Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: At_chr10 Parameters: 2 7 7 80 10 50 1000 Length: 95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  162  of  284  ( 34012 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54373369--54373410
16
2.6
16
80
0
57
42
16
23
16
1.88
54373637--54373736
29
3.5
29
78
6
105
25
17
31
27
1.97
54377284--54377335
27
2.0
26
84
3
68
17
26
21
34
1.95
54384384--54384604
46
4.7
49
78
10
214
23
31
18
27
1.97
54397774--54397852
30
2.6
31
80
11
92
11
17
15
55
1.68
54397783--54397862
15
5.4
15
77
7
83
10
17
13
58
1.62
54402955--54403189
50
4.7
50
81
4
260
30
24
18
26
1.98
54402942--54403234
101
2.9
99
76
4
293
31
24
17
26
1.97
54405768--54405963
101
2.0
99
86
2
275
29
27
18
25
1.98
54415913--54415951
21
1.9
19
85
10
51
28
15
5
51
1.64
54418426--54418572
39
3.8
39
90
1
215
45
9
8
36
1.67
54418415--54418572
79
2.0
77
87
4
228
46
9
8
36
1.66
54420589--54420658
27
2.6
27
95
2
113
31
28
12
27
1.93
54420589--54420686
28
3.5
28
90
2
135
31
28
13
26
1.94
54430460--54430488
14
2.1
14
100
0
58
44
6
0
48
1.29
54433946--54434127
40
4.6
40
81
6
201
24
19
28
27
1.99
54433977--54434160
79
2.3
77
77
10
183
26
19
26
27
1.99
54447773--54448223
54
8.4
54
74
6
353
38
21
8
32
1.84
54447773--54448305
27
19.7
27
81
4
307
37
21
10
30
1.86
54447773--54448277
54
9.4
53
74
7
342
38
21
9
31
1.86
54447773--54448307
81
6.6
81
75
7
342
37
20
10
30
1.86
54448152--54448328
81
2.2
81
84
4
223
36
21
16
25
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54448152--54448347
54
3.6
54
84
3
200
36
19
17
26
1.94
54448770--54448834
22
3.0
22
80
8
78
20
24
20
35
1.96
54448994--54449087
27
3.5
27
86
5
127
20
24
20
35
1.96
54449247--54449343
6
15.8
6
70
16
65
20
17
14
47
1.82
54449237--54449359
31
4.0
31
80
3
133
21
17
13
48
1.80
54451000--54451098
42
2.3
42
82
5
119
31
23
19
26
1.98
54450989--54451145
43
3.7
41
78
8
136
31
24
20
24
1.98
54454006--54454796
63
12.6
63
100
0
1582
35
20
19
25
1.96
54458951--54458984
17
2.0
17
100
0
68
52
5
23
17
1.66
54466753--54466866
43
2.7
42
82
6
131
30
23
19
26
1.98
54468006--54468040
13
2.7
13
100
0
70
40
14
5
40
1.69
54485019--54485182
43
3.8
43
79
7
129
34
26
15
23
1.95
54486119--54486294
45
4.0
45
84
2
214
26
25
22
25
2.00
54486118--54486285
90
1.9
88
87
4
248
25
26
22
26
2.00
54490054--54490095
21
2.0
20
86
4
57
50
23
2
23
1.61
54493650--54493674
13
1.9
13
100
0
50
8
40
20
32
1.81
54507353--54507395
20
2.2
20
100
0
86
16
30
13
39
1.87
54509225--54509449
48
4.7
48
85
0
288
25
19
26
28
1.98
54511339--54511382
20
2.3
18
84
7
52
20
31
34
13
1.92
54513338--54513508
93
1.8
93
96
0
315
28
29
21
21
1.98
54513330--54513505
46
3.8
46
80
12
225
28
28
21
21
1.98
54514292--54514395
52
2.0
52
98
0
199
43
17
19
20
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54519873--54519971
50
2.0
50
91
0
162
25
14
16
44
1.85
54526158--54526248
45
2.0
45
80
4
103
26
17
26
29
1.98
54530004--54530430
49
8.8
49
95
1
732
33
10
30
25
1.90
54530484--54530562
37
2.1
37
90
0
122
26
18
29
25
1.98
54532370--54533690
40
33.0
40
97
0
2381
22
23
29
23
1.99
54536656--54536727
35
2.1
35
100
0
144
38
8
11
41
1.71
54537731--54537773
22
2.0
22
90
0
68
11
20
25
41
1.86
54537845--54538090
43
5.7
43
86
0
287
25
29
18
26
1.98
54537845--54538066
85
2.6
86
85
2
286
26
29
18
26
1.98
54542648--54542688
21
2.0
21
90
0
64
31
41
0
26
1.56
54542645--54542723
35
2.3
34
80
10
88
37
34
0
27
1.57
54542886--54542939
22
2.3
24
84
9
76
62
0
0
37
0.95
54542969--54543031
22
2.9
22
76
9
58
38
44
0
17
1.49
54543020--54543100
21
3.8
20
75
14
74
41
33
0
24
1.55
54543047--54543084
14
2.7
15
