genome.fa.s9.2.7.7.80.10.50.1000.274.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  274  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91983072--91983431	181	2.0	181	97	1	686	37	23	17	21	1.94
91983557--91983672	60	1.9	60	89	0	178	24	31	21	22	1.98
91987207--91987287	27	3.0	27	74	3	83	37	20	18	23	1.94
91987266--91987322	27	2.1	27	83	0	69	21	21	19	38	1.93
91987939--91988206	100	2.7	100	94	1	457	22	23	20	34	1.96
91991867--91992044	27	6.6	27	83	3	205	26	15	28	29	1.96
91991868--91992023	82	1.9	81	88	3	233	26	15	28	29	1.96
91991864--91992044	82	2.2	81	83	2	229	27	15	27	29	1.96
91996551--91996730	79	2.3	80	81	7	215	24	27	23	25	2.00
91996547--91996730	40	4.6	40	80	8	214	25	26	22	25	2.00
92010589--92010739	75	2.0	75	98	0	293	43	15	25	15	1.86
92011197--92011247	25	2.0	25	81	7	59	13	33	0	52	1.41
92018694--92018799	42	2.5	42	89	3	151	28	26	16	29	1.96
92019611--92019639	12	2.3	13	94	5	51	20	6	13	58	1.58
92033709--92033826	43	2.8	42	78	8	130	27	28	17	26	1.98
92033797--92034207	95	4.3	95	94	0	680	29	27	16	25	1.97
92033798--92034207	48	8.6	48	84	4	544	30	27	16	25	1.97
92046515--92046616	51	2.0	51	92	3	170	29	16	27	26	1.97
92047340--92047423	40	2.1	40	97	0	159	52	16	21	9	1.72
92049889--92049990	50	2.0	50	94	0	177	39	13	15	31	1.87
92054799--92054877	37	2.1	37	88	4	115	25	30	18	25	1.98
92054998--92055137	47	2.9	49	86	6	198	27	31	10	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92058367--92058549	40	4.6	40	77	6	158	25	26	21	26	2.00
92058367--92058546	80	2.2	81	80	5	188	25	27	21	26	1.99
92058859--92058937	29	2.7	29	86	5	106	27	32	15	24	1.95
92058919--92059021	43	2.4	43	98	0	197	26	34	15	23	1.94
92070204--92070621	40	10.5	40	97	1	761	26	27	22	22	1.99
92079103--92079286	79	2.3	81	82	11	222	25	27	22	25	2.00
92079103--92079286	40	4.6	41	83	12	199	25	27	22	25	2.00
92087041--92087302	39	6.7	40	88	7	337	24	27	22	25	2.00
92091445--92091514	35	2.0	35	97	0	131	32	14	15	37	1.88
92097088--92097306	27	8.1	27	85	0	276	32	18	21	27	1.97
92097448--92097526	27	2.9	27	84	0	104	22	20	18	37	1.94
92099766--92099895	40	3.3	40	78	1	118	37	15	18	28	1.91
92101786--92101845	22	2.7	23	73	19	63	66	6	0	26	1.16
92101795--92101828	4	8.0	4	90	9	50	73	2	0	23	0.97
92103182--92103234	23	2.4	22	76	20	56	9	18	1	69	1.25
92106434--92106519	43	2.0	43	88	0	127	33	10	11	44	1.75
92107246--92107328	42	2.0	43	90	2	132	25	16	28	28	1.97
92111821--92111887	21	3.5	20	71	20	63	32	1	1	64	1.12
92111819--92111853	16	2.1	18	89	10	56	31	0	5	62	1.18
92111825--92111982	26	6.0	26	67	19	71	32	4	1	62	1.23
92111830--92111980	23	6.0	24	70	17	76	32	4	1	61	1.25
92112137--92112180	22	2.0	22	83	12	56	29	6	6	56	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92124055--92124604	206	2.7	206	90	2	836	31	18	21	29	1.97
92126334--92126400	25	2.7	26	82	13	72	31	4	1	62	1.24
92126345--92126388	23	2.0	21	83	16	54	31	2	0	65	1.05
92126345--92126463	25	4.8	25	67	20	72	33	6	0	59	1.24
92126343--92126392	5	10.0	5	75	16	50	34	2	0	64	1.05
92126447--92126518	24	2.8	26	74	16	71	31	4	0	63	1.13
92126447--92126541	26	3.7	26	71	16	65	34	5	0	60	1.20
92126484--92126561	43	1.9	41	84	10	106	34	5	0	60	1.19
92126717--92126760	22	2.0	22	87	12	65	31	4	6	56	1.46
92131043--92131286	40	6.1	40	92	1	384	25	21	27	26	1.99
92137354--92137613	45	5.9	43	85	6	244	25	28	21	25	1.99
92137395--92137613	45	4.9	45	90	2	320	25	28	22	23	2.00
92147563--92147626	26	2.4	26	84	5	74	32	25	12	29	1.92
92147735--92147835	27	3.7	26	79	7	103	18	24	19	36	1.95
92152248--92152287	20	2.0	20	85	0	53	30	0	20	50	1.49
