genome.fa.s9.2.7.7.80.10.50.1000.223.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  223  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74194248--74194331	27	3.1	27	77	3	98	32	21	14	32	1.93
74194306--74194378	27	2.7	27	73	0	74	32	20	9	36	1.85
74199336--74199399	32	2.0	32	96	0	119	35	4	18	40	1.72
74205194--74205233	20	2.0	20	85	0	53	2	25	17	55	1.55
74205182--74205235	15	3.6	15	78	9	56	3	20	16	59	1.52
74206552--74206591	20	2.0	20	85	0	53	2	25	17	55	1.55
74206540--74206593	15	3.6	15	78	9	56	3	20	16	59	1.52
74210659--74210693	2	17.5	2	87	0	52	42	5	0	51	1.25
74216148--74216205	21	2.8	20	76	7	53	22	1	1	74	1.01
74222984--74223008	6	4.2	6	100	0	50	48	20	16	16	1.82
74222992--74223102	45	2.5	45	83	0	132	44	14	18	23	1.86
74223056--74223226	45	3.6	49	79	13	189	44	18	16	20	1.87
74223088--74223237	45	3.3	45	88	0	228	42	18	18	20	1.89
74226342--74226366	8	3.1	8	100	0	50	76	0	0	24	0.80
74226339--74226411	29	2.5	31	78	13	82	60	4	0	35	1.16
74226346--74226417	31	2.4	30	73	22	71	61	2	0	36	1.11
74226775--74226801	14	1.9	14	100	0	54	18	29	0	51	1.46
74232193--74232218	13	2.0	13	100	0	52	38	7	0	53	1.30
74234667--74234737	31	2.3	31	83	11	85	26	9	19	43	1.82
74241295--74241331	19	1.9	19	94	0	65	27	21	18	32	1.97
74250618--74250787	46	3.6	47	77	6	130	24	28	20	25	1.99
74250668--74250801	46	2.8	48	80	6	166	26	29	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74253356--74253395	20	2.0	20	85	5	53	60	12	0	27	1.33
74258832--74258878	6	7.5	6	86	9	67	21	0	0	78	0.75
74266412--74266460	20	2.5	20	89	0	71	18	4	2	75	1.06
74267746--74267777	14	2.3	14	94	0	55	87	3	0	9	0.64
74276154--74276220	23	2.8	23	84	8	73	16	23	20	38	1.92
74276154--74276260	25	4.4	24	77	9	83	19	21	19	39	1.93
74276179--74276282	25	4.2	25	72	17	83	20	23	20	36	1.95
74276179--74276276	50	2.0	50	85	4	135	21	23	19	35	1.96
74276264--74276319	24	2.3	24	78	6	60	21	25	17	35	1.95
74281743--74281807	29	2.3	28	81	7	69	32	1	4	61	1.26
74281977--74282011	12	2.9	12	95	0	61	25	2	5	65	1.28
74287377--74287567	53	3.6	51	81	8	220	41	0	30	27	1.56
74288272--74288332	23	2.7	23	85	7	81	29	4	3	62	1.32
74291572--74291744	46	3.8	45	85	4	204	39	13	25	21	1.90
74291579--74291767	91	2.1	89	80	7	202	40	14	23	21	1.90
74301391--74301430	14	2.9	14	84	0	53	32	7	17	42	1.77
74301414--74301453	20	2.0	20	90	0	62	27	10	12	50	1.72
74301399--74301465	34	1.9	35	87	3	100	32	8	11	46	1.72
74306243--74306279	11	3.3	11	88	3	56	10	10	8	70	1.35
74312667--74313300	7	90.6	7	100	0	1268	28	0	14	57	1.38
74317166--74317224	30	1.9	31	89	3	93	28	20	1	49	1.59
74317166--74317234	30	2.3	31	85	7	88	28	18	4	47	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74318303--74318357	24	2.3	24	100	0	110	52	16	10	20	1.73
74323125--74323175	26	2.0	25	96	0	84	33	19	29	15	1.93
74324461--74324656	75	2.6	75	89	4	308	35	15	16	31	1.91
74327340--74327392	23	2.4	22	80	3	61	20	1	9	67	1.28
74330631--74330699	9	7.4	9	72	18	52	31	0	0	68	0.90
74349970--74350014	21	2.1	21	95	0	81	42	13	0	44	1.43
74352290--74352617	3	111.7	3	67	12	101	60	3	7	29	1.39
74352393--74352615	20	10.8	20	68	22	83	59	3	6	30	1.38
74352370--74352475	22	4.8	22	73	15	76	60	0	6	33	1.23
74352538--74352575	10	3.9	10	83	16	53	60	0	2	36	1.11
74353932--74353975	23	1.9	23	90	0	70	61	4	2	31	1.28
74353936--74353978	11	3.8	11	80	17	52	65	2	2	30	1.18
74355130--74355181	18	2.7	19	85	5	61	61	3	1	32	1.25
74355628--74355732	31	3.4	30	75	7	104	40	2	3	52	1.34
74355618--74355735	61	1.9	61	92	0	200	43	2	3	50	1.32
74355804--74355837	12	2.8	12	100	0	68	32	23	0	44	1.54
