genome.fa.s9.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  107  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35100917--35101465	27	20.4	27	85	1	715	25	20	19	34	1.96
35106227--35106300	27	2.7	27	82	0	94	29	16	16	37	1.90
35106295--35106365	27	2.6	27	82	4	90	38	18	16	26	1.92
35109173--35109265	47	2.0	47	100	0	186	30	22	25	21	1.99
35109269--35109318	21	2.4	21	96	0	91	14	22	38	26	1.91
35111979--35112089	47	2.4	47	87	0	150	34	26	16	23	1.95
35116196--35116233	18	2.0	20	85	10	53	31	2	5	60	1.33
35118075--35118248	56	3.1	56	84	1	233	38	11	21	28	1.88
35118769--35118803	18	1.9	18	88	0	52	20	5	42	31	1.75
35121830--35121891	27	2.3	28	83	8	83	27	16	16	40	1.89
35121884--35121958	27	2.8	26	76	13	64	29	8	22	40	1.82
35130746--35130774	15	1.9	15	100	0	58	13	20	13	51	1.75
35134216--35134407	50	3.9	50	84	2	246	25	21	27	26	1.99
35135585--35135624	21	1.9	21	85	10	55	22	2	25	50	1.62
35138199--35138347	50	3.1	49	92	3	232	26	24	14	34	1.93
35138182--35138347	50	3.4	47	87	6	208	27	23	14	34	1.93
35140502--35140545	14	3.2	13	81	9	52	15	0	6	77	0.97
35144582--35144622	10	4.3	10	90	9	68	39	12	0	48	1.41
35148338--35148421	44	1.9	44	92	0	141	38	19	13	29	1.89
35148583--35148628	24	1.9	24	81	0	56	52	19	4	23	1.64
35150052--35150089	19	2.0	19	85	10	51	57	15	2	23	1.51
35153840--35153888	25	2.0	25	100	0	98	46	16	8	28	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35154331--35154413	37	2.2	37	80	4	87	38	28	10	21	1.87
35157378--35157476	29	3.4	29	92	0	153	26	33	14	26	1.94
35157378--35157490	29	3.9	29	90	0	145	27	32	15	24	1.95
35165112--35165228	29	4.1	29	75	3	103	26	31	13	28	1.94
35165564--35165601	19	2.0	19	100	0	76	42	26	5	26	1.76
35170355--35170497	40	3.6	39	80	2	151	27	27	20	23	1.99
35172790--35172881	46	2.0	46	89	0	139	31	7	23	36	1.83
35178498--35178679	47	3.9	47	91	0	274	31	10	31	26	1.90
35178638--35178711	31	2.4	31	95	0	130	25	16	39	18	1.91
35178844--35178922	37	2.1	37	88	4	115	25	18	30	25	1.98
35184069--35184151	43	1.9	43	92	0	139	20	20	26	32	1.97
35189141--35189191	26	2.0	26	84	7	68	23	21	9	45	1.82
35213799--35213965	46	3.6	46	73	6	129	23	24	20	31	1.98
35216962--35217044	43	1.9	43	90	0	130	28	14	22	33	1.94
35218541--35218574	17	1.9	18	88	5	52	32	5	8	52	1.56
35218989--35219026	14	2.7	14	100	0	76	39	5	18	36	1.73
35219010--35219055	19	2.3	20	92	7	85	26	10	15	47	1.78
35230258--35230300	21	2.1	20	91	4	68	83	0	2	13	0.74
35230261--35230300	16	2.4	17	91	4	64	82	0	2	15	0.77
35234973--35235238	47	5.7	47	89	0	370	25	29	13	32	1.93
35235103--35235181	22	3.5	22	67	16	61	27	30	11	30	1.91
35235290--35235463	47	3.7	47	90	0	276	28	28	11	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35241902--35241951	14	3.8	14	74	15	61	26	28	2	44	1.65
35241900--35241950	25	2.0	25	92	0	84	27	25	1	45	1.64
35242786--35242835	22	2.3	22	89	0	73	24	20	22	34	1.97
35243899--35243931	14	2.3	15	89	5	50	21	0	12	66	1.23
35246734--35246774	19	2.2	19	90	0	64	41	21	7	29	1.80
35250877--35250916	21	1.9	21	89	0	62	10	40	0	50	1.36
35252223--35252260	10	3.9	10	86	6	51	39	0	21	39	1.53
35252223--35252260	19	2.0	20	84	5	51	39	0	21	39	1.53
35262584--35262697	58	2.0	57	96	0	201	25	10	23	39	1.87
35264285--35264354	27	2.5	28	86	4	88	32	21	25	20	1.97
35264285--35264374	28	3.2	26	81	7	90	31	22	25	21	1.98
35264480--35264544	28	2.3	28	89	5	96	29	6	29	35	1.82
35266663--35266693	14	2.2	14	94	0	53	32	12	19	35	1.90
35267409--35267583	89	2.0	89	97	0	332	31	17	21	29	1.96
