Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  137  of  284  ( 34012 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45763461--45763544
26
3.2
26
65
26
68
55
8
14
21
1.64
45764586--45764689
53
2.0
53
96
0
190
22
16
6
54
1.65
45765090--45765177
46
1.9
46
85
0
122
32
15
23
27
1.95
45767047--45767598
47
11.6
47
90
3
843
34
8
28
28
1.87
45767047--45767598
96
5.8
96
94
1
959
34
8
28
28
1.87
45769851--45770447
143
4.2
143
86
1
802
29
20
22
27
1.98
45770097--45770312
44
4.7
44
69
12
153
29
22
22
26
1.99
45769670--45770447
286
2.8
286
82
5
854
29
21
21
27
1.98
45770857--45770891
14
2.4
15
90
4
54
60
28
0
11
1.32
45771937--45771972
17
2.1
18
89
5
56
27
5
0
66
1.13
45772064--45772340
24
11.3
24
69
15
151
28
5
4
61
1.37
45772015--45772256
46
5.2
44
73
19
170
28
4
4
61
1.35
45772035--45772254
98
2.3
92
82
7
253
28
4
5
61
1.36
45772148--45772219
28
2.6
29
72
20
71
27
4
6
61
1.41
45772304--45772357
25
2.2
25
83
6
65
33
7
3
55
1.45
45773892--45773943
25
2.0
26
81
3
61
36
13
9
40
1.77
45774047--45774096
12
4.1
12
72
23
50
48
0
2
50
1.12
45774052--45774092
21
2.0
21
85
4
57
46
0
2
51
1.14
45776622--45776661
21
1.9
21
100
0
80
37
25
10
27
1.88
45777755--45777792
17
2.2
17
100
0
76
26
23
15
34
1.95
45777755--45777799
17
2.6
17
92
0
63
28
22
15
33
1.95
45779676--45779737
31
2.0
31
93
0
106
32
25
22
19
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45785793--45785832
20
2.0
20
100
0
80
60
10
5
25
1.49
45792769--45792829
30
2.0
30
100
0
122
47
9
13
29
1.74
45793908--45793947
16
2.5
16
84
8
55
32
25
5
37
1.77
45797320--45797640
48
6.7
48
78
9
307
29
19
27
24
1.98
45798950--45798985
18
2.0
18
88
0
54
22
22
22
33
1.97
45801534--45801798
49
5.5
48
70
14
165
26
18
30
23
1.98
45801534--45801709
93
1.9
93
83
4
230
25
19
31
23
1.98
45802804--45802859
28
2.0
28
89
10
87
17
23
42
16
1.88
45802985--45803026
22
2.0
22
90
4
68
11
45
26
16
1.82
45804709--45804866
43
3.7
42
82
2
163
31
27
17
23
1.97
45839216--45839438
122
1.8
120
90
1
356
39
10
20
30
1.86
45841967--45842000
10
3.3
10
84
8
50
29
8
8
52
1.62
45848426--45848489
28
2.3
28
94
0
110
32
28
7
31
1.85
45857125--45857182
26
2.3
26
85
11
77
20
13
1
63
1.38
45866459--45866503
22
2.0
22
83
8
56
40
4
2
53
1.33
45870842--45870925
26
3.2
26
96
0
150
36
27
4
30
1.78
45884169--45884237
5
13.4
5
71
17
52
73
0
23
2
0.96
45884198--45884239
14
2.9
14
82
3
57
80
0
19
0
0.70
45885120--45885163
19
2.4
18
85
7
54
40
9
0
50
1.34
45889532--45889575
19
2.4
18
85
7
54
40
9
0
50
1.34
45892803--45892853
21
2.4
21
96
0
93
13
9
33
43
1.77
45905814--45905849
8
4.6
8
86
6
56
86
0
0
13
0.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45905814--45905849
16
2.3
15
95
4
63
86
0
0
13
0.58
45905813--45905849
7
5.0
7
87
12
56
83
0
0
16
0.64
45907093--45907124
14
2.4
13
90
10
55
18
6
12
62
1.50
45910799--45910859
25
2.4
25
71
10
61
44
8
14
32
1.75
45914362--45914491
45
2.9
45
90
2
192
22
21
30
26
1.99
45920110--45920176
34
2.0
34
96
0
125
25
20
25
28
1.99
45922414--45922543
45
2.9
45
88
2
183
23
21
29
26
1.99
45926096--45926142
18
2.7
18
83
3
60
21
25
34
19
1.96
45931707--45931784
38
2.1
38
100
0
156
35
8
10
44
1.70
45935003--45935048
19
2.3
19
85
11
56
82
6
10
0
0.83
45936013--45936065
26
2.1
25
82
6
63
33
5
1
58
1.32
45936210--45936325
28
4.2
27
68
11
74
49
0
0
50
1.06
45936239--45936313
38
1.9
39
84
12
102
44
0
1
54
1.08
45936579--45936607
2
14.5
2
100
0
58
48
0
0
51
1.00
45941502--45941584
18
4.8
18
71
24
79
50
3
2
43
1.32
45945316--45945369
27
2.0
27
100
0
