Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  191  of  284  ( 34012 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64468276--64468304
3
9.7
3
100
0
58
31
0
0
68
0.89
64468306--64468490
73
2.5
73
96
0
343
28
7
24
40
1.81
64471306--64471341
13
2.8
13
95
0
63
72
0
27
0
0.85
64473612--64473664
3
17.7
3
80
7
63
62
1
5
30
1.29
64474567--64474606
20
2.0
20
85
9
55
2
17
25
55
1.55
64476571--64476620
11
4.5
11
82
0
55
18
8
10
64
1.48
64478122--64478568
48
9.3
48
90
0
653
21
17
26
34
1.95
64478265--64478340
24
3.3
21
67
19
62
21
19
26
32
1.97
64478361--64478432
24
3.1
21
64
21
54
22
19
23
34
1.96
64480415--64480453
16
2.4
16
95
0
69
41
10
7
41
1.68
64487909--64487971
21
3.2
20
75
6
65
71
0
20
7
1.11
64503428--64503466
15
2.6
15
87
0
51
79
10
10
0
0.94
64503738--64503763
13
2.0
13
100
0
52
15
0
7
76
0.99
64503847--64503874
13
2.2
13
100
0
56
32
0
21
46
1.52
64505656--64505697
21
2.0
21
100
0
84
28
28
9
33
1.88
64507731--64507777
23
2.0
23
87
0
67
42
29
12
14
1.83
64508924--64508985
31
1.9
33
84
15
85
24
32
1
41
1.64
64513411--64513439
13
2.2
13
100
0
58
31
0
13
55
1.39
64516370--64516434
31
2.1
31
97
0
121
43
10
15
30
1.81
64517583--64517628
6
7.7
6
83
9
58
13
4
0
82
0.81
64517583--64517628
19
2.6
19
90
10
71
13
4
0
82
0.81
64518844--64519037
47
4.0
47
80
5
174
24
17
28
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64525792--64526206
37
9.6
43
73
23
179
35
13
22
28
1.92
64525858--64526095
46
5.3
47
84
8
266
36
13
21
29
1.91
64525792--64526095
87
3.3
93
80
12
349
35
13
22
29
1.92
64525931--64525998
35
2.0
34
91
2
109
38
11
20
29
1.88
64525832--64526115
133
2.1
135
92
1
464
34
14
21
29
1.93
64526059--64526204
37
4.0
37
91
1
233
36
16
22
24
1.94
64527153--64527233
41
2.0
41
95
4
146
34
20
8
35
1.84
64530681--64530721
17
2.4
17
84
8
57
75
4
12
7
1.16
64538997--64539172
50
3.5
49
83
7
194
28
27
18
25
1.98
64538997--64539183
101
1.9
99
86
4
268
27
28
18
25
1.98
64544454--64544510
28
2.0
28
100
0
114
31
21
7
40
1.80
64544498--64544926
143
3.0
143
98
0
831
37
20
6
35
1.79
64570457--64570504
21
2.3
21
83
13
64
66
2
0
31
1.03
64570459--64570515
21
2.8
19
77
15
53
63
1
1
33
1.15
64578493--64578527
12
3.0
11
88
12
52
85
2
11
0
0.69
64581092--64581132
20
2.2
20
86
8
59
60
9
4
24
1.47
64583692--64583774
40
2.1
40
83
0
103
38
16
10
33
1.84
64590598--64590634
17
2.2
17
100
0
74
29
0
16
54
1.43
64599309--64599540
40
5.8
40
91
1
315
28
27
19
24
1.99
64614353--64614410
28
2.1
28
96
0
107
41
22
22
13
1.89
64633918--64633956
19
1.9
19
85
10
51
58
7
2
30
1.39
64636097--64636171
11
6.9
11
83
10
93
44
1
0
54
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64636106--64636171
5
12.4
5
84
10
62
43
1
0
54
1.09
64638213--64638237
2
12.5
2
100
0
50
52
0
0
48
1.00
64639150--64639210
22
2.8
22
87
7
97
14
21
18
45
1.84
64640124--64640404
106
2.6
106
81
2
321
31
22
20
25
1.98
64641862--64641894
17
2.0
17
88
5
50
45
0
6
48
1.27
64650657--64650707
25
2.1
24
89
10
77
49
15
17
17
1.81
64652022--64652232
46
4.6
47
88
1
275
19
23
14
42
1.88
64652022--64652235
93
2.3
92
87
4
297
20
23
14
42
1.88
64656103--64656137
16
2.2
16
100
0
70
42
5
40
11
1.65
64657289--64657382
31
3.1
31
72
15
88
36
0
5
58
1.21
64663224--64663299
25
3.2
25
65
14
61
44
11
19
23
1.84
64663202--64663434
46
5.0
46
82
8
263
42
13
21
21
1.87
64664436--64664476
11
3.7
11
80
0
55
19
14
9
56
1.66
64666080--64666124
22
2.0
23
87
12
67
24
28
4
42
1.74
64667252--64667523
46
5.9
46
85
2
323
22
23
13
41
1.89
64675710--64675788
27
3.0
