genome.fa.s9.2.7.7.80.10.50.1000.269.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  269  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90394589--90394750	79	2.1	79	81	9	188	27	20	27	25	1.99
90395378--90395580	101	2.0	101	99	0	397	41	14	22	21	1.89
90395940--90396071	65	2.0	64	97	1	246	30	18	28	21	1.97
90402747--90402930	40	4.6	41	81	12	208	25	22	27	25	2.00
90402747--90402930	79	2.3	81	82	11	222	25	22	27	25	2.00
90402799--90402963	79	2.1	79	82	8	194	26	21	27	24	1.99
90411319--90411360	22	2.0	22	90	4	68	47	0	45	7	1.30
90412946--90413080	68	2.0	68	98	0	261	44	13	17	25	1.84
90413470--90413587	37	3.2	37	92	2	184	25	29	18	26	1.98
90413815--90413960	48	3.0	47	82	9	186	31	26	7	34	1.84
90413786--90414054	47	5.5	50	80	13	224	28	27	10	34	1.89
90417232--90417296	23	2.8	23	80	0	76	24	27	13	33	1.93
90417702--90417742	21	2.0	21	85	0	55	43	0	4	51	1.23
90417729--90417794	17	4.0	16	82	9	71	24	1	0	74	0.91
90417742--90417796	15	3.5	15	85	9	65	23	1	0	74	0.91
90420393--90420453	30	2.1	29	87	3	86	44	14	11	29	1.81
90423316--90423474	43	3.7	44	72	11	112	39	18	17	23	1.92
90425811--90425888	23	3.2	24	81	3	86	14	23	21	41	1.89
90425833--90425888	24	2.3	24	81	3	67	14	25	21	39	1.91
90428672--90428704	16	1.9	18	88	11	52	51	0	0	48	1.00
90428715--90428758	17	2.5	17	81	3	52	25	9	0	65	1.21
90428855--90428884	14	2.1	14	100	0	60	36	6	0	56	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90429706--90429778	13	5.0	14	71	19	51	41	2	1	54	1.23
90429691--90429767	32	2.4	32	79	16	88	42	1	1	54	1.16
90429705--90429765	23	2.7	22	80	14	70	42	1	1	54	1.20
90429739--90429777	13	3.0	13	85	10	53	38	0	0	61	0.96
90432507--90432589	25	3.4	25	77	8	64	32	19	21	26	1.97
90433230--90433368	54	2.5	54	80	8	145	30	20	16	31	1.95
90433485--90433760	112	2.4	117	81	7	327	34	17	17	30	1.93
90433601--90433829	59	3.9	58	77	12	209	33	17	17	31	1.94
90433556--90433846	54	5.2	53	76	16	241	31	18	17	32	1.94
90433485--90433846	113	3.2	115	80	7	348	34	17	16	31	1.93
90438271--90438320	25	2.0	26	88	11	77	36	16	20	28	1.93
90440128--90440154	2	13.5	2	100	0	54	0	0	48	51	1.00
90451056--90451106	18	2.7	19	77	11	61	49	0	0	50	1.00
90451048--90451106	29	2.1	28	84	9	75	52	0	0	47	1.00
90454372--90454628	39	6.5	39	92	1	390	19	21	29	29	1.98
90460094--90460314	40	5.6	40	86	6	283	24	27	21	26	2.00
90460094--90460314	79	2.8	80	86	7	283	24	27	21	26	2.00
90466070--90466186	30	3.9	30	79	3	112	28	21	5	45	1.73
90466412--90466452	15	2.5	17	76	11	50	68	12	4	14	1.36
90466872--90466944	36	2.1	34	82	10	85	16	0	34	49	1.46
90466934--90466973	3	13.3	3	100	0	80	32	0	0	67	0.91
90468191--90468248	29	2.0	29	96	0	107	43	24	17	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90470428--90470455	4	7.0	4	100	0	56	25	25	0	50	1.50
90471701--90472113	227	1.8	227	97	0	781	37	6	19	36	1.78
90474581--90474609	11	2.6	11	100	0	58	41	27	13	17	1.87
90474821--90475006	48	3.9	48	78	5	162	22	27	20	29	1.99
90474821--90475000	96	1.9	96	82	4	229	21	27	21	29	1.99
90475395--90475766	70	5.3	70	91	0	602	38	17	12	31	1.87
90477603--90477637	16	2.1	17	89	5	54	42	8	2	45	1.49
90477957--90478032	38	2.0	38	97	0	143	53	22	10	13	1.69
90494376--90494449	29	2.6	29	86	4	96	27	16	31	25	1.96
90500250--90500356	28	3.8	28	92	0	160	29	25	10	34	1.89
90507511--90507557	14	3.5	13	82	8	58	68	0	29	2	1.02
90508709--90508894	44	4.2	45	81	4	193	23	21	20	34	1.97
90510786--90511188	200	2.0	200	98	0	779	25	11	27	34	1.91
90511110--90511334	40	5.6	40	85	4	292	25	24	27	23	2.00
90511110--90511370	80	3.3	80	82	5	305	25	24	26	23	2.00
90511110--90511370	120	2.2	120	83	6	325	25	24	26	23	2.00
