genome.fa.s9.2.7.7.80.10.50.1000.280.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  280  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94320525--94320644	54	2.2	54	76	2	125	22	26	29	21	1.99
94321792--94321945	27	5.7	27	75	11	100	59	5	12	23	1.53
94321838--94321942	28	3.9	28	81	8	119	57	5	13	23	1.58
94321786--94321945	55	2.9	55	79	9	132	60	5	11	23	1.51
94325599--94325768	45	3.8	44	86	4	225	44	15	18	21	1.86
94325599--94325768	89	1.9	90	86	3	245	44	15	18	21	1.86
94325599--94325791	45	4.3	45	81	9	198	45	15	17	21	1.85
94328253--94328322	25	2.8	25	93	0	113	24	22	25	27	2.00
94328525--94328741	27	8.0	27	88	0	290	24	21	18	35	1.95
94328760--94329639	27	32.6	27	98	0	1652	26	10	24	37	1.89
94330743--94330854	27	4.2	26	88	5	143	35	23	24	16	1.95
94330743--94330854	54	2.1	54	88	3	163	35	23	24	16	1.95
94334785--94334867	29	2.8	30	84	14	109	26	25	20	27	1.99
94335081--94335132	25	2.1	25	89	3	79	28	19	19	32	1.96
94335088--94335157	25	2.8	25	89	4	97	27	22	22	27	1.99
94335359--94335602	27	9.0	27	84	0	308	25	20	19	34	1.96
94335590--94335745	80	2.0	80	83	7	201	30	10	20	39	1.86
94335621--94335745	53	2.3	54	90	1	189	29	9	20	40	1.84
94335549--94335750	27	7.5	27	80	8	162	29	12	19	38	1.89
94335621--94335768	80	1.9	80	80	8	176	31	8	20	39	1.83
94336907--94336946	21	1.9	21	100	0	80	62	0	0	37	0.95
94336907--94336949	8	5.8	8	84	15	65	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94336912--94336954	16	2.6	17	85	14	63	62	2	0	34	1.08
94336906--94336938	13	2.5	13	100	0	66	60	0	0	39	0.97
94337834--94338174	27	12.6	27	82	3	373	39	19	9	31	1.83
94337834--94338121	81	3.6	81	92	1	445	39	19	9	31	1.83
94337834--94338175	81	4.2	81	89	3	422	39	19	9	31	1.83
94338214--94338436	27	8.3	27	84	1	277	36	20	17	24	1.94
94338784--94338842	22	2.7	22	81	5	66	20	27	22	30	1.98
94338999--94339106	27	4.0	26	84	5	117	20	22	21	36	1.96
94339228--94339302	31	2.4	31	81	0	87	18	17	14	49	1.80
94341284--94341348	32	2.0	32	96	0	121	32	1	18	47	1.58
94341934--94342002	24	2.7	26	84	4	88	24	23	20	31	1.98
94342175--94342229	20	2.8	19	78	8	65	36	10	16	36	1.84
94343006--94343073	30	2.3	30	85	10	86	19	19	27	33	1.96
94351510--94351715	38	5.5	37	76	11	204	22	21	25	31	1.98
94351530--94351703	75	2.3	75	87	1	249	22	22	25	29	1.99
94351710--94351864	43	3.6	43	91	0	247	10	25	31	32	1.90
94353445--94353548	48	2.2	48	81	6	113	30	22	30	16	1.95
94356960--94357181	38	5.8	38	94	2	340	21	23	26	28	1.99
94357174--94357285	43	2.6	43	100	0	224	9	26	33	29	1.89
94357893--94357923	10	3.1	10	100	0	62	38	0	29	32	1.57
94359659--94359807	74	2.0	74	93	0	253	32	9	25	32	1.88
94363431--94363560	66	1.9	69	84	7	176	20	31	16	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94372781--94372912	38	3.5	37	86	5	176	21	25	25	28	1.99
94372803--94372925	38	3.3	38	89	2	176	21	22	25	30	1.98
94372918--94373244	43	7.6	43	88	3	489	14	25	29	30	1.95
94372918--94373244	86	3.8	86	91	2	541	14	25	29	30	1.95
94379511--94379695	40	4.6	39	81	5	194	24	22	27	25	2.00
94379511--94379693	79	2.3	81	83	7	223	24	22	26	25	2.00
94379512--94379728	79	2.7	78	78	12	219	25	22	26	25	2.00
94381109--94381234	46	2.7	44	80	9	144	28	20	27	23	1.99
94381109--94381285	46	3.8	45	76	12	137	28	19	28	23	1.98
94383179--94383453	41	6.8	40	79	11	260	37	22	21	18	1.94
94383179--94383282	40	2.5	40	84	4	118	42	22	18	17	1.89
94383209--94383453	41	6.1	41	84	7	308	37	22	22	17	1.94
94383251--94383454	79	2.6	79	99	0	399	34	24	23	17	1.96
94383616--94383695	21	3.7	21	74	9	79	28	1	25	45	1.61
94383620--94383709	45	2.0	45	93	0	153	30	2	24	43	1.66
94383721--94383779	18	3.3	18	73	21	70	27	0	28	44	1.55
