genome.fa.s9.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  148  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49583569--49583823	55	4.8	53	81	7	227	21	25	16	36	1.94
49583616--49583816	108	1.8	110	89	4	318	22	25	17	33	1.96
49588175--49588348	53	3.3	53	83	7	180	35	17	25	21	1.95
49589543--49589848	153	2.0	153	100	0	612	34	9	18	37	1.82
49590224--49590265	21	2.0	21	86	4	59	26	7	19	47	1.74
49595535--49595582	23	2.1	23	84	7	62	33	2	6	58	1.35
49595598--49595665	9	7.4	9	73	15	59	35	1	1	61	1.14
49595598--49595654	19	3.2	18	79	13	57	36	1	1	59	1.18
49595560--49595631	29	2.5	28	78	10	83	38	0	5	55	1.23
49595478--49595655	28	6.5	27	69	20	86	34	1	3	60	1.25
49595558--49595643	38	2.3	39	82	8	97	37	1	4	56	1.27
49595623--49595654	17	1.9	16	93	6	55	34	3	0	62	1.11
49595650--49595703	11	5.1	11	82	8	76	29	1	1	66	1.12
49595559--49595697	9	14.6	9	69	16	50	33	1	3	61	1.22
49595588--49595703	10	11.8	10	74	13	64	33	1	2	62	1.19
49602145--49602178	14	2.4	14	90	0	50	41	5	29	23	1.78
49602547--49602622	9	8.4	9	89	0	89	38	23	11	26	1.89
49602547--49602622	27	2.8	27	85	0	107	38	23	11	26	1.89
49602643--49602683	6	6.5	6	83	10	55	17	0	4	78	0.93
49609362--49609536	46	3.7	48	82	6	216	24	29	18	27	1.98
49609362--49609536	94	1.9	94	89	2	271	24	29	18	27	1.98
49613902--49613942	21	2.0	21	85	0	55	21	12	19	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49619172--49619349	27	6.6	27	84	3	205	29	28	15	26	1.96
49619193--49619348	82	1.9	81	88	3	233	29	28	15	26	1.96
49631337--49631466	66	1.9	67	84	10	174	33	16	30	20	1.94
49635857--49636020	42	3.9	43	82	9	203	30	26	16	26	1.97
49635857--49636013	85	1.9	84	86	4	226	29	26	17	27	1.97
49638523--49638562	21	1.9	21	84	0	53	27	22	35	15	1.94
49639697--49639960	46	5.6	47	77	10	145	23	29	19	28	1.98
49639750--49639962	46	4.6	47	81	9	231	22	30	19	27	1.98
49639693--49639959	140	1.9	141	83	5	344	22	29	19	27	1.98
49647370--49647594	47	4.8	48	78	7	212	23	30	17	28	1.97
49647469--49647638	46	3.7	46	83	6	191	24	29	18	27	1.98
49647372--49647638	140	1.9	141	83	3	351	23	29	17	28	1.97
49649170--49649283	44	2.7	42	80	11	126	28	24	21	25	1.99
49651565--49651656	29	3.2	29	87	4	134	42	17	11	28	1.85
49666259--49666284	13	2.0	13	100	0	52	30	23	7	38	1.83
49670766--49670848	42	2.0	41	92	0	130	42	22	14	19	1.87
49675846--49675877	16	2.0	16	100	0	64	50	18	6	25	1.70
49677376--49677482	27	4.0	26	77	9	81	28	17	25	28	1.98
49677409--49677494	26	3.3	26	80	3	100	27	19	23	29	1.98
49677518--49677574	27	2.1	27	83	0	69	29	15	24	29	1.96
49677379--49677574	108	1.8	108	83	4	261	29	15	24	30	1.96
49677379--49677597	108	2.0	108	80	3	244	30	15	24	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49682378--49682430	22	2.4	22	90	6	81	43	35	15	5	1.70
49682400--49682971	38	15.1	38	83	1	664	34	31	19	13	1.91
49685234--49685403	43	4.0	43	78	7	166	24	15	25	34	1.95
49685269--49685384	42	2.7	43	84	6	146	24	16	25	33	1.96
49689724--49689877	67	2.3	67	82	7	179	33	16	28	21	1.95
49692167--49692301	43	3.1	42	78	12	132	31	25	19	23	1.98
49692198--49692288	42	2.1	44	86	8	125	34	26	17	21	1.96
49706426--49706517	42	2.2	42	82	5	114	29	20	20	29	1.98
49706407--49706565	43	3.7	42	77	10	135	28	25	20	25	1.99
49710430--49710465	17	2.1	18	89	5	56	11	36	36	16	1.84
49727752--49727927	23	7.7	23	84	5	203	30	26	19	23	1.98
49742544--49742680	54	2.6	54	92	1	231	42	14	13	29	1.84
49742532--49742680	27	5.6	27	84	1	192	42	14	12	30	1.82
49745861--49745971	37	3.0	38	90	5	174	30	31	16	21	1.95
49745861--49745999	37	3.8	37	86	1	172	28	30	16	24	1.97
49746153--49746243	46	2.0	46	86	0	128	26	31	8	32	1.87