74358055--74358282	117	1.9	117	96	0	420	35	16	9	38	1.81
74359120--74359159	20	2.0	20	95	0	71	15	17	27	40	1.89
74363261--74363308	21	2.3	20	82	7	51	22	0	6	70	1.09
74366345--74366378	14	2.4	14	86	13	52	55	0	5	38	1.24
74372379--74372425	23	2.0	23	87	0	67	36	10	14	38	1.81
74374546--74374588	20	2.2	20	87	8	61	37	0	6	55	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74379273--74379314	22	2.0	21	85	4	57	35	0	0	64	0.94
74381740--74381769	15	2.0	15	100	0	60	60	13	6	20	1.55
74393612--74393918	154	2.0	154	99	0	605	33	12	26	27	1.92
74393967--74394076	54	2.0	54	96	3	204	33	18	11	36	1.87
74397549--74397827	139	2.0	139	100	0	558	31	15	12	41	1.83
74401423--74401462	14	2.8	14	80	3	53	0	40	0	60	0.97
74401762--74401836	6	12.3	6	76	18	59	13	6	2	77	1.07
74401762--74401837	12	6.4	11	79	13	71	14	6	2	76	1.10
74406365--74406510	51	2.9	49	83	4	184	28	25	20	26	1.99
74414144--74414206	22	2.8	23	85	4	101	34	20	15	28	1.94
74414494--74414770	50	5.5	50	96	0	500	35	16	22	25	1.94
74414746--74414832	31	2.8	31	92	0	147	25	19	28	26	1.99
74414939--74415063	49	2.7	48	86	9	172	28	15	27	28	1.96
74414951--74415114	42	3.7	43	83	9	172	29	15	26	28	1.96
74432300--74432354	27	2.0	27	100	0	110	32	18	7	41	1.78
74438613--74438680	23	3.1	23	79	10	63	64	0	0	35	0.94
74440531--74440570	20	2.0	20	95	0	71	50	2	0	47	1.14
74440533--74440577	20	2.2	20	88	0	63	60	2	0	37	1.09
74441631--74441655	7	3.6	7	100	0	50	40	0	12	48	1.40
74442428--74442466	13	3.1	13	79	20	55	64	0	0	35	0.94
74442419--74442476	25	2.3	25	88	5	82	60	1	1	36	1.17
74443966--74444003	20	1.9	20	84	10	51	36	10	15	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74449056--74449126	36	2.0	36	91	2	117	36	11	1	50	1.47
74450928--74450971	22	2.0	22	86	0	61	52	0	0	47	1.00
74453681--74453737	15	3.5	15	71	17	51	49	1	1	47	1.22
74456941--74456976	18	2.0	18	94	0	63	25	27	8	38	1.84
74456942--74456983	18	2.3	18	87	0	57	23	28	4	42	1.74
74458212--74458313	33	3.1	33	83	8	118	46	13	0	40	1.44
74458217--74458305	33	2.6	34	91	3	144	43	13	0	42	1.44
74461739--74461795	16	3.6	16	92	0	78	31	0	35	33	1.58
74462041--74462075	18	2.0	17	88	5	52	54	0	0	45	0.99
74464679--74464712	14	2.3	15	90	5	52	44	17	5	32	1.73
74465602--74465646	22	2.0	22	95	0	81	17	20	17	44	1.87
74472201--74472274	34	2.2	34	87	4	105	58	1	28	12	1.42
74473134--74473159	12	2.2	12	100	0	52	34	7	23	34	1.83
74477553--74477603	25	2.0	25	100	0	102	13	31	19	35	1.91
74479028--74479102	34	2.3	34	84	13	95	58	0	26	14	1.37
74481048--74481080	17	1.9	17	93	0	57	39	3	0	57	1.14
74481979--74482038	28	2.2	26	88	5	84	58	0	0	41	0.98
74485664--74485701	12	3.2	12	88	0	58	42	36	21	0	1.53
74486425--74486481	3	19.0	3	87	0	51	40	33	22	3	1.71
74486426--74486484	15	3.9	15	84	0	64	42	33	20	3	1.69
74487938--74488005	9	7.4	9	76	12	50	75	1	20	2	1.02
74487938--74488007	12	5.5	12	75	11	68	75	1	20	2	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74496946--74497009	20	3.3	18	72	12	56	60	0	0	39	0.97
74496959--74497009	20	2.6	19	81	6	57	64	0	0	35	0.94
74501830--74502178	115	3.0	116	95	2	621	36	21	17	24	1.94
74504767--74504819	11	4.9	11	74	4	54	43	16	0	39	1.49
74504954--74505064	47	2.3	48	85	10	156	37	8	4	49	1.53
74504954--74505087	48	2.8	47	83	9	164	33	8	6	51	1.58
74506064--74506089	7	3.7	7	100	0	52	26	0	15	57	1.38
74506677--74506718	18	2.3	18	91	0	66	21	28	7	42	1.79
74512184--74512629	126	3.5	125	91	1	694	28	18	17	35	1.94
74512833--74512877	8	6.0	8	85	15	60	46	37	0	15	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284