genome.fa.s9.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  157  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52550836--52550896	30	2.0	30	87	0	86	29	24	9	36	1.88
52556010--52556142	51	2.6	51	86	2	189	26	18	25	29	1.98
52565921--52565986	33	2.0	33	96	0	123	30	31	9	28	1.88
52566997--52567063	34	2.0	34	96	0	125	25	20	11	41	1.87
52569688--52569721	15	2.2	16	89	5	52	14	5	17	61	1.52
52572500--52572639	50	2.8	51	80	5	178	27	17	25	29	1.98
52574221--52574279	18	3.7	18	63	32	53	25	27	13	33	1.93
52581275--52581316	17	2.5	17	96	0	75	16	26	35	21	1.94
52588061--52588093	14	2.3	15	94	5	59	27	0	18	54	1.44
52589217--52589324	45	2.5	43	80	8	121	24	17	26	31	1.97
52606441--52606555	43	2.7	43	87	4	153	22	19	27	30	1.98
52619223--52619325	43	2.4	43	75	4	102	26	23	20	30	1.99
52622741--52622777	19	1.9	19	88	0	56	51	2	13	32	1.55
52625352--52625412	31	2.0	31	100	0	122	36	34	3	26	1.73
52625576--52625694	49	2.4	49	83	4	141	23	28	18	29	1.98
52625718--52625840	48	2.6	48	83	5	158	26	26	18	28	1.98
52625576--52625837	141	1.9	143	80	10	315	25	27	17	28	1.98
52625749--52625851	48	2.1	48	82	3	127	30	27	16	26	1.97
52626786--52626884	33	3.2	33	62	24	88	25	22	20	32	1.98
52626771--52626888	59	2.0	59	98	0	227	27	19	20	32	1.97
52641748--52641832	39	2.2	39	82	2	107	25	32	21	20	1.97
52641761--52641837	39	2.0	39	89	0	118	27	31	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52644146--52644185	20	2.0	20	85	5	53	32	7	0	60	1.25
52650034--52650256	46	4.8	48	75	7	179	24	26	19	29	1.99
52650034--52650244	48	4.5	46	76	10	169	23	27	20	29	1.99
52650034--52650247	93	2.3	93	82	4	252	23	27	20	28	1.99
52665022--52665070	22	2.2	22	85	7	64	44	2	12	40	1.53
52665347--52665389	22	1.9	23	85	4	61	44	0	9	46	1.35
52669325--52669496	43	4.0	43	72	13	165	25	17	26	30	1.97
52671815--52671981	52	3.3	51	88	5	241	28	29	13	28	1.94
52680395--52680514	43	2.8	43	87	2	170	25	30	22	22	1.99
52687273--52687304	7	4.6	7	92	0	55	31	12	40	15	1.85
52688268--52688313	20	2.2	22	85	11	62	17	4	2	76	1.06
52706237--52706553	49	6.5	49	78	6	306	24	26	20	28	1.99
52706184--52706501	146	2.2	146	88	0	458	25	26	19	27	1.99
52706184--52706649	146	3.2	146	82	4	450	25	27	19	28	1.99
52706482--52706691	46	4.5	46	80	5	235	23	28	18	29	1.98
52706527--52706737	92	2.3	92	100	0	422	24	28	18	29	1.98
52706424--52706739	138	2.2	140	79	7	327	22	28	20	28	1.99
52706527--52706739	46	4.6	46	80	6	236	23	28	18	29	1.98
52707072--52707152	29	2.7	30	79	7	94	34	25	8	30	1.86
52712403--52712549	43	3.4	42	82	4	152	31	26	17	23	1.97
52717008--52717045	19	2.0	19	100	0	76	21	26	15	36	1.93
52728548--52728577	13	2.2	14	94	5	53	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52731848--52732375	267	2.0	268	87	2	776	32	20	10	36	1.87
52735337--52735371	1	35.0	1	100	0	70	100	0	0	0	0.00
52739146--52739305	41	3.9	41	76	9	157	22	21	28	27	1.99
52742463--52742735	87	3.1	88	74	7	241	32	21	11	34	1.89
52745804--52745931	47	2.7	47	83	9	172	28	18	31	21	1.97
52745813--52746217	48	8.5	47	72	14	194	29	19	27	23	1.98
52745950--52746209	140	1.8	142	90	1	416	29	19	26	24	1.98
52748320--52748354	18	2.1	17	89	10	54	51	2	14	31	1.57
52749509--52749655	31	4.7	31	87	0	195	27	19	25	27	1.99
52749673--52749845	47	3.7	46	83	3	166	29	15	24	30	1.96
52756790--52757157	141	2.6	140	85	3	490	29	17	28	24	1.98
52756926--52757147	49	4.7	46	71	19	154	29	17	28	24	1.97
52761439--52761597	87	1.8	87	93	0	273	18	8	24	48	1.75
52773233--52773376	71	2.0	72	95	1	263	37	6	11	43	1.68
52781485--52781569	41	2.1	41	97	0	161	27	23	9	40	1.85
52797512--52797545	18	1.9	18	88	5	52	23	0	23	52	1.47
