Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  181  of  284  ( 34012 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61200660--61200694
17
2.1
16
89
5
52
2
8
5
82
0.91
61202639--61202678
10
4.0
10
80
0
53
30
0
2
67
1.04
61202626--61202676
20
2.5
19
84
9
66
31
0
5
62
1.19
61203416--61203449
17
2.0
17
88
0
50
64
0
0
35
0.94
61203486--61203534
20
2.5
20
78
18
57
63
0
4
32
1.13
61204866--61204925
31
1.9
31
86
3
84
41
6
15
36
1.73
61209759--61209826
28
2.4
27
80
9
73
32
1
7
58
1.34
61212087--61212195
44
2.6
41
74
17
98
44
0
4
50
1.29
61212120--61212417
27
10.4
28
66
19
116
41
1
3
53
1.26
61212239--61212272
17
2.0
17
100
0
68
41
0
0
58
0.98
61212239--61212286
15
3.0
15
81
9
51
41
2
0
56
1.11
61212037--61212526
117
4.3
117
93
3
795
42
1
3
51
1.30
61212356--61212389
17
2.0
17
100
0
68
41
0
0
58
0.98
61212473--61212506
17
2.0
17
100
0
68
41
0
0
58
0.98
61212473--61212520
15
3.0
15
81
9
51
41
2
0
56
1.11
61212654--61212758
44
2.5
41
78
18
133
36
30
3
29
1.75
61212670--61212760
46
2.0
46
93
4
159
38
30
4
26
1.76
61212740--61212776
16
2.3
16
95
0
65
24
32
5
37
1.78
61229134--61229334
47
4.2
47
84
2
215
33
30
13
21
1.92
61243817--61243991
49
3.5
49
85
3
260
29
26
18
25
1.98
61243804--61243998
49
3.9
49
83
2
255
28
26
19
25
1.99
61243804--61243996
100
1.9
100
96
0
359
28
25
19
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61244146--61244180
5
7.0
5
90
0
52
77
2
0
20
0.90
61245524--61245593
18
3.8
18
82
1
86
28
5
2
62
1.32
61247915--61247950
19
1.9
18
94
5
63
72
8
11
8
1.29
61250473--61250503
16
1.9
16
93
0
53
41
0
6
51
1.27
61266208--61266253
23
2.0
23
87
8
67
13
2
15
69
1.28
61266241--61266277
19
2.0
19
89
5
58
0
0
24
75
0.80
61267570--61267616
5
9.4
5
100
0
94
61
0
38
0
0.96
61268793--61269051
46
5.5
46
77
10
206
23
29
16
29
1.97
61268793--61269051
140
1.8
140
82
7
337
23
29
16
29
1.97
61275354--61275720
47
7.8
47
75
10
247
23
29
18
28
1.98
61275352--61275761
47
8.7
46
75
9
216
23
29
18
28
1.98
61275352--61275764
94
4.4
95
73
13
295
23
29
18
28
1.98
61284747--61284811
23
2.7
24
79
11
71
23
26
0
50
1.49
61284757--61284829
12
6.2
12
76
10
62
19
27
1
52
1.54
61287585--61287630
11
4.1
11
78
15
58
67
0
2
30
1.03
61289121--61289313
36
5.1
36
71
14
156
35
20
20
23
1.96
61289103--61289357
76
3.4
76
84
2
332
36
19
19
24
1.94
61289172--61289296
40
3.2
40
73
17
136
40
20
16
22
1.91
61291239--61291372
53
2.4
53
83
7
151
25
17
25
31
1.97
61300925--61300966
22
2.0
21
85
4
57
71
4
2
21
1.16
61301801--61301838
4
9.2
4
83
16
51
73
0
2
23
0.95
61301800--61301839
21
1.9
21
100
0
80
72
0
2
25
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61301952--61302020
27
2.6
26
76
17
70
66
2
1
28
1.14
61307694--61307741
19
2.6
18
83
9
60
35
4
0
60
1.16
61307749--61307809
18
3.2
19
81
13
72
32
8
0
59
1.27
61307881--61307937
29
2.0
29
82
6
71
24
5
1
68
1.20
61307918--61307993
38
2.1
35
83
11
91
22
2
9
65
1.34
61310816--61310851
18
1.9
19
88
5
56
5
16
2
75
1.12
61313491--61313557
27
2.4
29
82
9
86
32
7
1
58
1.35
61313623--61313669
3
15.0
3
91
8
76
34
0
0
65
0.93
61318340--61318381
15
2.8
15
88
0
66
16
16
14
52
1.75
61321040--61321257
39
5.6
39
88
0
301
12
23
24
39
1.89
61321047--61321225
19
9.2
19
66
15
80
11
23
24
40
1.87
61322692--61322807
52
2.2
52
95
0
205
23
31
26
18
1.97
61326804--61327093
44
6.5
43
69
12
167
30
18
22
28
1.97
61328788--61328854
27
2.4
29
80
9
77
31
7
2
58
1.41
61333446--61333472
3
9.0
3
100
0
54
33
0
0
66
0.92
61335710--61335736
6
4.5
6
100
0
54
48
0
0
51
1.00
