genome.fa.s9.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  143  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47972118--47972270	27	5.7	27	73	8	89	39	21	11	27	1.88
47972231--47972474	27	9.4	27	78	7	245	35	20	20	24	1.96
47972261--47972299	18	2.2	18	95	0	69	30	17	25	25	1.97
47972234--47972326	45	2.1	45	93	0	159	33	20	23	22	1.97
47972287--47972490	108	1.9	107	87	1	300	36	18	19	26	1.94
47972694--47972763	25	2.8	25	95	0	122	25	25	24	24	2.00
47974948--47975449	81	6.2	81	98	0	941	31	19	7	41	1.79
47975427--47976255	27	30.7	27	74	3	466	39	21	8	30	1.84
47976143--47976270	54	2.4	54	81	6	136	41	21	10	27	1.85
47975400--47976214	135	6.0	135	99	0	1621	39	21	8	30	1.84
47976258--47976706	27	17.0	27	88	4	677	34	20	20	24	1.97
47976288--47976326	18	2.2	18	100	0	78	30	20	25	23	1.98
47977590--47977765	56	3.1	56	92	0	307	46	9	22	22	1.80
47978894--47979076	79	2.3	81	84	7	232	24	22	27	25	2.00
47978895--47979078	40	4.6	40	83	9	216	23	22	28	25	2.00
47978947--47979111	79	2.1	79	84	6	210	25	21	27	25	1.99
47983091--47983115	12	2.1	12	100	0	50	52	24	16	8	1.70
47983065--47983139	39	1.9	39	91	0	123	41	22	17	18	1.90
47983103--47983296	27	7.2	27	85	0	253	36	20	20	23	1.95
47983103--47983296	81	2.4	81	86	0	289	36	20	20	23	1.95
47983435--47983493	27	2.2	26	82	5	73	22	20	20	37	1.95
47983979--47984123	37	3.9	37	93	0	236	22	19	31	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47985730--47985826	30	3.2	30	75	2	106	28	26	15	28	1.96
47989153--47989344	40	4.8	40	91	0	294	23	20	29	26	1.99
47993293--47993392	47	2.1	47	86	0	137	36	9	27	28	1.87
47993305--47993447	47	3.0	47	81	5	135	37	7	25	29	1.84
47994216--47994280	33	2.0	33	84	0	85	26	21	24	27	1.99
47994294--47994336	21	2.0	21	100	0	86	20	9	18	51	1.74
48009478--48009521	15	2.7	17	80	20	58	6	4	9	79	1.04
48010175--48010199	10	2.5	10	100	0	50	40	32	0	28	1.57
48010224--48010335	55	2.0	55	96	0	206	35	18	11	33	1.87
48014537--48014797	128	2.0	128	93	0	450	24	13	26	36	1.92
48024428--48024501	29	2.6	29	89	4	105	25	16	32	25	1.96
48027269--48027303	9	3.8	9	96	3	61	11	11	0	77	1.00
48030357--48030460	52	2.0	52	100	0	208	25	25	19	30	1.98
48034210--48034375	47	3.5	47	86	5	212	34	11	28	25	1.91
48034297--48034481	48	3.8	48	87	5	273	34	7	27	30	1.85
48034201--48034478	98	2.9	98	82	10	297	34	9	27	28	1.88
48034617--48034734	37	3.2	37	90	2	166	26	16	29	27	1.97
48034631--48034740	37	3.0	37	91	2	168	23	18	30	27	1.97
48038762--48038796	14	2.5	15	86	13	56	51	17	11	20	1.75
48038986--48039015	12	2.5	12	94	0	51	66	6	10	16	1.41
48040996--48041148	39	3.9	39	92	0	243	24	31	25	18	1.98
48058822--48058913	40	2.3	40	88	7	134	26	27	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48060577--48060743	40	4.2	40	81	6	180	23	22	27	25	2.00
48066227--48066402	40	4.5	40	83	8	202	23	23	28	24	2.00
48066228--48066402	79	2.2	78	83	7	203	24	22	28	24	1.99
48070010--48070910	40	22.5	40	98	0	1662	27	27	22	22	1.99
48074625--48074653	12	2.4	12	100	0	58	62	6	13	17	1.52
48077458--48077518	30	2.0	30	83	0	77	31	22	8	37	1.84
48078350--48078424	36	2.1	37	92	2	125	24	33	22	20	1.97
48078780--48078835	29	1.9	29	88	0	85	28	37	3	30	1.74
48081107--48081238	50	2.6	51	85	3	185	37	12	14	34	1.84
48081107--48081224	50	2.3	52	91	2	186	38	13	15	33	1.86
48087011--48087048	20	2.0	19	90	10	60	65	0	5	28	1.14
48088680--48088735	27	2.1	27	83	6	69	21	21	23	33	1.97
48091040--48091103	27	2.4	27	81	0	83	34	20	23	21	1.97
48094268--48094332	27	2.4	27	87	5	78	29	18	16	35	1.93
48095589--48095672	25	3.2	25	74	12	87	48	16	8	26	1.74
48097731--48097853	40	3.0	41	83	3	142	31	25	14	28	1.95