52797655--52797783	67	1.9	68	82	6	163	37	19	21	21	1.95
52799160--52799212	25	2.1	25	85	0	70	33	16	9	39	1.81
52799221--52799409	75	2.5	75	88	0	270	41	10	16	32	1.81
52802325--52802401	26	3.0	26	92	3	120	42	24	14	18	1.87
52810444--52810471	9	3.1	9	100	0	56	75	0	25	0	0.81
52810952--52811014	22	2.6	24	76	19	69	19	19	17	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52815092--52815356	40	6.7	40	79	9	267	23	20	28	27	1.99
52815093--52815356	79	3.3	79	86	4	318	23	20	28	27	1.99
52820398--52820508	55	2.0	55	94	0	195	63	4	20	11	1.45
52821544--52821624	22	3.5	22	81	5	90	18	23	16	41	1.89
52822700--52822778	23	3.4	23	92	0	131	43	21	17	17	1.89
52824170--52824209	21	1.9	21	100	0	80	45	10	5	40	1.60
52827319--52827543	40	5.6	40	83	5	258	25	24	27	23	2.00
52827319--52827579	80	3.3	80	83	3	312	25	24	26	23	2.00
52827319--52827579	120	2.2	120	83	6	325	25	24	26	23	2.00
52835854--52836263	204	2.0	205	97	0	768	36	16	19	27	1.93
52839811--52839983	49	3.6	49	77	12	173	25	29	18	26	1.98
52843855--52843944	44	2.0	46	89	4	139	50	3	4	42	1.39
52849027--52849292	103	2.6	104	88	3	401	20	20	29	29	1.98
52850868--52850892	13	1.9	13	100	0	50	36	8	8	48	1.62
52850994--52851498	108	4.7	108	79	6	420	29	23	11	36	1.89
52850991--52851410	162	2.6	160	80	6	470	28	22	10	37	1.88
52851056--52851498	54	8.3	53	78	5	270	29	23	11	35	1.89
52851538--52851645	47	2.3	46	79	9	119	28	19	13	37	1.90
52852037--52852102	33	2.0	33	96	0	123	43	15	19	21	1.87
52854298--52854363	25	2.6	24	74	11	60	54	3	7	34	1.44
52856234--52856485	44	5.8	44	70	14	216	17	23	22	36	1.94
52856361--52856493	43	3.0	45	70	12	130	18	22	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52856237--52856493	86	2.9	89	86	3	344	18	22	21	36	1.95
52868725--52868790	25	2.6	24	74	11	60	54	3	7	34	1.44
52870824--52870869	24	2.0	22	83	8	56	54	0	6	39	1.26
52871792--52871825	17	2.0	17	88	0	50	47	0	0	52	1.00
52873896--52873929	13	2.7	13	95	4	61	64	0	0	35	0.94
52879413--52879486	38	1.9	38	97	0	139	32	17	28	21	1.96
52881680--52881855	46	3.8	46	77	4	174	30	19	28	21	1.98
52885441--52885618	27	6.6	27	84	3	205	29	28	15	26	1.96
52885462--52885617	82	1.9	81	88	3	233	29	28	15	26	1.96
52891729--52891911	79	2.3	81	82	9	216	24	27	22	25	2.00
52891727--52891911	40	4.7	40	78	12	202	24	27	22	24	2.00
52900859--52901043	79	2.3	82	83	7	229	24	27	22	24	2.00
52900840--52901043	40	5.1	40	81	8	229	24	27	22	25	2.00
52903961--52904088	63	2.0	63	93	0	220	39	15	26	17	1.90
52904522--52904639	59	2.0	59	98	0	227	33	11	30	25	1.90
52906471--52906500	14	2.1	15	93	6	53	56	13	10	20	1.65
52908638--52908691	24	2.2	24	93	0	90	18	20	40	20	1.91
52910233--52910345	57	2.0	56	96	0	199	33	14	14	37	1.86
52916554--52916644	45	2.0	45	84	0	119	25	12	24	38	1.90
52919333--52919371	21	1.9	20	89	5	60	33	0	20	46	1.51
52919620--52919692	36	2.0	36	97	0	137	46	0	15	38	1.46
52921738--52921777	19	2.1	19	90	0	62	30	0	45	25	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52922214--52922248	19	1.9	19	88	11	56	42	0	2	54	1.15
52922262--52922300	18	2.2	18	90	9	62	71	0	7	20	1.10
52927087--52927111	7	3.6	7	100	0	50	72	0	16	12	1.13
52933728--52933756	14	2.0	15	93	6	51	31	0	0	68	0.89
52940128--52940253	57	2.2	57	85	4	173	50	6	16	26	1.69
52940415--52940466	28	1.9	26	85	14	70	44	0	13	42	1.44
52941542--52941576	15	2.4	15	90	4	54	31	0	2	65	1.07
52947839--52947947	42	2.6	42	78	5	121	44	18	20	17	1.88
52948402--52948430	9	3.2	9	100	0	58	34	24	0	41	1.55
52952289--52952336	20	2.4	20	100	0	96	50	14	4	31	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284