92154071--92154095	12	2.1	12	100	0	50	24	40	28	8	1.83
92157311--92157729	27	15.7	26	81	7	416	30	8	20	40	1.82
92157311--92157729	54	7.8	54	80	7	462	30	8	20	40	1.82
92161337--92161374	18	2.1	18	100	0	76	39	5	18	36	1.73
92167457--92167486	14	2.1	14	100	0	60	36	13	0	50	1.42
92170535--92170768	117	2.0	117	92	0	387	27	28	20	23	1.99
92173364--92173404	7	5.9	7	100	0	82	29	29	0	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92182030--92183757	878	2.0	878	93	0	2992	31	22	13	32	1.92
92188210--92188275	28	2.3	29	82	7	82	22	13	34	28	1.92
92188230--92188291	28	2.2	28	82	2	70	29	11	33	25	1.91
92188886--92188930	23	2.0	23	90	0	72	17	4	51	26	1.65
92204235--92204353	22	5.1	22	62	28	59	31	13	30	24	1.93
92204206--92204357	47	3.2	47	94	0	250	32	10	29	26	1.90
92205586--92205730	29	4.8	29	68	22	91	45	20	11	23	1.82
92205551--92205735	93	2.0	93	96	0	343	44	20	10	23	1.83
92207422--92207455	17	2.0	17	100	0	68	41	5	11	41	1.66
92210881--92210925	20	2.4	18	85	10	63	26	0	2	71	0.98
92211618--92211673	26	2.2	26	93	0	94	33	7	23	35	1.82
92225315--92225390	36	2.1	36	95	0	134	18	13	28	39	1.88
92231293--92231340	20	2.5	19	77	16	53	54	0	4	41	1.20
92239445--92239498	26	2.1	26	100	0	108	18	18	11	51	1.74
92243217--92243696	27	17.6	27	97	1	852	25	14	29	30	1.95
92243217--92243696	82	5.9	82	96	1	874	25	14	29	30	1.95
92261467--92261509	16	2.7	16	92	0	68	11	18	16	53	1.72
92264190--92264249	30	2.0	30	90	0	93	30	25	8	36	1.85
92266869--92266896	13	2.2	13	100	0	56	21	42	14	21	1.88
92270956--92270988	16	2.1	16	100	0	66	42	24	6	27	1.78
92271682--92271752	28	2.5	28	84	4	81	23	33	19	22	1.97
92273811--92274290	27	17.6	27	97	1	852	25	14	29	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92273811--92274290	82	5.9	82	96	1	874	25	14	29	30	1.95
92284614--92285301	344	2.0	344	97	0	1306	37	17	25	20	1.93
92285867--92285904	16	2.3	16	90	4	58	13	2	31	52	1.54
92294977--92295009	17	1.9	17	93	0	57	78	3	3	15	0.99
92296923--92297115	106	1.8	106	83	6	257	49	11	6	32	1.65
92297161--92297195	18	1.9	18	88	0	52	74	8	0	17	1.06
92297281--92297312	15	2.1	15	94	0	55	75	0	3	21	0.95
92297363--92297424	19	3.4	18	75	12	65	54	4	1	38	1.31
92297561--92297620	12	4.8	14	75	24	55	63	0	1	35	1.05
92297545--92297614	18	3.9	18	85	10	90	62	0	2	34	1.10
92297561--92297665	18	5.7	19	79	19	100	61	2	1	33	1.21
92297689--92297731	18	2.4	18	84	3	52	65	0	0	34	0.93
92299271--92300244	44	22.1	44	84	3	1172	26	27	14	31	1.95
92299271--92300234	88	10.9	88	89	2	1303	26	27	14	31	1.95
92308400--92308430	15	2.1	15	93	0	53	54	22	6	16	1.64
92314247--92314582	87	3.8	88	77	7	299	35	12	10	42	1.76
92330536--92330595	17	3.3	18	79	6	68	18	6	1	73	1.14
92332794--92332891	49	2.0	49	91	0	160	31	23	15	29	1.95
92333574--92333598	13	1.9	13	100	0	50	44	0	8	48	1.32
92347730--92347786	27	2.1	27	100	0	114	59	10	0	29	1.31
92348342--92348378	19	1.9	19	94	0	65	27	27	0	45	1.54
92354455--92354569	33	3.5	33	90	0	185	31	20	18	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92354455--92354583	33	3.9	32	80	9	143	30	19	19	31	1.96
92362158--92362259	42	2.5	40	76	19	102	35	5	0	57	1.29
92362207--92362265	21	2.7	22	76	23	63	30	3	3	62	1.28
92362542--92362578	15	2.4	16	86	8	51	27	0	5	67	1.12
92374348--92375416	44	24.3	44	86	0	1440	31	13	24	30	1.94
92376914--92376957	15	2.8	15	78	21	54	38	2	0	59	1.10
92376914--92377004	30	3.2	29	73	15	75	36	6	1	56	1.33
92376925--92377026	42	2.5	39	75	21	93	34	5	1	57	1.34
92376974--92377033	21	2.8	22	76	23	65	31	3	3	61	1.28
92377309--92377346	16	2.4	16	86	4	51	26	0	5	68	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284