84
12
53
42
28
0
28
1.56
54543026--54543100
22
3.5
22
76
8
84
42
30
0
26
1.56
54543044--54543093
15
3.5
15
81
8
59
42
32
0
26
1.56
54543317--54543432
41
2.8
41
90
2
180
28
30
20
20
1.98
54543468--54543546
39
2.0
39
90
2
122
24
20
16
39
1.92
54543468--54543605
40
3.5
40
74
5
127
21
21
18
38
1.94
54547427--54547501
37
2.0
37
100
0
150
29
13
10
46
1.76
54550814--54550932
23
5.1
23
97
1
220
30
21
21
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54550983--54551049
20
3.3
20
93
0
116
32
20
11
34
1.90
54550983--54551038
11
5.5
11
71
16
57
32
19
12
35
1.89
54551086--54551133
25
1.9
25
86
0
69
25
16
25
33
1.96
54557034--54557309
48
5.8
48
83
5
326
25
18
30
26
1.98
54561166--54561203
17
2.2
18
85
4
51
7
21
0
71
1.11
54563616--54563654
19
2.1
19
85
4
53
28
5
2
64
1.28
54564562--54564601
18
2.2
19
90
4
64
55
12
0
32
1.38
54567337--54567408
20
3.7
20
87
7
94
40
0
5
54
1.24
54568438--54568477
21
1.9
20
85
10
53
27
5
10
57
1.52
54572298--54572332
18
1.9
18
94
0
61
28
28
2
40
1.71
54572590--54572630
21
2.0
22
90
9
68
31
48
17
2
1.60
54595999--54596051
26
2.0
26
100
0
106
47
18
11
22
1.81
54608781--54608942
38
4.0
38
78
14
171
29
15
25
29
1.96
54610581--54610623
20
2.2
20
100
0
86
13
0
53
32
1.41
54615734--54615880
56
2.6
58
74
8
140
31
21
15
30
1.95
54620971--54621173
40
5.1
40
87
3
277
25
28
23
23
1.99
54624966--54625065
50
2.0
50
100
0
200
28
24
12
36
1.91
54629235--54629425
40
4.8
40
85
3
242
26
28
21
23
1.99
54633984--54634161
89
2.0
89
95
0
320
26
25
17
29
1.98
54636842--54637032
40
4.8
40
85
3
242
26
28
21
23
1.99
54639532--54639795
132
2.0
132
96
0
492
31
23
17
26
1.97
54644490--54644680
40
4.8
40
85
3
242
26
28
21
23
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54646027--54646193
83
2.0
83
98
1
327
24
20
20
34
1.96
54651549--54651609
30
2.0
30
83
0
77
31
22
8
37
1.84
54656525--54656559
18
1.9
18
100
0
70
45
17
20
17
1.85
54656716--54656766
22
2.3
22
89
0
75
31
21
23
23
1.98
54656725--54656772
22
2.2
22
84
0
60
27
22
27
22
1.99
54656912--54657091
54
3.3
54
88
0
252
41
18
13
26
1.88
54656905--54657091
81
2.3
81
83
5
227
41
18
13
26
1.88
54656906--54657091
27
6.9
26
80
6
176
40
18
13
26
1.88
54672077--54672253
54
3.3
54
85
3
248
41
17
12
28
1.86
54672098--54672253
81
1.9
81
92
0
258
40
16
14
28
1.88
54672077--54672253
27
6.6
26
81
5
201
41
17
12
28
1.86
54677967--54678008
21
2.0
21
95
0
75
21
38
26
14
1.91
54680646--54680709
25
2.6
25
76
11
69
34
1
1
62
1.14
54684992--54685038
19
2.5
19
86
6
60
27
19
8
44
1.79
54690050--54690074
13
1.9
13
100
0
50
80
8
0
12
0.92
54690052--54690114
24
2.6
25
80
7
67
77
11
1
9
1.05
54690048--54690128
30
2.8
28
80
16
85
79
9
1
9
1.01
54691203--54691331
64
2.0
64
88
5
190
34
17
11
35
1.87
54693113--54693310
40
5.0
39
84
7
247
27
26
22
23
1.99
54693130--54693311
79
2.3
80
86
4
253
27
27
21
23
1.99
54702886--54703047
46
3.5
47
80
7
154
27
19
30
22
1.98
54702888--54703047
47
3.4
47
79
9
143
27
19
30
22
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54703077--54703218
71
2.0
71
90
0
221
28
12
24
33
1.92
54704250--54704304
22
2.5
22
93
0
92
10
41
27
20
1.85
54710566--54710682
46
2.5
46
83
6
139
29
18
29
22
1.97
54710606--54710727
47
2.6
47
79
8
133
27
16
30
25
1.97
54717304--54717338
16
2.1
17
89
5
54
54
5
20
20
1.64
54718837--54718960
35
3.5
35
78
4
126
23
23
13
39
1.90
54719084--54719137
28
1.9
28
100
0
108
29
18
11
40
1.85
54720355--54720379
6
4.2
6
100
0
50
16
0
0
84
0.63
54724198--54724234
17
2.2
17
90
9
58
43
0
32
24
1.55
54724367--54724481
34
3.4
34
78
7
119
18
11
24
46
1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284