genome.fa.s9.2.7.7.80.10.50.1000.278.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  278  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93560067--93560110	19	2.3	19	84	4	52	4	13	11	70	1.31
93560067--93560120	22	2.6	21	82	11	58	3	12	12	70	1.30
93560076--93560123	21	2.4	19	83	13	60	2	8	12	77	1.08
93560673--93560789	30	3.9	29	77	11	94	44	3	22	29	1.69
93560688--93560789	30	3.4	30	84	2	134	44	3	22	29	1.71
93560788--93560820	14	2.3	15	89	5	50	24	0	3	72	0.98
93561033--93561101	34	2.0	34	97	0	129	43	8	13	34	1.74
93561641--93561807	42	4.0	42	82	0	172	16	23	17	41	1.90
93561651--93561807	84	1.9	84	82	0	197	14	23	18	43	1.87
93564196--93564238	21	2.0	21	86	0	59	34	6	13	44	1.72
93565592--93565673	32	2.6	32	86	0	119	29	2	15	52	1.56
93571890--93571969	40	2.0	40	95	0	142	40	18	10	31	1.84
93576099--93576137	11	3.5	11	89	3	51	69	0	2	28	1.02
93580256--93580309	21	2.7	21	81	16	69	62	5	3	27	1.34
93581940--93581979	21	1.9	21	85	10	55	15	20	5	60	1.53
93585419--93585498	40	2.0	40	97	0	151	16	25	26	32	1.96
93590040--93590143	52	2.0	52	98	0	199	34	14	26	24	1.94
93596455--93596493	15	2.5	16	83	4	53	58	2	0	38	1.12
93596791--93596869	31	2.5	31	83	4	88	36	11	7	44	1.69
93600014--93600169	33	4.7	33	70	12	113	28	19	28	23	1.98
93600183--93600294	45	2.5	45	91	0	170	36	17	25	20	1.94
93600183--93600353	45	3.8	45	80	0	144	38	18	22	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93601522--93601630	58	1.9	58	83	5	141	33	22	15	27	1.95
93611172--93611220	24	2.0	24	100	0	98	28	12	20	38	1.89
93621721--93621904	79	2.3	81	82	11	222	25	27	22	25	2.00
93621721--93621904	40	4.6	41	83	12	199	25	27	22	25	2.00
93629470--93629602	68	2.0	68	93	0	230	42	15	13	29	1.85
93636196--93636328	68	2.0	68	93	0	230	42	15	13	29	1.85
93643702--93644098	40	9.9	40	98	0	713	30	20	27	21	1.98
93651564--93651662	37	2.7	37	80	3	110	39	16	13	31	1.86
93651575--93651689	37	3.1	37	76	9	101	36	13	13	35	1.85
93657237--93657424	99	1.9	99	90	2	297	30	19	17	31	1.95
93660858--93660898	22	1.9	21	85	14	57	17	7	2	73	1.17
93660852--93660903	27	2.0	26	85	11	70	17	7	1	73	1.16
93673325--93673364	19	2.1	19	85	0	53	22	22	22	32	1.98
93675847--93675895	25	2.0	25	88	8	73	46	0	2	51	1.12
93677499--93677623	41	3.0	41	85	1	151	27	18	21	32	1.97
93677817--93677863	21	2.2	21	84	0	58	36	2	17	44	1.60
93687870--93688111	50	4.9	50	82	3	258	28	21	28	21	1.99
93692870--93692930	15	3.8	16	77	12	63	50	27	0	21	1.49
93696673--93696823	75	2.0	75	96	0	275	22	25	14	37	1.92
93698291--93698491	23	8.5	24	69	10	76	38	17	14	28	1.89
93698429--93698507	23	3.4	24	75	5	81	41	16	18	22	1.90
93699348--93699471	43	2.9	42	80	9	144	29	29	19	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93700613--93700641	14	2.0	15	93	6	51	51	20	0	27	1.47
93718937--93719289	47	7.4	47	93	1	553	32	8	30	28	1.87
93725350--93725426	38	2.0	38	92	0	127	31	15	20	32	1.94
93725826--93726205	190	2.0	190	98	0	742	27	20	18	34	1.95
93728290--93728414	42	2.9	42	77	8	119	29	26	18	25	1.98
93728283--93728414	43	3.1	42	77	8	133	31	25	18	25	1.98
93732156--93733174	94	10.8	94	99	0	1968	31	21	25	21	1.98
93736654--93736784	67	2.0	67	96	0	244	34	12	15	37	1.86
93737531--93737571	22	1.9	22	90	5	66	17	26	43	12	1.84
93744895--93745800	46	19.7	46	96	2	1658	21	17	28	32	1.96
93748764--93748823	15	4.1	14	79	8	66	13	13	15	58	1.64
93751230--93751723	46	10.7	46	90	3	780	21	22	28	27	1.99
93755554--93755832	95	2.9	95	99	0	549	41	3	18	36	1.67
93768277--93768396	46	2.6	45	79	9	127	30	19	27	22	1.98
93768461--93768587	49	2.6	49	83	2	157	29	19	26	23	1.98
