genome.fa.s9.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  115  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37981160--37981256	40	2.3	42	84	8	119	26	17	28	26	1.98
37981160--37981273	43	2.7	39	79	11	104	27	17	27	28	1.98
37984103--37984163	30	2.0	30	83	0	77	31	22	8	37	1.84
37991069--37991588	260	2.0	260	100	0	1040	34	21	19	24	1.96
37991581--37992216	318	2.0	318	100	0	1272	28	25	16	29	1.97
37992354--37992526	27	6.4	27	81	2	204	26	21	17	34	1.96
37992373--37992525	81	1.9	81	89	2	236	26	20	18	35	1.95
37992354--37992526	54	3.2	54	84	0	229	26	21	17	34	1.96
38003871--38003910	15	2.7	15	100	0	80	22	20	22	35	1.96
38008879--38008974	43	2.2	42	83	7	113	28	20	26	25	1.99
38018382--38018433	25	2.1	25	100	0	104	34	13	28	23	1.92
38028021--38028061	21	1.9	22	85	5	57	48	17	14	19	1.81
38030450--38030520	36	2.0	36	94	0	124	35	26	11	26	1.90
38030451--38030513	20	3.3	20	67	24	55	34	26	9	28	1.88
38030609--38031369	42	18.1	42	100	0	1522	26	26	7	40	1.81
38032965--38033145	40	4.6	40	82	4	197	25	26	23	24	2.00
38032965--38033145	81	2.3	79	83	2	211	25	26	23	24	2.00
38037722--38037832	56	2.0	56	98	0	213	40	22	5	31	1.77
38038553--38038764	106	2.0	106	98	0	406	33	12	11	42	1.78
38038882--38038927	24	1.9	25	86	8	69	36	10	4	47	1.58
38040236--38040296	30	2.0	30	83	0	77	31	22	8	37	1.84
38050059--38050093	17	2.1	17	88	0	52	22	11	5	60	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38051734--38051813	39	2.1	39	97	0	151	46	18	10	25	1.80
38051740--38051832	39	2.4	39	85	3	98	49	17	8	24	1.74
38054817--38054978	35	4.6	35	72	5	121	29	20	23	26	1.99
38057292--38057348	28	2.0	28	96	0	105	35	14	29	21	1.92
38066520--38066692	48	3.6	48	84	1	159	25	20	30	23	1.98
38066516--38066689	96	1.8	96	86	2	251	25	19	29	24	1.98
38072245--38072291	23	2.0	23	91	0	76	31	8	34	25	1.86
38073347--38073380	17	2.0	17	88	11	52	5	11	29	52	1.61
38077277--38077316	21	2.0	20	85	5	53	12	37	25	25	1.91
38085848--38085973	48	2.6	48	80	9	125	27	23	26	23	2.00
38086821--38086858	19	2.0	19	94	0	67	23	26	18	31	1.97
38099847--38100077	46	5.0	46	87	1	311	41	13	22	21	1.88
38099861--38100072	91	2.3	92	91	0	336	42	14	22	20	1.88
38099847--38100094	137	1.8	136	84	3	336	43	13	21	21	1.87
38100357--38100389	17	2.0	17	94	5	59	48	0	15	36	1.45
38101009--38101037	14	2.1	14	100	0	58	48	13	0	37	1.43
38107916--38107980	33	2.0	33	100	0	130	23	30	18	27	1.97
38112117--38112205	46	1.9	46	97	0	169	21	32	17	28	1.96
38113354--38113436	41	2.0	41	97	0	157	21	34	15	27	1.94
38118929--38119005	40	1.9	40	91	0	127	25	31	20	22	1.98
38119263--38119630	27	13.7	26	74	8	222	28	11	18	41	1.85
38119292--38119445	80	1.9	80	81	7	188	29	13	17	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38119264--38119472	107	2.0	107	100	0	418	30	12	18	39	1.87
38119263--38119630	54	6.9	54	73	11	281	28	11	18	41	1.85
38139212--38139372	28	5.7	28	83	8	168	26	15	33	24	1.95
38143713--38143803	45	2.0	45	95	0	164	34	28	6	30	1.83
38145650--38145871	48	4.6	48	85	3	252	28	28	16	26	1.97
38146299--38146357	3	19.7	3	92	0	100	33	0	0	66	0.92
38152458--38152536	24	3.1	25	79	16	99	37	15	22	24	1.92
38152449--38152547	28	3.7	27	84	13	132	35	14	25	25	1.93
38152571--38152711	51	2.7	51	88	1	219	31	13	24	29	1.93
38152671--38152750	39	2.1	39	90	4	126	32	10	27	30	1.89
38154517--38154591	33	2.3	33	86	6	100	21	22	16	40	1.91
38161948--38162165	110	2.0	110	94	0	382	41	13	15	29	1.85
38166755--38166896	40	3.6	40	91	2	216	24	22	27	25	2.00
38178571--38178832	39	6.7	40	87	7	337	25	22	27	24	2.00
38188031--38188206	46	3.8	46	78	14	200	21	21	28	28	1.98
38188028--38188199	93	1.8	93	93	2	301	21	21	29	27	1.99