90518329--90518500	46	3.7	46	77	13	199	30	27	20	21	1.98
90518333--90518503	93	1.8	93	94	0	306	29	28	20	21	1.98
90520885--90520953	30	2.3	30	85	2	95	56	17	17	8	1.65
90520896--90520958	15	4.2	15	74	8	65	55	15	17	11	1.68
90533344--90533386	20	2.1	20	86	4	59	62	0	20	16	1.32
90534141--90534165	13	1.9	13	100	0	50	32	20	16	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90534718--90534839	27	4.5	26	75	8	93	28	15	27	27	1.96
90534717--90534839	54	2.3	55	81	4	142	29	15	27	27	1.96
90545127--90545183	25	2.2	26	81	3	71	43	19	15	21	1.87
90548894--90548935	15	2.8	15	81	0	57	64	11	0	23	1.27
90552414--90552545	40	3.3	40	87	3	169	26	28	21	24	1.99
90552414--90552598	79	2.3	82	82	9	222	25	27	21	25	2.00
90571050--90571089	13	3.1	13	85	0	53	20	35	27	17	1.95
90576122--90576289	44	3.8	44	86	6	225	23	21	29	25	1.99
90576136--90576331	45	4.5	42	80	8	155	26	20	28	24	1.99
90583400--90583466	25	2.7	25	86	4	82	32	17	11	37	1.87
90583660--90583698	16	2.4	16	100	0	78	28	20	5	46	1.72
90587656--90587828	43	4.0	43	70	14	122	34	26	15	23	1.95
90603499--90603610	28	4.0	28	81	4	111	25	14	31	28	1.95
90604594--90604627	18	1.9	18	88	5	52	41	11	17	29	1.85
90608640--90608875	50	4.7	49	79	7	244	31	26	16	25	1.97
90608640--90608875	101	2.4	100	83	4	296	31	26	16	25	1.97
90608638--90608916	151	1.8	151	84	6	377	32	26	15	25	1.95
90613018--90613137	62	1.9	62	84	0	159	23	24	18	34	1.96
90614533--90614658	48	2.6	48	81	5	157	30	18	26	25	1.98
90614384--90614743	186	1.9	185	79	2	398	29	17	25	27	1.98
90617165--90617389	40	5.6	40	87	6	312	23	23	28	24	2.00
90617165--90617389	83	2.8	81	88	6	332	23	23	28	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90620242--90620437	49	3.9	49	79	9	189	21	25	15	37	1.93
90625882--90625944	31	2.0	31	87	0	90	23	20	15	39	1.91
90626155--90626251	23	4.1	23	94	2	158	30	19	21	27	1.98
90626302--90626368	20	3.3	20	83	8	91	32	19	11	35	1.88
90633744--90633809	33	2.0	33	96	0	123	59	9	6	25	1.51
90634100--90634162	31	2.0	31	90	0	99	23	25	14	36	1.93
90634352--90634447	25	4.0	24	86	9	133	29	21	20	28	1.98
90634373--90634446	23	3.1	23	94	3	121	31	20	20	28	1.97
90634498--90634536	20	2.0	20	100	0	78	30	20	12	35	1.90
90634499--90634543	20	2.2	20	92	0	72	31	22	13	33	1.92
90639721--90639842	54	2.2	53	78	16	124	34	4	2	59	1.30
90639749--90639824	18	4.3	18	70	18	61	30	1	3	64	1.20
90641315--90642165	110	7.8	110	98	0	1609	23	22	17	36	1.95
90644313--90644458	42	3.4	44	79	13	153	24	19	24	31	1.98
90644306--90644469	43	3.8	43	74	13	158	25	18	24	31	1.98
90646506--90646549	23	2.0	22	86	4	61	25	0	20	54	1.45
90651117--90651169	28	1.9	27	96	3	97	35	15	26	22	1.93
90677231--90677374	42	3.4	42	80	5	155	33	15	23	27	1.95
90684215--90684239	12	2.1	12	100	0	50	60	16	8	16	1.58
90685045--90685199	42	3.7	42	82	3	177	29	15	25	30	1.96
90689025--90689855	47	17.7	47	97	2	1564	23	17	29	29	1.97
90692299--90692417	59	2.0	59	93	0	202	23	17	31	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90697319--90698192	93	9.4	93	97	2	1650	23	18	27	30	1.98
90704421--90704459	20	2.0	20	85	10	53	17	7	10	64	1.48
90704534--90704663	8	16.2	8	100	0	260	63	0	0	36	0.95
90707241--90707299	29	2.0	30	93	3	102	38	20	8	32	1.83
90713092--90713155	26	2.4	26	84	5	74	31	26	14	28	1.95
90713260--90713365	27	3.9	26	83	6	104	20	23	20	34	1.96
90716927--90717027	28	3.6	28	90	0	148	24	13	33	27	1.94
90722016--90722281	47	5.7	48	72	12	153	28	19	28	23	1.98
90722020--90722281	140	1.9	141	81	5	325	28	19	28	23	1.98
90736711--90736932	46	4.8	47	75	9	197	25	29	18	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284