61341452--61341516
33
2.0
33
87
0
94
24
15
9
50
1.73
61341987--61342067
11
7.6
10
78
12
63
59
2
2
35
1.24
61341977--61342068
21
4.2
21
72
9
69
55
2
3
39
1.28
61341987--61342112
10
12.3
10
74
14
80
59
2
2
35
1.23
61359164--61359536
101
3.8
100
82
3
414
29
26
17
26
1.98
61359164--61359536
50
7.5
50
79
4
414
29
26
17
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61359158--61359536
151
2.5
151
90
2
606
29
26
17
26
1.98
61363314--61363382
25
2.7
25
88
4
93
18
4
8
68
1.33
61372771--61372898
44
2.8
45
82
4
150
27
22
21
28
1.99
61373854--61373956
51
2.0
51
83
3
127
11
31
22
34
1.90
61378865--61379089
40
5.6
40
85
2
290
23
27
24
25
2.00
61378829--61379089
80
3.3
80
83
3
312
23
26
24
25
2.00
61382154--61382213
18
3.5
17
80
13
77
38
10
18
33
1.84
61382560--61382666
7
15.7
7
69
18
50
38
4
0
57
1.20
61382568--61382702
21
6.7
21
67
17
65
36
5
0
57
1.23
61390780--61390874
11
9.3
10
73
15
79
82
0
17
0
0.68
61390778--61390880
16
6.5
15
80
16
102
81
0
18
0
0.69
61390778--61390886
25
4.5
24
81
14
116
78
0
20
0
0.80
61391842--61391928
44
2.0
44
93
0
147
32
14
25
27
1.95
61391920--61392513
119
5.0
119
95
0
1035
33
18
18
29
1.94
61392437--61392735
83
3.6
83
93
2
485
33
19
19
27
1.96
61393286--61393374
17
4.9
19
86
10
134
37
11
15
35
1.84
61393294--61393381
35
2.5
36
90
7
146
37
11
15
35
1.84
61396438--61396478
21
1.9
22
85
5
57
26
21
7
43
1.79
61406642--61406692
11
4.8
11
85
9
63
11
7
0
80
0.90
61406642--61406692
10
4.9
10
86
13
59
11
7
0
80
0.90
61406642--61406695
21
2.6
21
88
5
74
11
9
0
79
0.93
61408432--61408488
26
2.2
26
100
0
114
36
7
14
42
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61411365--61411405
20
2.0
21
85
9
57
17
4
4
73
1.19
61412474--61412515
20
2.2
20
82
4
50
7
2
21
69
1.25
61414974--61415144
93
1.8
93
94
0
306
27
29
21
21
1.98
61414966--61415141
46
3.8
46
81
10
214
28
29
21
21
1.98
61416872--61416916
22
2.0
22
83
8
56
40
4
13
42
1.64
61416881--61416923
21
2.0
21
82
8
52
41
9
9
39
1.69
61431293--61431330
16
2.4
16
86
4
60
55
2
7
34
1.43
61437065--61437124
23
2.6
23
83
0
75
23
25
18
33
1.97
61438506--61438576
20
3.3
20
69
14
61
38
4
26
30
1.76
61438492--61438579
44
2.0
44
95
0
158
40
4
26
28
1.75
61440181--61440247
34
2.0
34
90
0
107
28
2
23
44
1.68
61446926--61447202
76
3.7
74
77
10
271
46
5
11
35
1.64
61450454--61450514
30
2.0
30
83
0
77
31
22
8
37
1.84
61477973--61478023
21
2.4
21
86
0
66
25
19
15
39
1.91
61482100--61482137
16
2.4
16
82
8
51
44
0
2
52
1.14
61497431--61497464
16
2.0
18
88
11
54
44
0
14
41
1.45
61497833--61497873
20
2.1
19
86
4
55
39
7
7
46
1.60
61502552--61502652
43
2.3
43
86
0
121
32
17
15
33
1.92
61507675--61507852
27
6.6
27
77
6
137
30
28
15
25
1.96
61507675--61507852
54
3.3
54
78
7
164
30
28
15
25
1.96
61509966--61510401
218
2.0
218
99
0
854
33
19
13
34
1.90
61510390--61510440
26
2.0
26
92
0
84
54
17
1
25
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61515396--61515571
46
3.8
46
79
12
216
20
21
29
28
1.98
61515393--61515564
93
1.8
93
96
0
317
20
21
29
27
1.98
61522979--61523151
46
3.7
46
79
13
210
20
21
28
28
1.98
61522976--61523147
93
1.8
93
96
0
317
20
21
29
27
1.98
61526863--61526918
27
2.1
27
100
0
112
50
17
0
32
1.47
61536522--61536598
14
5.0
15
71
20
52
42
14
9
33
1.77
61536538--61536577
20
2.0
20
90
0
62
50
12
10
27
1.72
61536526--61536592
34
1.9
35
90
3
109
46
13
8
31
1.74
61538541--61538573
18
1.9
17
88
11
50
42
12
15
30
1.83
61546045--61546088
20
2.2
20
88
4
63
27
18
27
27
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284