genome.fa.s9.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  188  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63647594--63647633	20	2.0	20	90	0	62	50	12	10	27	1.72
63647582--63647648	34	1.9	35	90	3	109	46	13	8	31	1.74
63647617--63647656	14	2.9	14	84	0	53	42	17	7	32	1.77
63652663--63652725	30	2.1	30	93	0	108	25	3	15	55	1.55
63653406--63653453	5	9.4	5	86	4	60	79	0	6	14	0.92
63655442--63655466	10	2.5	10	100	0	50	20	8	8	64	1.46
63660030--63660078	24	2.0	24	100	0	98	32	8	24	34	1.85
63673770--63673819	6	8.3	6	95	0	91	0	2	50	48	1.12
63680077--63680117	16	2.7	16	81	7	50	43	9	2	43	1.50
63688765--63688791	4	6.8	4	100	0	54	25	0	0	74	0.83
63688917--63688993	31	2.5	31	87	4	111	25	20	11	41	1.86
63699937--63700005	28	2.4	28	85	9	95	63	0	0	36	0.94
63703393--63703439	21	2.2	21	85	11	60	40	12	8	38	1.74
63703889--63703962	31	2.4	31	88	4	105	50	8	6	35	1.59
63708535--63708573	18	2.2	18	86	9	53	17	2	0	79	0.84
63708535--63708573	17	2.2	18	86	4	53	17	2	0	79	0.84
63710352--63710383	6	5.3	6	96	0	55	37	0	46	15	1.46
63710410--63710437	13	2.2	13	100	0	56	85	0	14	0	0.59
63710410--63710438	7	4.3	7	91	8	51	86	0	13	0	0.58
63715386--63715431	18	2.8	17	78	15	53	30	41	28	0	1.56
63718521--63718548	3	9.3	3	100	0	56	32	35	0	32	1.58
63721789--63721858	35	2.0	35	100	0	140	34	2	11	51	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63722464--63722537	30	2.3	32	84	6	89	20	5	9	64	1.42
63727871--63727899	14	2.0	15	93	6	51	0	44	0	55	0.99
63728863--63728891	14	2.0	15	93	6	51	55	0	44	0	0.99
63733666--63733703	20	1.9	20	89	10	60	63	0	13	23	1.30
63733787--63733813	12	2.2	12	100	0	54	48	11	14	25	1.77
63738998--63739044	15	2.9	16	81	9	60	74	4	0	21	0.99
63742047--63742083	19	2.0	18	89	5	56	0	16	2	81	0.81
63748193--63748502	129	2.4	129	88	4	430	30	15	16	37	1.90
63750725--63750813	30	3.2	26	67	24	65	38	5	1	55	1.31
63750674--63750858	58	3.2	58	97	2	345	38	4	1	55	1.31
63750843--63750902	25	2.4	26	83	5	70	60	0	0	40	0.97
63750856--63750902	17	2.8	17	74	6	51	65	0	0	34	0.93
63760946--63760982	5	7.2	5	96	3	65	18	2	0	78	0.87
63761173--63761246	29	2.6	29	76	4	80	35	2	8	54	1.44
63770007--63770223	105	2.1	101	86	3	290	27	23	15	32	1.95
63770009--63770205	33	5.7	33	67	12	92	28	22	15	33	1.94
63773257--63773287	16	1.9	16	93	0	53	25	16	25	32	1.96
63775479--63775669	104	1.8	103	83	3	249	41	14	13	30	1.83
63776642--63776746	52	2.0	52	100	0	210	49	9	14	26	1.73
63778648--63778738	39	2.2	42	86	5	125	51	4	2	41	1.34
63778708--63778761	29	1.9	28	85	14	76	44	0	0	55	0.99
63788024--63788062	20	2.0	20	94	0	69	28	23	15	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63796196--63796555	50	7.2	50	73	7	345	30	20	23	25	1.98
63796126--63796629	100	5.1	100	93	2	794	31	19	23	25	1.98
63800440--63800488	24	2.0	24	88	0	71	38	4	10	46	1.57
63801616--63801657	22	1.9	22	85	0	57	47	2	2	47	1.28
63820829--63820885	18	3.2	18	92	0	96	31	17	24	26	1.97
63823132--63823169	19	2.0	19	100	0	76	36	5	21	36	1.76
63829037--63829129	3	31.3	3	82	6	109	31	3	1	64	1.16
63829226--63829259	10	3.0	12	83	16	54	41	14	0	44	1.45
63833223--63833251	15	1.9	15	100	0	58	13	48	3	34	1.60
63833684--63833712	15	1.9	15	100	0	58	13	48	3	34	1.60
63832864--63833785	461	2.0	461	97	0	1745	27	22	20	28	1.99
63835278--63835313	15	2.5	14	86	8	54	44	8	0	47	1.33
63835880--63835925	16	2.9	16	81	15	51	21	0	4	73	1.00
63836954--63837017	5	13.2	5	75	15	55	73	0	4	21	1.01
63836947--63837024	4	18.5	4	80	19	72	73	0	3	23	1.00
63836974--63837017	9	4.9	9	89	8	63	72	0	4	22	1.02