93770857--93771089	40	5.9	40	78	9	219	22	28	25	23	1.99
93770864--93771086	79	2.8	80	81	5	240	22	28	26	22	1.99
93770869--93771086	119	1.8	119	94	2	384	21	28	26	22	1.99
93773849--93773911	19	3.3	19	84	6	83	12	28	38	20	1.89
93775725--93775849	46	2.7	46	82	4	155	22	29	21	26	1.99
93783296--93783415	46	2.7	44	80	11	136	25	30	17	27	1.97
93785067--93785226	38	4.0	38	74	13	158	30	24	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93785072--93785278	85	2.4	85	86	3	299	30	24	14	29	1.95
93785195--93785323	48	2.7	48	81	3	145	33	23	13	29	1.93
93791156--93791292	48	2.9	47	85	4	175	27	18	25	28	1.98
93796416--93796573	43	3.7	43	75	10	126	31	26	17	25	1.97
93797912--93797939	12	2.3	12	100	0	56	28	35	21	14	1.92
93806026--93806201	12	13.2	14	69	22	87	31	2	1	64	1.16
93806026--93806162	33	4.4	31	69	17	88	30	2	1	64	1.17
93810372--93810409	12	3.2	12	92	0	58	44	13	21	21	1.85
93818300--93818471	44	3.9	44	74	14	158	29	14	29	26	1.95
93818389--93818547	76	2.1	76	94	3	277	28	15	27	28	1.96
93818464--93818976	90	5.7	90	97	0	915	30	15	27	26	1.96
93818916--93819042	65	2.0	65	91	0	209	29	18	22	29	1.97
93818642--93819281	335	1.9	335	92	1	1079	31	15	26	26	1.96
93819055--93819285	45	5.1	45	66	12	159	32	16	25	25	1.96
93818822--93819131	155	2.0	155	90	0	494	30	15	25	28	1.96
93818977--93819285	90	3.4	90	92	0	519	32	15	25	26	1.96
93818732--93819221	245	2.0	245	93	0	829	31	15	25	27	1.96
93820203--93820236	8	4.2	8	100	0	68	0	23	64	11	1.26
93820729--93820767	21	1.9	20	85	15	53	23	5	0	71	1.05
93820768--93820822	22	2.3	23	87	9	76	38	5	0	56	1.23
93820833--93821003	12	15.1	12	72	22	79	32	2	1	63	1.14
93820834--93820996	7	21.1	7	68	22	62	31	2	0	65	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93820866--93820940	19	3.7	19	70	16	62	32	4	1	62	1.22
93820873--93820951	14	5.6	14	80	17	83	32	5	1	60	1.26
93820834--93820970	33	4.4	31	71	17	97	31	2	0	64	1.13
93821376--93821410	18	1.9	18	88	0	52	17	0	8	74	1.06
93825869--93826046	27	6.6	27	83	3	205	29	28	15	26	1.96
93825890--93826045	82	1.9	81	86	3	224	28	28	15	26	1.96
93834713--93834746	15	2.3	15	90	5	52	35	2	2	58	1.28
93835076--93835115	21	2.0	20	90	5	62	22	30	37	10	1.87
93836280--93836543	49	5.6	48	74	11	201	25	29	17	26	1.98
93845770--93845805	19	1.9	19	88	5	56	13	8	0	77	0.98
93850701--93850741	21	2.0	21	90	0	64	39	2	19	39	1.65
93853437--93853591	26	6.2	26	68	14	110	20	21	18	39	1.93
93858769--93858808	8	5.3	7	91	8	53	80	0	0	20	0.72
93858777--93858806	15	1.9	16	93	6	53	80	0	0	20	0.72
93859850--93859876	14	1.9	14	100	0	54	81	0	3	14	0.82
93861236--93861309	37	2.0	37	100	0	148	40	8	16	35	1.78
93863780--93863886	40	2.7	40	95	0	196	29	24	22	23	1.99
93884767--93884805	14	2.5	16	88	12	55	35	2	0	61	1.10
93885094--93885118	9	2.8	9	100	0	50	20	0	0	80	0.72
93885142--93885201	29	2.2	26	80	14	66	31	0	0	68	0.90
93887431--93887533	51	2.0	51	96	0	188	37	13	25	23	1.91
93891596--93891630	17	2.1	17	100	0	70	14	5	22	57	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93891598--93891638	17	2.4	17	91	0	64	14	4	26	53	1.61
93906434--93906666	40	5.8	40	84	5	281	26	28	21	24	1.99
93906434--93906626	82	2.4	83	87	5	279	24	28	22	24	1.99
93906434--93906666	122	1.9	122	85	1	324	26	28	21	24	1.99
93909737--93909796	30	2.0	30	93	0	102	35	8	15	41	1.77
93910436--93910460	13	1.9	13	100	0	50	0	48	28	24	1.52
93910677--93910737	31	2.0	31	100	0	122	21	26	36	16	1.94
93910950--93911016	33	2.0	33	97	0	125	29	25	5	38	1.80
93917340--93918187	56	15.1	56	99	0	1687	23	21	8	46	1.79
93924899--93925063	29	5.7	30	71	14	116	29	29	17	23	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284