Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: At_chr10 Parameters: 2 7 7 80 10 50 1000 Length: 95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  93  of  284  ( 34012 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30616738--30616772
17
1.9
17
88
11
52
2
22
0
74
0.95
30620486--30620580
46
2.0
47
97
2
183
43
14
12
29
1.83
30620771--30620810
14
3.1
14
73
26
52
47
7
7
37
1.60
30622426--30622464
19
2.1
19
100
0
78
41
5
0
53
1.23
30622549--30622603
14
3.6
15
86
13
69
72
14
12
0
1.12
30623484--30623594
38
2.8
40
72
8
93
23
20
26
29
1.99
30629710--30629778
21
3.4
21
71
15
72
36
1
7
55
1.37
30629765--30629795
15
2.1
14
94
5
53
35
3
6
54
1.42
30640602--30640647
21
2.2
21
84
0
56
41
4
13
41
1.63
30645567--30645748
79
2.3
81
83
7
221
24
28
21
25
1.99
30645567--30645748
40
4.6
40
82
6
219
24
28
21
25
1.99
30648724--30649076
90
3.9
90
85
0
429
37
15
20
26
1.92
30648769--30649076
45
6.8
45
85
0
391
36
15
20
27
1.93
30648730--30649079
45
7.8
45
82
1
389
36
15
20
26
1.93
30649057--30649195
44
3.4
44
68
22
149
36
17
18
26
1.94
30649062--30649213
76
2.0
76
100
0
304
34
19
17
28
1.94
30655363--30655551
38
4.9
38
87
2
254
34
25
21
19
1.96
30659745--30659833
45
2.0
45
93
0
151
37
24
4
33
1.76
30660219--30660248
15
2.0
15
93
0
51
36
13
6
43
1.70
30664633--30664678
21
2.2
21
84
7
58
15
28
34
21
1.94
30665497--30665585
45
1.9
47
81
4
110
40
15
21
22
1.91
30676243--30676285
5
8.6
5
100
0
86
60
20
0
18
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30677237--30677276
21
2.0
20
90
5
62
42
22
0
35
1.54
30682363--30682387
13
1.9
13
100
0
50
64
8
4
24
1.38
30691143--30691185
16
2.6
16
85
7
50
20
4
2
72
1.14
30698981--30699027
18
2.7
17
83
6
58
76
0
4
19
0.95
30706084--30706135
22
2.4
22
93
0
86
42
26
19
11
1.85
30706338--30706402
22
3.0
22
75
8
69
30
21
26
21
1.98
30706556--30706667
41
2.7
41
87
0
170
27
27
21
23
1.99
30706924--30707223
27
11.1
27
72
9
150
31
9
19
39
1.84
30706932--30707140
54
3.9
54
75
8
183
29
7
20
42
1.80
30706962--30707169
54
3.8
54
78
8
183
28
7
21
42
1.80
30706924--30707114
82
2.3
82
78
7
219
30
8
18
41
1.81
30707043--30707193
81
1.9
80
82
6
189
30
7
21
39
1.82
30707201--30707271
27
2.6
27
90
0
115
29
19
18
32
1.96
30724173--30724360
94
2.0
94
90
2
297
35
18
13
31
1.90
30726077--30726331
55
4.8
54
78
10
251
35
17
25
21
1.95
30726087--30726284
108
1.8
110
89
4
312
33
17
25
22
1.96
30726523--30726553
16
1.9
16
93
0
53
41
0
22
35
1.54
30729880--30729960
31
2.6
31
84
5
92
40
4
6
48
1.50
30730851--30730936
39
2.2
39
91
0
136
29
10
15
45
1.79
30732877--30732906
15
1.9
16
93
6
53
30
10
6
53
1.60
30734339--30734373
12
2.9
12
86
0
52
60
0
22
17
1.37
30734339--30734373
18
1.9
18
94
0
61
60
0
22
17
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30736808--30736928
58
2.1
59
87
6
176
26
18
7
47
1.74
30736916--30736954
9
4.2
9
86
3
51
15
30
0
53
1.42
30738846--30739093
62
4.0
62
98
0
469
30
13
16
39
1.86
30743611--30743641
16
1.9
16
93
0
53
41
0
6
51
1.27
30745050--30745084
18
1.9
18
88
0
52
20
2
71
5
1.19
30745271--30745309
9
4.3
9
83
0
51
12
0
64
23
1.28
30745383--30745426
6
7.3
6
89
0
61
11
0
70
18
1.16
30745731--30745763
1
33.0
1
100
0
66
0
0
100
0
0.00
30745783--30745822
3
13.3
3
83
0
53
2
0
72
25
0.97
30745777--30745822
12
3.9
12
88
2
67
2
0
73
23
0.94
30745939--30745974
18
2.0
18
88
0
54
22
2
63
11
1.39
30757756--30757892
71
1.9
71
93
0
238
45
10
11
32
1.74
30759937--30759994
27
2.2
28
80
20
72
1
27
0
70
0.97
30761209--30761267
29
2.0
29
87
6
84
20
23
28
27
1.99
30762521--30762565
23
1.9
24
90
4
74
44
28
17
8
1.79
30762587--30762645
