genome.fa.s9.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  136  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45344785--45344991	43	4.8	43	79	9	172	24	17	25	32	1.97
45351656--45351695	21	2.0	20	85	5	53	45	7	22	25	1.78
45351911--45352034	61	2.1	57	80	15	128	41	0	2	54	1.19
45351931--45352034	20	5.2	20	79	15	101	43	0	2	52	1.22
45365674--45365732	24	2.4	25	77	5	66	42	18	22	16	1.89
45365787--45365851	26	2.5	26	82	12	80	32	21	23	23	1.98
45365782--45365851	27	2.7	26	82	8	81	32	20	25	21	1.97
45365890--45365958	24	3.0	22	70	19	59	31	20	30	17	1.95
45377682--45377735	23	2.3	23	84	6	65	22	24	18	35	1.96
45379470--45379501	12	2.6	13	90	9	50	15	40	15	28	1.88
45381346--45381567	40	5.5	40	80	7	166	29	13	24	31	1.94
45381408--45381567	81	2.0	83	82	7	202	28	15	25	31	1.95
45390370--45390433	33	1.9	33	96	0	119	35	25	15	23	1.94
45406628--45406663	6	5.8	6	93	6	63	13	0	2	83	0.76
45412511--45412693	101	1.8	101	88	3	280	28	25	19	26	1.99
45418671--45418833	55	3.0	55	75	7	143	17	26	28	26	1.97
45428039--45428298	101	2.6	101	89	0	396	28	23	19	28	1.98
45427988--45428365	51	7.6	50	72	12	246	30	24	17	27	1.97
45431740--45432215	238	2.0	239	97	0	891	39	10	19	31	1.84
45432583--45433365	47	16.7	47	96	2	1452	23	19	29	27	1.98
45433244--45433419	46	3.8	46	79	12	207	21	21	28	28	1.99
45437364--45437399	16	2.2	16	100	0	72	11	38	13	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45448464--45448612	42	3.6	41	79	3	154	28	27	15	28	1.96
45451352--45451421	31	2.2	31	92	2	113	32	21	18	27	1.97
45456258--45456406	42	3.6	41	77	3	136	30	26	14	29	1.95
45464410--45464436	13	2.1	13	100	0	54	14	33	37	14	1.88
45473115--45473380	103	2.6	104	90	3	419	19	20	29	29	1.97
45479402--45479435	6	5.5	6	86	6	50	17	0	2	79	0.86
45479393--45479435	12	3.5	13	84	9	54	20	0	2	76	0.89
45487723--45487918	40	4.9	40	85	5	261	18	17	27	36	1.93
45487716--45487940	40	5.6	40	79	8	224	19	18	26	35	1.95
45487722--45487918	80	2.5	80	88	1	288	18	17	27	36	1.93
45487723--45487940	120	1.8	120	84	5	298	19	18	27	34	1.95
45496555--45496786	48	4.9	48	71	13	196	26	19	25	28	1.99
45501070--45501164	31	3.2	31	65	17	74	41	3	41	14	1.62
45501058--45501169	58	1.9	58	96	0	206	39	2	41	16	1.62
45501070--45501193	58	2.1	58	82	5	144	45	2	38	13	1.57
45502210--45502529	141	2.3	141	83	5	389	31	20	10	36	1.87
45502256--45502532	141	2.0	141	87	4	398	31	20	10	37	1.87
45502428--45502683	123	2.1	123	84	6	324	31	21	10	35	1.88
45503500--45503662	89	1.8	89	95	0	299	33	12	17	36	1.87
45507582--45507611	15	2.0	15	93	0	51	6	23	20	50	1.71
45508697--45508733	19	1.9	19	94	0	65	32	18	16	32	1.93
45510345--45510379	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45510345--45510399	15	3.4	16	80	16	53	47	0	1	50	1.11
45510615--45510682	16	4.2	16	96	0	127	38	35	0	26	1.57
45514724--45514771	23	2.1	23	96	0	87	31	18	8	41	1.80
45518400--45518534	50	2.7	50	83	2	182	39	22	14	23	1.91
45526586--45526624	18	2.2	18	90	0	60	30	46	5	17	1.70
45530365--45530394	15	2.0	15	93	0	51	40	3	6	50	1.45
45531508--45531545	18	2.1	18	100	0	76	44	0	0	55	0.99
45538350--45538419	28	2.6	27	86	2	86	28	20	28	22	1.98
45538295--45538446	55	2.8	53	81	4	178	28	16	27	26	1.97
45538296--45538451	27	5.7	27	78	6	145	28	16	28	27	1.97
45540444--45540770	48	6.8	48	81	0	332	28	26	16	28	1.97
45546261--45546464	92	2.2	91	81	6	261	31	19	19	29	1.96
45549984--45550040	23	2.4	24	82	8	71	21	21	17	40	1.92
45552589--45552614	9	2.9	9	100	0	52	11	0	23	65	1.25
45553314--45553444	50	2.7	49	80	4	140	26	19	25	29	1.98
45553314--45553491	98	1.8	98	80	4	216	25	18	26	29	1.98