38195597--38195772	46	3.8	46	76	12	189	20	21	30	28	1.98
38195594--38195765	93	1.8	93	92	0	290	20	21	30	27	1.98
38198812--38198993	40	4.6	40	90	2	278	24	22	25	26	2.00
38201595--38201705	6	17.8	6	70	20	77	48	14	17	19	1.81
38201595--38201705	31	3.5	31	87	3	143	48	14	17	19	1.81
38201837--38201938	27	3.8	25	85	7	105	37	21	22	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38201837--38201938	54	1.9	53	83	2	132	37	21	22	18	1.94
38202097--38202161	22	3.0	22	80	8	78	33	23	23	20	1.97
38202606--38202754	54	2.8	54	86	3	203	25	19	18	36	1.95
38202589--38202756	27	6.3	27	79	10	159	26	20	17	36	1.94
38202589--38202754	54	3.1	54	84	5	196	26	20	17	35	1.95
38202606--38202756	80	1.9	80	88	4	214	25	19	18	37	1.94
38202738--38203081	108	3.2	108	80	3	318	31	7	21	38	1.82
38202774--38203133	27	13.3	27	81	0	261	31	8	20	39	1.82
38204197--38204357	43	3.8	44	80	11	181	32	24	16	26	1.96
38204197--38204357	86	1.9	85	82	6	200	32	24	16	26	1.96
38207096--38207197	28	3.5	27	72	21	80	27	20	29	22	1.99
38207089--38207208	60	2.0	62	86	6	174	28	19	26	25	1.99
38210978--38211023	20	2.3	21	82	14	62	26	17	28	28	1.98
38215034--38215072	19	2.1	19	95	0	69	53	23	7	15	1.67
38217339--38217424	31	2.8	31	90	0	136	26	25	18	29	1.98
38217449--38217539	42	2.2	42	89	0	137	36	21	12	29	1.90
38217684--38217858	26	6.8	26	85	0	219	28	20	22	29	1.98
38217672--38217858	52	3.7	52	88	5	267	27	20	21	29	1.98
38218778--38218829	27	1.9	27	88	7	79	36	11	11	40	1.78
38218827--38218964	27	5.1	27	76	6	111	31	5	21	42	1.76
38218842--38218991	81	1.9	81	81	5	187	30	8	20	42	1.80
38218996--38219179	27	6.8	27	88	2	235	40	6	23	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38218996--38219179	54	3.4	54	90	1	262	40	6	23	29	1.80
38233666--38233732	17	3.2	22	70	22	63	31	4	22	41	1.73
38233666--38233742	39	2.0	39	82	5	93	31	6	22	40	1.79
38234599--38234645	20	2.3	20	92	0	76	19	31	29	19	1.96
38234608--38234650	20	2.2	20	95	0	77	13	25	34	25	1.93
38238954--38239325	189	2.0	189	91	3	615	32	17	15	34	1.91
38238954--38239323	94	3.9	94	91	2	584	32	17	15	34	1.91
38248826--38248855	3	10.0	3	92	0	51	33	3	0	63	1.11
38249667--38249777	56	2.0	56	96	3	197	36	28	7	26	1.83
38256051--38256167	39	3.0	39	84	0	135	31	11	27	29	1.92
38259027--38259198	79	2.2	80	85	5	224	25	20	26	26	1.99
38258974--38259198	40	5.7	40	84	5	235	25	21	26	26	2.00
38258974--38259204	119	1.9	120	82	6	290	25	21	26	25	2.00
38259027--38259231	79	2.6	80	80	7	215	26	20	26	26	1.99
38264247--38264499	131	1.9	131	100	0	506	32	16	12	38	1.86
38264500--38264534	4	8.8	4	100	0	70	48	25	0	25	1.51
38267652--38267679	14	2.0	14	100	0	56	42	14	7	35	1.73
38269679--38269722	22	2.0	22	95	0	79	31	0	29	38	1.58
38270584--38270654	34	2.1	34	100	0	142	30	8	16	43	1.78
38276370--38276525	27	5.8	27	77	11	151	36	21	23	19	1.95
38276388--38276525	54	2.6	54	87	2	188	36	22	22	18	1.95
38279454--38279478	12	2.1	12	100	0	50	32	40	0	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38282529--38282791	46	5.9	46	85	7	337	21	24	14	38	1.91
38282708--38282783	38	2.0	38	97	0	143	23	27	17	31	1.97
38286805--38286963	27	5.9	27	83	11	193	34	22	24	18	1.96
38286823--38286963	54	2.6	54	94	2	248	34	24	24	17	1.95
38288585--38288692	26	4.2	26	93	0	189	36	24	7	32	1.83
38289189--38289289	43	2.4	42	80	8	114	30	24	17	26	1.97
38291223--38291442	40	5.6	40	80	6	234	25	26	23	25	2.00
38297127--38297164	20	1.9	20	88	0	58	52	13	10	23	1.71
38297153--38297204	20	2.6	20	84	0	68	51	7	7	32	1.59
38305638--38305946	46	6.7	46	90	1	422	37	15	25	22	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284