49746217--49746411	47	4.1	47	82	5	237	28	28	9	34	1.88
49746217--49746411	98	2.0	94	89	3	291	28	28	9	34	1.88
49751442--49751670	40	5.7	39	84	5	262	27	27	19	24	1.99
49751449--49751670	80	2.8	80	86	4	297	27	27	19	25	1.99
49751442--49751669	120	1.9	120	88	2	341	27	27	19	25	1.99
49764737--49764781	22	2.0	22	91	0	72	35	22	24	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49766570--49766606	17	2.1	18	85	14	51	51	13	16	18	1.76
49779732--49779773	18	2.3	19	76	12	52	42	14	4	38	1.66
49779948--49779992	22	2.0	22	91	0	72	33	15	26	24	1.95
49779976--49780033	29	2.0	30	86	3	82	37	22	25	13	1.91
49783988--49784133	40	3.7	40	82	7	172	24	22	27	25	2.00
49783988--49784156	80	2.1	80	80	7	184	26	21	26	25	2.00
49791107--49791252	40	3.7	40	82	7	172	24	22	27	25	2.00
49791107--49791285	80	2.2	80	80	6	186	26	21	26	25	2.00
49794147--49794174	13	2.2	13	100	0	56	64	0	14	21	1.29
49794196--49794236	23	1.9	21	85	14	57	29	0	26	43	1.55
49795840--49795876	19	1.9	19	94	0	65	70	13	0	16	1.17
49804768--49804821	22	2.5	22	73	11	56	31	22	24	22	1.98
49804961--49805085	41	3.0	41	91	0	196	27	28	21	23	1.99
49805303--49805643	27	12.6	27	78	1	126	29	11	21	38	1.88
49805387--49805645	54	4.8	54	79	0	250	28	10	22	38	1.87
49805387--49805645	27	9.6	27	81	5	200	28	10	22	38	1.87
49805387--49805645	81	3.2	81	80	3	254	28	10	22	38	1.87
49805602--49805725	54	2.3	53	84	12	155	30	18	16	34	1.93
49805634--49805725	27	3.4	27	95	3	159	29	19	14	36	1.91
49808652--49808772	41	3.0	40	91	2	188	27	28	21	22	1.99
49809010--49809167	27	5.9	27	84	0	100	31	16	19	32	1.94
49809010--49809134	54	2.3	54	84	0	151	31	16	20	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49809030--49809156	54	2.4	54	83	0	164	31	17	18	32	1.94
49809555--49809598	22	2.0	22	100	0	88	27	36	13	22	1.92
49817646--49817670	13	1.9	13	100	0	50	68	16	0	16	1.22
49822869--49822925	29	2.0	29	92	0	96	26	10	28	35	1.89
49824282--49824453	46	3.7	46	70	14	120	30	18	27	23	1.97
49825660--49825841	92	2.0	92	92	0	301	49	19	9	20	1.77
49829453--49829587	31	4.4	31	78	10	116	25	12	18	42	1.86
49829453--49829528	29	2.6	29	85	8	91	28	13	17	40	1.87
49829527--49829598	31	2.3	31	80	4	83	22	9	20	47	1.79
49830635--49830666	15	2.1	15	100	0	64	18	6	34	40	1.76
49831158--49831203	22	2.1	22	100	0	92	32	15	13	39	1.85
49844245--49844361	62	1.9	61	84	5	157	50	5	5	39	1.47
49844339--49844427	19	4.8	18	72	13	65	51	4	1	42	1.29
49844370--49844428	30	2.0	30	89	0	91	52	3	0	44	1.17
49859183--49859234	27	1.9	27	84	7	70	57	13	7	21	1.61
49863121--49863162	22	1.9	22	90	0	66	0	23	0	76	0.79
49863129--49863162	17	2.0	17	88	0	50	0	23	0	76	0.79
49866274--49866310	14	2.5	15	80	20	51	59	0	2	37	1.12
49866897--49867015	41	2.9	41	81	8	120	36	14	9	39	1.78
49866898--49867222	81	4.0	80	77	6	262	35	13	8	42	1.76
49866877--49867222	40	8.6	40	80	3	264	34	13	9	42	1.77
49866874--49867210	101	3.3	101	76	9	294	34	13	9	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49866876--49867219	20	17.0	20	74	2	222	34	13	9	42	1.76
49867508--49867550	20	2.1	21	86	4	61	67	4	0	27	1.10
49867513--49867570	26	2.1	28	81	12	68	60	1	1	36	1.17
49871504--49871773	87	3.2	86	81	4	298	46	11	11	30	1.75
49871722--49871828	55	1.9	55	90	0	169	46	6	9	37	1.62
49871776--49871961	86	2.2	86	83	4	232	44	9	11	34	1.73
49871949--49871983	17	2.1	16	89	5	52	20	2	0	77	0.90
49872073--49872115	20	2.1	21	86	4	61	67	4	0	27	1.10
49873295--49873427	68	1.9	69	86	4	189	45	25	4	24	1.72
49873302--49873454	68	2.2	68	82	5	175	43	24	6	25	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284