24
72
16
68
63
2
5
29
1.29
64676032--64676072
21
1.9
22
85
5
57
56
12
2
29
1.49
64677505--64677626
45
2.7
45
88
2
183
31
22
18
27
1.98
64677506--64677646
45
3.1
45
82
8
162
28
22
18
30
1.97
64677558--64678170
177
3.5
177
91
0
985
30
21
18
29
1.97
64677727--64677823
45
2.2
44
85
7
124
28
21
16
32
1.95
64682802--64682832
15
2.0
16
93
6
55
51
6
22
19
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64686390--64686421
11
2.9
11
90
0
55
90
0
9
0
0.45
64686651--64686675
13
1.9
13
100
0
50
68
0
8
24
1.16
64687930--64688008
36
2.2
36
90
0
122
7
22
13
55
1.63
64687973--64687998
13
2.0
13
100
0
52
0
30
7
61
1.24
64689964--64689989
11
2.4
11
100
0
52
7
38
7
46
1.61
64692989--64693023
18
2.0
17
88
5
52
45
0
0
54
0.99
64693109--64693143
18
2.0
17
88
5
52
45
0
0
54
0.99
64693308--64693393
44
1.9
45
85
2
120
36
29
6
27
1.83
64693379--64693447
16
4.2
16
88
3
111
36
36
1
26
1.66
64693379--64693447
33
2.1
32
91
2
111
36
36
1
26
1.66
64694362--64694424
29
2.1
31
85
5
85
46
1
0
52
1.10
64696660--64696745
43
2.0
43
95
4
156
43
16
0
40
1.48
64716819--64716879
30
2.0
30
87
6
88
29
3
0
67
1.07
64716840--64716892
15
3.6
15
78
12
56
28
3
0
67
1.07
64721860--64722060
87
2.3
89
77
10
207
31
16
23
28
1.96
64721754--64722193
220
2.0
220
89
0
664
32
18
22
27
1.97
64722180--64722442
41
6.3
41
94
2
400
29
13
27
29
1.94
64723577--64723699
18
6.8
18
70
24
66
34
3
0
60
1.18
64723661--64723713
15
3.6
15
78
12
56
28
3
0
67
1.07
64724880--64724919
14
2.9
14
96
0
71
17
37
12
32
1.87
64726245--64726419
91
1.9
91
95
0
314
53
13
10
22
1.70
64743365--64743394
15
2.0
15
93
0
51
0
50
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64743365--64743419
21
2.6
21
80
13
60
5
45
0
49
1.25
64743417--64743455
6
6.5
6
90
0
60
2
48
0
48
1.15
64743384--64743432
21
2.4
21
79
3
55
6
46
0
46
1.27
64748472--64748519
25
1.9
25
91
0
78
6
25
20
47
1.73
64754046--64754092
17
2.8
17
96
0
85
4
6
25
63
1.36
64756025--64756083
10
5.9
10
77
15
59
23
0
1
74
0.91
64756037--64756079
4
11.2
4
90
9
72
23
0
0
76
0.78
64756027--64756083
22
2.6
22
94
0
96
22
0
1
75
0.90
64756027--64756102
18
4.2
18
83
8
82
19
3
1
75
1.04
64760412--64760461
8
6.2
8
85
0
73
82
0
6
12
0.85
64760413--64760470
16
3.4
17
81
13
75
82
0
6
10
0.83
64760421--64760482
21
2.7
21
82
12
61
80
0
6
12
0.89
64762170--64762208
18
2.2
17
86
13
53
33
0
20
46
1.51
64762434--64762531
23
4.3
23
90
2
162
20
21
26
31
1.98
64762436--64762524
45
2.0
45
95
0
160
19
22
26
31
1.97
64769542--64769580
18
2.2
17
86
13
53
33
0
20
46
1.51
64769806--64769903
23
4.3
23
90
2
162
20
21
26
31
1.98
64769808--64769896
45
2.0
45
95
0
160
19
22
26
31
1.97
64771969--64772100
39
3.4
39
90
2
185
27
25
17
30
1.97
64778911--64778978
16
4.2
16
88
0
109
26
0
33
39
1.57
64779194--64779235
15
2.7
16
82
14
52
52
2
0
45
1.13
64779203--64779244
15
2.9
15
82
10
52
52
0
0
47
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64779229--64779416
61
3.1
61
69
17
201
48
6
1
43
1.38
64779192--64779512
120
2.7
120
97
0
597
49
5
1
43
1.37
64779309--64779355
16
3.0
16
78
12
53
51
2
0
46
1.13
64779443--64779484
15
2.9
15
82
10
52
52
0
0
47
1.00
64788379--64788425
22
2.1
22
96
0
85
27
21
38
12
1.90
64789043--64789501
230
2.0
230
99
0
900
35
23
10
29
1.88
64796221--64796261
21
1.9
22
90
5
66
21
7
12
58
1.58
64797146--64802971
728
8.0
728
99
0
11427
25
18
20
36
1.95
64806875--64806915
22
2.0
22
85
9
59
29
0
7
63
1.21
64807812--64807903
48
1.9
48
95
0
166
30
18
25
26
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284