63846728--63846771	22	2.0	21	83	12	54	59	15	18	6	1.58
63846809--63846866	30	1.9	30	85	0	80	20	36	29	13	1.91
63852942--63853172	46	5.0	46	93	0	381	27	25	10	36	1.89
63858298--63858403	45	2.4	44	85	4	142	33	17	23	24	1.96
63861052--63861078	3	9.0	3	100	0	54	66	0	0	33	0.92
63870602--63870687	41	2.0	43	86	4	122	33	1	0	65	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63870782--63870879	41	2.4	42	96	1	180	12	28	39	19	1.88
63872970--63873031	31	1.9	32	90	6	99	20	25	24	29	1.99
63873112--63873256	43	3.4	42	81	6	150	17	19	27	35	1.95
63873222--63873444	43	5.1	43	78	5	157	25	32	20	21	1.98
63873752--63873863	21	5.3	21	84	0	125	3	42	17	35	1.67
63873835--63873978	66	2.2	66	85	5	184	14	29	17	38	1.89
63873874--63874004	66	2.0	66	84	3	174	16	24	18	41	1.90
63875724--63875777	21	2.6	21	100	0	108	3	44	12	38	1.61
63875724--63875836	21	5.4	21	84	0	100	4	41	15	38	1.68
63875807--63875972	66	2.5	66	84	3	201	13	28	18	39	1.89
63881405--63881438	16	2.1	16	94	0	59	32	0	14	52	1.42
63881419--63881474	25	2.2	25	83	0	67	35	5	14	44	1.68
63881476--63881673	9	22.7	9	66	16	78	36	3	15	44	1.64
63881547--63881608	16	3.8	16	75	21	56	32	3	20	43	1.68
63881596--63881748	34	4.7	34	80	9	183	37	3	10	48	1.54
63881596--63881881	62	4.7	58	70	16	188	38	2	10	47	1.53
63881596--63881881	96	3.0	96	88	6	458	38	2	10	47	1.53
63881747--63881881	34	4.1	34	84	8	174	40	2	11	46	1.52
63882466--63882518	24	2.2	24	93	0	88	49	1	5	43	1.37
63882944--63882981	17	2.2	17	95	0	67	39	13	36	10	1.79
63883222--63883289	33	2.1	33	94	0	118	35	29	2	32	1.73
63883511--63883549	16	2.6	16	88	8	55	33	5	38	23	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63884359--63884401	22	2.0	22	100	0	86	32	46	2	18	1.62
63884731--63884855	61	2.0	62	93	4	216	40	32	4	21	1.74
63884857--63884928	37	1.9	38	88	2	110	36	41	1	20	1.61
63885696--63886055	41	8.8	41	84	4	386	32	25	25	16	1.96
63885736--63886053	41	7.8	41	87	2	397	32	26	25	16	1.96
63898800--63898845	20	2.4	19	77	3	56	69	0	2	28	1.00
63903210--63903257	21	2.3	21	81	0	60	12	50	10	27	1.73
63904741--63904974	113	2.1	113	82	8	282	21	22	24	31	1.98
63905312--63905360	18	2.5	21	80	9	59	61	10	2	26	1.39
63905626--63905656	15	2.0	16	93	6	55	16	0	45	38	1.47
63905948--63906025	14	5.6	14	73	0	66	7	0	44	47	1.31
63906443--63906951	230	2.2	230	89	1	761	28	18	19	33	1.95
63907281--63907324	19	2.3	19	84	0	61	31	43	2	22	1.66
63908838--63908899	20	3.2	20	86	4	90	46	8	4	40	1.55
63908958--63909048	19	5.1	18	68	17	64	50	20	0	28	1.49
63908938--63909300	26	14.2	26	92	2	592	47	20	0	31	1.53
63908942--63909300	77	4.7	77	96	1	650	47	20	0	31	1.53
63909241--63909328	18	4.4	18	70	25	61	45	20	0	34	1.51
63909292--63909345	9	5.7	10	79	20	55	42	20	0	37	1.52
63909266--63909331	18	3.6	18	84	10	89	46	18	0	34	1.49
63914796--63914866	21	3.4	21	80	0	79	33	18	45	2	1.64
63915090--63915123	14	2.4	14	95	0	59	17	8	20	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63915188--63915561	42	9.0	40	89	5	318	26	21	21	31	1.98
63915277--63915563	42	6.8	42	96	0	504	22	22	21	33	1.98
63915191--63915562	126	3.0	126	89	2	507	26	21	21	31	1.98
63920402--63920542	42	3.4	42	78	7	142	43	16	23	16	1.87
63920384--63920466	21	4.0	21	73	6	78	44	18	21	15	1.86
63920476--63920543	21	3.2	22	72	19	63	41	16	26	16	1.88
63922832--63922898	34	1.9	35	87	3	100	31	8	14	44	1.76
63925266--63925436	10	17.4	10	68	12	95	60	3	2	33	1.29
63925256--63925436	20	9.3	19	70	11	107	60	3	3	32	1.29
63925257--63925386	28	4.4	28	72	17	77	60	3	3	33	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284