24
2.5
24
78
15
68
40
16
18
23
1.91
30762684--30762734
23
2.2
23
92
0
84
33
17
31
17
1.94
30762729--30762781
27
2.0
27
88
0
79
41
15
24
18
1.89
30762731--30762799
27
2.6
26
81
6
75
43
17
21
17
1.88
30764202--30764418
46
4.6
45
73
13
179
29
18
28
23
1.98
30764199--30764465
47
5.7
45
72
15
170
29
17
28
23
1.97
30767920--30768039
60
2.0
59
95
1
213
29
15
14
40
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30769939--30769971
14
2.5
13
90
9
57
12
15
12
60
1.59
30779766--30779819
24
2.3
24
83
3
74
37
25
24
12
1.91
30788673--30788895
40
5.6
39
82
5
216
27
27
20
24
1.99
30788671--30788895
80
2.8
79
82
6
240
27
28
20
24
1.99
30788673--30788895
120
1.9
119
83
4
288
27
27
20
24
1.99
30793969--30794030
32
1.9
32
96
0
115
50
9
16
24
1.75
30795388--30795449
3
20.7
3
89
0
88
33
6
0
59
1.23
30800305--30800362
23
2.4
23
82
5
71
5
20
0
74
1.01
30809133--30809164
16
2.0
16
100
0
64
18
18
31
31
1.95
30813091--30813179
44
2.0
44
93
0
151
26
22
19
31
1.97
30813563--30813680
57
2.1
57
95
1
211
29
22
16
31
1.96
30818111--30818169
24
2.4
24
85
2
82
15
15
16
52
1.75
30821348--30821382
18
1.9
18
88
0
52
17
8
2
71
1.23
30835831--30835932
40
2.5
40
80
0
114
31
23
12
32
1.92
30835990--30836083
37
2.5
37
75
13
95
38
18
15
27
1.91
30840566--30840668
29
3.6
29
74
1
100
31
14
30
24
1.95
30846646--30846677
16
2.0
16
100
0
64
50
31
6
12
1.65
30847699--30847746
24
2.0
23
84
4
60
47
14
20
16
1.82
30848326--30848378
27
2.0
27
81
3
63
45
20
16
16
1.86
30850842--30850889
23
2.1
23
84
7
62
41
16
12
29
1.85
30858039--30858089
15
3.5
14
84
7
50
45
0
1
52
1.12
30858910--30858950
19
2.2
19
100
0
82
41
17
14
26
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30861029--30861074
3
15.3
3
100
0
92
32
0
0
67
0.91
30867572--30867643
19
3.9
19
87
8
114
36
13
12
37
1.83
30867575--30867651
36
2.2
35
84
11
95
37
11
14
36
1.82
30867575--30867651
19
4.3
19
84
11
83
37
11
14
36
1.82
30867992--30868265
45
6.1
45
79
8
315
24
27
16
31
1.96
30867992--30868265
89
3.0
89
83
7
322
24
27
16
31
1.96
30868205--30868421
78
2.8
78
95
0
389
23
24
20
30
1.99
30868552--30868750
94
2.2
91
82
4
247
25
24
19
31
1.98
30868686--30868776
44
2.1
44
95
0
164
27
27
15
29
1.96
30873257--30873328
19
3.9
19
87
8
114
36
13
12
37
1.83
30873260--30873336
36
2.2
35
84
11
95
37
11
14
36
1.82
30873260--30873336
19
4.3
19
84
11
83
37
11
14
36
1.82
30873818--30873893
22
3.7
21
76
15
68
40
17
6
35
1.75
30873847--30873944
35
2.7
37
87
12
150
35
16
10
37
1.82
30873854--30873944
19
4.9
19
92
8
161
36
15
10
37
1.83
30874082--30874195
56
2.0
56
98
0
219
22
13
22
41
1.88
30878187--30878280
23
4.1
23
85
0
134
47
4
25
22
1.69
30882697--30882790
23
4.1
23
85
0
134
47
4
25
22
1.69
30883949--30883999
26
2.0
26
92
7
86
47
3
0
49
1.20
30886880--30886982
43
2.4
43
90
0
161
37
25
15
21
1.92
30887447--30887488
18
2.4
18
80
7
52
28
4
2
64
1.26
30896397--30896424
6
4.7
6
100
0
56
50
14
0
35
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30897527--30897933
196
2.1
187
79
8
424
28
10
13
47
1.75
30898063--30898613
206
2.7
201
81
6
623
29
10
13
46
1.76
30913981--30914050
35
2.0
35
100
0
140
25
8
8
57
1.57
30914994--30915090
40
2.4
40
79
5
106
27
27
17
26
1.98
30919374--30919415
20
2.2
19
86
4
57
52
0
45
2
1.13
30929350--30929574
80
2.8
79
82
4
238
25
28
20
25
1.99
30929352--30929521
40
4.3
40
89
3
245
25
27
21
25
1.99
30929352--30929574
120
1.9
119
80
6
263
25
27
21
25
1.99
30937255--30937517
40
6.6
40
87
3
309
26
28
20
23
1.99
30940062--30940100
11
3.4
11
86
10
51
33
23
0
43
1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284