213	24	1.9	24	86	0	65	63	4	0	32	1.14
68460245--68460315	20	3.5	20	78	21	69	54	0	0	45	0.99
68460247--68460315	22	3.3	21	84	11	88	53	0	0	46	1.00
68460260--68460322	20	3.0	21	80	19	78	57	1	0	41	1.08
68460317--68460389	23	3.2	23	80	7	85	52	2	0	45	1.15
68461559--68461601	20	2.1	21	86	4	61	23	0	11	65	1.25
68464313--68464689	132	2.9	131	82	3	391	34	18	19	28	1.95
68469775--68469807	17	1.9	17	88	11	50	78	6	15	0	0.93
68469833--68469878	23	2.1	21	88	8	65	76	2	2	19	1.00
68469842--68469886	17	2.6	18	85	7	65	73	0	6	20	1.05
68471781--68471805	12	2.1	12	100	0	50	68	0	32	0	0.90
68472440--68472499	30	2.0	29	90	3	93	25	10	15	50	1.74
68473055--68473098	21	2.1	21	83	8	54	29	20	15	34	1.94
68474840--68474911	19	3.7	19	76	10	67	33	6	0	59	1.24
68474862--68474969	47	2.3	46	76	19	107	32	3	1	62	1.24
68474954--68475007	28	2.0	28	85	3	74	27	5	3	62	1.34
68475028--68475066	20	2.0	20	84	0	51	35	2	2	58	1.25
68475030--68475080	26	2.0	24	81	7	57	37	3	1	56	1.29
68475092--68475146	19	3.0	19	72	22	55	30	3	1	63	1.22
68479853--68479912	30	2.0	29	90	3	93	23	11	15	50	1.76
68480464--68480507	21	2.1	21	83	8	54	29	20	15	34	1.94
68485180--68485233	27	2.0	28	82	10	67	59	1	5	33	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68485196--68485291	19	4.8	20	73	19	67	59	5	3	32	1.35
68485794--68485852	17	3.7	17	70	25	65	3	3	22	71	1.16
68485792--68485848	30	1.9	30	100	0	114	3	3	17	75	1.09
68486717--68486975	72	3.5	72	86	5	358	32	21	16	30	1.95
68497873--68497949	22	3.3	22	79	13	91	3	1	27	67	1.16
68500046--68500102	22	2.6	22	78	8	64	31	0	1	66	1.02
68500046--68500109	23	2.8	22	77	15	60	32	0	1	65	1.02
68500498--68500612	60	1.9	60	89	3	178	33	0	12	53	1.44
68505176--68505229	19	2.7	20	73	23	51	74	7	5	12	1.21
68505499--68505558	28	2.1	28	93	0	102	36	5	18	40	1.72
68505507--68505564	28	2.1	28	93	0	98	29	6	20	43	1.78
68505879--68506004	67	1.9	63	84	6	162	43	17	10	28	1.82
68508337--68508397	28	2.2	28	100	0	122	6	22	22	47	1.74
68510045--68510081	19	1.9	19	94	0	65	48	2	10	37	1.52
68510425--68510464	20	2.0	21	90	5	64	67	0	0	32	0.91
68511247--68511271	7	3.6	7	100	0	50	0	12	0	88	0.53
68514272--68514309	19	2.0	19	89	0	58	76	2	21	0	0.91
68537368--68537400	11	3.0	11	95	0	57	33	0	0	66	0.92
68537536--68537566	5	6.2	5	100	0	62	38	0	0	61	0.96
68538405--68538464	18	3.3	19	68	27	58	35	0	15	50	1.44
68543435--68543472	19	2.0	20	85	15	53	39	23	0	36	1.55
68543702--68543872	93	1.8	93	93	0	297	28	28	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68543697--68543869	46	3.7	46	79	10	208	29	27	20	21	1.98
68554754--68555021	127	2.1	124	87	3	385	29	14	17	38	1.89
68555095--68555169	35	2.2	34	90	2	114	44	29	1	25	1.63
68557466--68557567	46	2.2	47	82	7	118	21	17	34	26	1.96
68558553--68558740	94	2.0	94	94	0	331	37	19	19	23	1.94
68560625--68560685	26	2.3	26	91	0	104	42	22	18	16	1.89
68560611--68560689	26	3.0	26	81	7	90	41	21	18	17	1.90
68593907--68594075	39	4.3	39	87	1	223	22	24	20	32	1.98
68593907--68594075	78	2.2	77	90	2	257	22	24	20	32	1.98
68612981--68613040	6	10.3	6	75	13	63	15	1	3	80	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284