48097778--48097871	40	2.3	40	87	0	134	37	23	14	24	1.93
48100050--48100091	16	2.6	16	88	0	57	23	21	0	54	1.44
48100072--48100111	20	2.0	20	95	0	71	22	20	0	57	1.41
48103963--48103987	5	5.0	5	100	0	50	80	0	0	20	0.72
48105757--48105785	11	2.6	11	100	0	58	20	37	6	34	1.80
48106749--48106802	27	2.0	27	100	0	108	48	14	0	37	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48109046--48109170	26	4.7	26	75	10	85	41	20	9	28	1.84
48109046--48109223	53	3.3	53	81	6	155	41	19	9	30	1.83
48109046--48109225	27	6.7	27	81	4	195	40	19	9	30	1.83
48109216--48109618	27	15.0	27	84	0	495	36	18	19	25	1.95
48109842--48109924	27	3.1	26	86	5	112	20	21	20	37	1.95
48109975--48110165	98	1.9	98	89	2	294	21	17	26	34	1.96
48110189--48110263	27	2.8	26	78	13	64	17	22	20	40	1.92
48110222--48110287	27	2.4	27	85	5	80	22	25	16	34	1.95
48112435--48112512	41	1.9	39	84	5	102	37	15	10	37	1.81
48112552--48112626	39	1.9	39	94	0	132	45	13	9	32	1.75
48112557--48112637	39	2.1	39	90	0	126	46	14	9	28	1.77
48115663--48115695	15	2.2	15	94	0	57	66	15	0	18	1.25
48117501--48117535	10	3.5	10	96	0	61	2	14	0	82	0.77
48119462--48119486	12	2.1	12	100	0	50	48	16	8	28	1.74
48121472--48121532	30	2.0	30	83	0	77	31	22	8	37	1.84
48123581--48123756	92	1.9	93	83	4	230	24	27	19	28	1.98
48124094--48124152	30	2.0	30	89	0	91	28	22	13	35	1.92
48127628--48127795	84	2.0	84	95	0	300	41	12	11	34	1.79
48135481--48135536	28	2.0	28	100	0	112	32	10	21	35	1.88
48136905--48137048	47	3.1	47	83	2	191	32	9	31	26	1.89
48137167--48137245	37	2.1	37	88	4	115	25	18	30	25	1.98
48141817--48141973	40	3.9	40	89	0	242	23	28	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48141821--48141973	80	1.9	80	94	0	270	23	27	21	27	1.99
48150859--48151028	43	4.0	42	78	9	164	32	28	16	22	1.96
48151510--48151548	10	3.9	10	100	0	78	38	20	10	30	1.86
48152174--48152202	14	2.0	15	93	6	51	51	20	0	27	1.47
48157940--48157972	17	2.0	17	94	5	59	36	15	0	48	1.45
48158258--48158761	46	11.0	46	91	0	731	22	23	14	39	1.91
48161573--48161626	27	2.0	29	85	10	78	44	18	5	31	1.73
48162633--48162693	27	2.3	27	100	0	122	32	16	22	27	1.96
48165992--48166026	13	2.6	14	86	9	54	62	11	0	25	1.28
48169972--48170041	27	2.6	27	88	4	97	37	20	8	34	1.83
48169994--48170098	27	3.9	26	78	9	95	36	19	13	31	1.90
48182783--48182814	14	2.4	13	90	10	55	18	6	12	62	1.50
48186032--48186066	13	2.6	14	86	9	54	62	11	0	25	1.28
48187308--48187435	43	3.0	43	74	13	120	30	27	17	25	1.97
48192156--48193375	47	26.0	47	90	0	1855	31	11	29	26	1.92
48192369--48192491	22	5.3	22	63	30	60	30	13	31	25	1.93
48192155--48193375	141	8.7	141	95	0	2055	31	11	29	26	1.92
48193538--48193652	37	3.1	37	91	0	167	21	20	32	25	1.98
48196440--48196623	50	3.7	50	82	1	181	26	17	26	29	1.98
48198772--48198994	40	5.6	39	84	4	225	26	28	20	24	1.99
48198772--48198994	120	1.9	119	81	6	272	26	28	20	24	1.99
48206047--48206218	40	4.3	40	88	2	222	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48209400--48209528	46	2.8	47	81	2	161	22	13	28	34	1.93
48212338--48212445	37	3.0	35	87	6	144	26	31	18	23	1.97
48212589--48213193	47	12.9	46	92	4	153	24	29	12	34	1.91
48212653--48213219	47	12.1	47	97	0	999	24	29	12	34	1.91
48213119--48213193	22	3.3	22	64	29	57	25	30	13	30	1.94
48217101--48217292	40	4.8	40	93	0	312	24	29	22	23	1.99
48218084--48218153	35	2.0	35	97	0	131	60	10	14	15	1.59
48224584--48224758	46	3.8	46	96	0	314	20	21	29	29	1.98
48226693--48226811	46	2.6	46	87	0	166	26	29	9	34	1.88
48226785--48227019	94	2.5	94	95	0	416	29	27	10	32	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284