108
37
22
7
33
1.82
45949259--45949297
19
2.1
19
95
0
69
53
5
15
25
1.62
45953312--45953345
17
2.0
17
94
0
59
29
5
8
55
1.54
45953941--45953977
7
5.3
7
86
0
56
24
43
16
16
1.87
45956215--45956480
131
2.0
132
86
2
374
25
19
19
34
1.96
45961458--45961525
29
2.3
30
80
7
77
61
2
2
32
1.26
45963459--45963610
31
5.0
31
74
10
127
53
0
1
43
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45963520--45963579
23
2.5
25
76
17
65
53
0
0
46
1.00
45963473--45963610
62
2.2
60
81
8
145
52
0
2
44
1.18
45965712--45965757
15
3.1
15
78
12
58
39
13
10
36
1.79
45967748--45967908
48
3.3
49
77
9
152
29
20
27
22
1.98
45967747--45967920
96
1.8
96
80
5
208
29
20
27
22
1.98
45971281--45971315
16
2.2
16
100
0
70
40
11
25
22
1.88
45984371--45984447
39
2.0
39
97
0
145
32
27
15
24
1.95
45985925--45985971
24
2.0
24
83
8
60
31
4
2
61
1.27
45988857--45988890
10
3.3
10
88
8
50
35
0
0
64
0.94
45989963--45991243
642
2.0
642
90
0
1990
32
12
13
40
1.83
46000198--46000227
14
2.1
15
93
6
53
30
6
30
33
1.83
46010827--46010911
42
2.0
42
95
0
152
21
20
30
28
1.98
46014467--46014557
19
4.8
18
74
20
71
58
3
2
36
1.27
46014481--46014534
28
1.9
28
96
0
99
55
1
3
38
1.28
46014487--46014555
28
2.4
29
83
9
81
59
4
2
33
1.32
46030971--46031072
11
9.5
11
70
10
59
67
3
6
21
1.31
46030972--46031053
33
2.5
33
85
2
101
65
4
7
21
1.37
46030993--46031070
33
2.4
34
80
6
88
66
3
7
21
1.33
46034312--46034349
18
2.2
18
85
4
51
34
5
10
50
1.59
46037472--46037509
19
2.0
19
85
10
51
44
0
15
39
1.47
46038053--46038089
13
2.6
15
87
12
60
78
0
18
2
0.87
46038052--46038107
15
3.8
15
77
15
55
73
5
19
1
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46038967--46039004
18
2.2
18
85
4
51
34
5
10
50
1.59
46042127--46042164
19
2.0
19
85
10
51
44
0
15
39
1.47
46042708--46042744
13
2.6
15
87
12
60
78
0
18
2
0.87
46042707--46042762
15
3.8
15
77
15
55
73
5
19
1
1.12
46043927--46043961
18
1.9
18
94
0
61
37
5
17
40
1.73
46048845--46048903
24
2.5
24
76
15
59
47
16
16
18
1.83
46053690--46053748
24
2.5
24
76
15
59
47
16
16
18
1.83
46056033--46056264
48
4.9
48
71
9
170
28
24
21
26
1.99
46067649--46067690
20
2.0
21
86
9
59
38
2
0
59
1.10
46067758--46067855
12
8.7
11
70
20
62
34
4
2
59
1.28
46067767--46067828
16
3.9
16
76
2
54
37
3
1
58
1.24
46067824--46067869
21
2.2
21
85
14
60
30
6
4
58
1.43
46067917--46067996
27
3.0
28
70
14
69
35
5
2
57
1.34
46068124--46068159
16
2.3
15
90
9
63
25
0
2
72
0.98
46068125--46068166
16
2.6
16
88
7
50
28
0
2
69
1.01
46068122--46068166
22
2.0
22
83
8
56
26
0
2
71
0.98
46074317--46074460
49
2.9
49
84
4
200
26
27
20
25
1.99
46074320--46074460
51
2.8
49
83
4
185
26
27
21
24
1.99
46074762--46074799
14
2.5
16
87
8
53
34
21
2
42
1.67
46082595--46082920
133
2.5
132
92
4
550
32
17
20
28
1.96
46084850--46084947
12
8.7
11
68
20
53
34
4
3
58
1.33
46085009--46085087
27
3.0
27
75
7
81
35
2
3
58
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46085213--46085252
11
3.4
12
86
13
57
20
0
2
77
0.88
46085213--46085244
16
2.0
16
100
0
64
18
0
0
81
0.70
46090301--46090465
86
1.9
86
90
2
260
33
18
9
39
1.82
46091590--46091807
40
5.5
40
93
2
327
25
27
23
23
2.00
46099249--46099343
40
2.4
40
91
3
147
27
26
24
22
2.00
46104627--46104846
40
5.6
40
82
4
259
25
20
26
27
1.99
46104627--46104846
80
2.8
81
86
5
290
25
20
26
27
1.99
46107536--46107806
48
5.6
48
82
4
305
22
27
20
29
1.99
46107544--46107806
144
1.8
144
90
0
427
22
26
20
30
1.98
46111093--46111241
48
3.1
48
91
0
235
29
24
20
26
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284