45558065--45558130	31	2.1	31	100	0	132	33	13	18	34	1.90
45564290--45564467	48	3.7	48	76	8	146	27	20	24	27	1.99
45568180--45568319	53	2.6	53	88	2	201	28	27	18	25	1.98
45580292--45580504	46	4.6	47	81	5	200	23	30	17	28	1.97
45580340--45580537	46	4.2	46	81	10	179	24	30	18	27	1.98
45588179--45588257	29	2.7	29	86	5	106	27	32	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45588239--45588341	43	2.4	43	100	0	206	26	35	15	22	1.94
45614126--45614157	5	6.4	5	100	0	64	43	18	0	37	1.51
45616117--45616171	12	4.6	12	76	0	56	40	14	20	25	1.90
45622660--45622695	18	2.0	18	100	0	72	33	16	5	44	1.71
45623086--45623168	35	2.4	35	81	4	96	30	20	22	26	1.98
45634434--45634612	26	6.9	26	76	8	141	31	27	13	27	1.94
45635906--45635959	26	2.1	25	82	3	63	44	18	9	27	1.80
45637236--45637274	3	13.3	3	94	5	71	30	0	0	69	0.89
45643127--45643301	44	3.7	46	73	11	142	21	29	21	28	1.98
45643135--45643438	47	6.5	46	72	10	190	24	29	19	27	1.98
45643269--45643441	46	3.7	46	77	6	152	26	30	17	26	1.98
45643269--45643441	94	1.9	92	88	2	265	26	30	17	26	1.98
45649405--45649554	64	2.2	65	81	8	167	32	18	28	21	1.96
45649429--45649612	67	2.8	64	80	8	212	29	17	29	22	1.97
45654578--45654760	79	2.3	81	83	7	223	24	22	27	24	2.00
45654579--45654762	40	4.6	40	82	9	207	24	22	28	24	2.00
45654631--45654795	79	2.1	79	83	6	201	26	21	27	24	1.99
45665102--45665360	47	5.6	46	71	8	179	24	28	19	27	1.99
45666076--45666100	12	2.1	12	100	0	50	60	16	8	16	1.58
45666777--45666837	13	4.7	13	85	0	59	45	4	19	29	1.71
45666778--45666837	26	2.3	26	82	5	68	45	5	20	30	1.72
45666791--45666844	26	2.1	26	89	6	83	40	3	20	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45671893--45672112	122	1.8	121	84	2	298	42	10	18	28	1.83
45679347--45679396	17	3.3	15	74	20	50	18	40	32	10	1.83
45679349--45679383	17	2.2	15	90	10	52	20	40	31	8	1.82
45679567--45679646	21	3.8	21	84	0	88	20	30	20	30	1.97
45679559--45679676	21	5.6	21	77	7	78	21	30	21	27	1.98
45681668--45681733	30	2.1	31	81	15	75	39	10	6	43	1.64
45682728--45682782	28	1.9	29	82	17	71	47	5	5	41	1.49
45691196--45691227	3	10.7	3	100	0	64	65	0	0	34	0.93
45693613--45693739	43	3.0	43	76	7	134	31	23	18	26	1.97
45698155--45698361	94	2.2	94	79	5	213	31	20	23	23	1.98
45698389--45698514	49	2.6	49	82	3	146	28	21	27	22	1.99
45699656--45699695	21	2.0	21	90	5	64	15	37	25	22	1.93
45703903--45704142	100	2.4	100	96	0	446	27	27	20	25	1.99
45703903--45704145	51	4.9	47	80	6	270	27	27	19	25	1.99
45712025--45712070	16	2.9	16	83	6	58	60	0	0	39	0.97
45712198--45712225	5	5.6	5	100	0	56	60	0	0	39	0.97
45712346--45713133	250	3.3	230	78	11	807	44	7	11	37	1.67
45713824--45713867	16	2.9	15	80	6	52	56	4	0	38	1.20
45717567--45717697	23	5.5	23	77	9	95	36	25	23	14	1.93
45718259--45718301	5	8.4	5	79	5	50	4	25	0	69	1.07
45719779--45719893	45	2.6	43	80	8	133	53	2	17	26	1.57
45728450--45728500	21	2.5	20	78	9	57	17	15	27	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45730232--45730370	49	2.8	49	83	0	179	28	20	26	23	1.99
45730940--45730965	12	2.2	12	100	0	52	38	7	26	26	1.83
45742086--45742255	51	3.4	50	80	3	189	31	10	19	38	1.85
45744882--45744925	23	1.9	23	86	9	63	38	18	6	36	1.77
45745829--45745885	28	2.0	28	100	0	114	38	17	7	36	1.77
45760467--45760724	25	10.3	25	72	14	124	62	4	6	27	1.38
45760598--45760754	24	6.4	24	72	19	110	60	3	5	29	1.38
45760575--45760722	47	3.1	46	75	12	122	62	4	5	28	1.36
45760670--45760789	43	2.9	39	71	14	98	64	2	4	29	1.25
45762951--45763061	46	2.4	46	76	5	125	21	23	16	38	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284