94383711--94383780	35	2.0	35	100	0	140	28	0	28	42	1.56
94383711--94383764	18	3.1	18	70	24	60	29	0	27	42	1.56
94383790--94383864	7	10.7	7	75	11	55	20	0	42	37	1.52
94383796--94383863	21	3.2	22	76	15	72	20	0	42	36	1.52
94384269--94384342	39	1.9	38	81	8	87	37	2	2	56	1.28
94384320--94384382	23	2.7	23	75	18	76	36	0	6	57	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94388619--94388918	43	7.0	43	99	0	582	22	21	32	23	1.98
94396566--94396631	32	2.1	32	100	0	132	37	19	6	36	1.77
94398345--94398665	48	6.7	48	80	6	287	28	20	28	22	1.99
94398338--94398664	96	3.4	94	84	5	347	28	20	27	23	1.99
94398345--94398667	144	2.2	144	86	1	425	28	21	27	22	1.99
94412428--94412594	85	2.0	85	85	2	228	26	16	23	32	1.96
94420761--94420989	40	5.7	40	88	4	320	23	21	27	27	1.99
94420761--94421015	80	3.2	80	86	5	322	24	22	27	26	2.00
94420761--94421015	40	6.4	40	88	4	263	24	22	27	26	2.00
94423615--94423657	10	4.3	10	82	8	52	32	2	0	65	1.06
94423611--94423668	18	3.1	18	79	15	64	39	1	0	58	1.08
94424672--94424710	16	2.4	16	79	12	53	48	0	5	46	1.24
94426931--94427016	35	2.5	35	94	0	154	39	9	12	38	1.76
94426931--94427028	18	5.5	18	84	4	128	39	9	12	38	1.75
94427151--94427344	44	4.4	44	76	7	162	34	15	23	26	1.94
94427336--94427812	119	4.0	119	93	0	783	33	17	18	29	1.94
94427734--94428003	83	3.2	83	93	1	459	31	20	20	27	1.97
94428397--94428494	18	5.5	18	87	4	146	39	11	12	36	1.78
94428388--94428492	35	2.9	35	92	4	165	39	10	12	38	1.77
94428977--94429035	16	3.5	16	74	23	50	35	1	0	62	1.05
94428970--94429044	30	2.6	29	76	17	75	36	1	0	62	1.04
94429012--94429061	26	1.9	26	83	0	64	36	4	0	60	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94431509--94431612	52	2.0	52	100	0	208	36	5	32	25	1.80
94432066--94432156	46	2.0	46	95	0	164	30	12	30	26	1.92
94432410--94432434	2	12.5	2	100	0	50	52	0	48	0	1.00
94434933--94434988	6	9.0	6	76	18	53	82	0	16	1	0.76
94434933--94434980	16	3.1	16	81	6	62	83	0	14	2	0.74
94434933--94434988	11	4.5	12	74	22	53	82	0	16	1	0.76
94434933--94434986	21	2.6	21	85	5	65	83	0	14	1	0.73
94435857--94436178	132	2.4	132	92	2	513	33	15	22	27	1.95
94435865--94436176	44	7.1	44	70	11	201	32	16	23	27	1.95
94436282--94436401	59	2.0	59	93	0	204	36	17	18	27	1.93
94436168--94436518	178	2.0	178	95	0	630	33	16	19	31	1.93
94436341--94437179	119	7.1	119	94	0	1408	33	17	18	30	1.94
94437101--94437355	83	3.1	83	100	0	510	32	19	20	27	1.96
94437314--94437398	43	2.0	43	92	0	143	35	21	14	29	1.92
94437231--94437482	127	2.0	126	92	0	423	33	20	18	27	1.96
94437889--94437973	18	4.8	18	88	4	129	38	10	12	37	1.79
94437880--94437974	35	2.7	35	95	1	163	38	9	13	37	1.78
94439969--94440010	14	2.9	15	85	7	59	76	0	16	7	1.00
94442751--94442820	28	2.5	28	90	4	106	32	27	12	27	1.93
94443204--94444095	101	8.8	101	99	0	1757	40	14	7	37	1.75
94447638--94448340	101	6.7	108	90	6	1133	40	14	7	37	1.74
94447638--94448340	210	3.3	210	99	0	1379	40	14	7	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94450470--94450527	30	1.9	30	92	0	98	32	13	25	27	1.94
94450868--94451082	95	2.3	91	83	4	243	28	20	29	21	1.98
94450868--94451185	49	6.7	47	75	8	245	28	20	28	21	1.98
94457556--94457736	27	6.7	27	78	8	188	27	12	19	40	1.87
94457560--94457715	82	1.9	82	86	2	224	28	14	17	39	1.89
94457556--94457769	27	7.9	27	76	9	166	28	14	18	39	1.89
94460959--94461183	40	5.6	40	80	7	224	25	23	27	24	2.00
94460959--94461183	80	2.8	80	82	3	274	25	23	27	24	2.00
94460959--94461182	120	1.9	121	83	6	294	25	22	27	24	2.00
94470599--94470652	26	2.1	26	82	6	65	42	5	11	40	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284