35267903--35267943	16	2.6	17	85	14	61	36	12	4	46	1.63
35267822--35268019	97	2.0	98	95	0	353	34	16	7	41	1.76
35271284--35271334	24	2.1	23	82	13	59	50	19	11	17	1.76
35271294--35271337	6	7.2	6	84	5	61	50	15	15	18	1.79
35271372--35271450	39	2.2	34	82	13	97	40	20	17	21	1.91
35271326--35271637	87	3.6	87	86	2	387	40	20	18	20	1.91
35271317--35271627	132	2.4	127	83	4	372	40	20	18	20	1.91
35271317--35271637	45	7.3	44	84	8	359	40	19	18	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35281261--35282210	49	19.6	49	97	1	1765	30	28	8	32	1.86
35288576--35289004	107	4.0	107	98	0	822	49	14	8	27	1.72
35290639--35291019	95	4.0	95	99	0	753	21	24	15	38	1.93
35291729--35291806	34	2.3	35	78	14	92	33	3	11	51	1.56
35293287--35293314	13	2.2	13	100	0	56	92	7	0	0	0.37
35293370--35293394	11	2.3	11	100	0	50	0	8	0	92	0.40
35295383--35295481	52	1.9	52	97	0	189	31	16	14	38	1.88
35296002--35296071	26	2.6	27	79	4	79	27	27	10	35	1.88
35296029--35296099	26	2.7	26	86	2	97	28	23	8	39	1.84
35309638--35309689	27	2.0	26	84	3	68	17	26	21	34	1.95
35309642--35309908	104	2.6	104	98	1	509	22	28	19	29	1.98
35316923--35316974	27	2.0	26	84	3	68	17	26	21	34	1.95
35316990--35317051	31	2.0	32	87	3	90	17	24	22	35	1.95
35317014--35317072	27	2.2	27	84	3	75	20	23	20	35	1.96
35319179--35319221	15	2.9	14	80	10	50	62	11	6	18	1.50
35324017--35324285	46	5.8	46	78	15	295	21	20	29	29	1.98
35324014--35324278	93	2.8	93	97	1	496	21	20	29	28	1.98
35332876--35332935	20	3.1	19	83	7	57	35	11	30	23	1.90
35332889--35332935	20	2.3	21	89	7	71	34	10	31	23	1.89
35335164--35335210	20	2.3	20	85	0	67	21	12	36	29	1.91
35336881--35336986	48	2.2	48	85	9	137	14	24	1	59	1.45
35338011--35338035	13	1.9	13	100	0	50	0	8	0	92	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35339597--35339642	20	2.3	20	80	0	56	23	13	32	30	1.93
35340958--35341004	18	2.6	18	80	12	60	19	19	0	61	1.34
35341939--35342008	12	5.6	12	82	14	79	10	5	8	75	1.18
35341966--35342023	26	2.2	26	81	6	64	15	6	6	70	1.30
35344313--35344342	15	2.0	15	100	0	60	46	0	26	26	1.53
35350880--35350906	14	1.9	14	100	0	54	33	22	14	29	1.94
35353590--35353629	18	2.2	18	100	0	80	55	10	7	27	1.60
35354519--35354593	33	2.2	34	85	4	107	42	12	6	38	1.68
35364071--35364248	27	6.6	27	84	3	205	29	28	15	26	1.96
35364092--35364247	82	1.9	81	88	3	233	29	28	15	26	1.96
35364071--35364262	82	2.3	83	77	11	216	30	27	14	28	1.95
35372157--35372334	27	6.6	27	83	3	196	29	27	15	27	1.96
35388495--35388544	26	1.9	26	95	0	91	28	18	30	24	1.97
35390730--35390768	19	2.1	19	100	0	78	17	15	15	51	1.77
35391463--35391519	30	1.9	30	88	0	87	29	21	7	42	1.79
35403648--35403832	43	4.5	41	83	6	207	24	28	21	25	1.99
35403685--35403838	43	3.7	43	87	2	233	25	27	20	25	1.99
35412000--35412054	24	2.3	24	96	0	101	56	14	14	14	1.68
35413910--35414021	26	4.3	26	83	7	131	26	23	21	28	1.99
35413923--35414021	26	3.8	26	88	4	146	27	23	23	26	2.00
35413916--35414021	53	2.1	50	91	5	167	27	21	21	29	1.99
35422082--35422318	20	11.9	20	95	0	429	35	21	10	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35422082--35422346	60	4.5	60	92	2	430	35	21	10	33	1.87
35422090--35422321	11	23.2	10	69	17	144	35	22	9	32	1.86
35422365--35422412	25	1.9	25	86	0	69	27	14	22	35	1.93
35425222--35425261	21	1.9	21	94	0	71	35	17	15	32	1.91
35426302--35426466	57	2.9	55	75	11	154	40	1	3	54	1.26
35426350--35426387	20	2.0	18	90	10	58	39	0	2	57	1.12
35426302--35426464	58	2.8	57	78	11	172	41	1	3	53	1.26
35426630--35426684	16	3.4	16	82	0	65	30	23	3	41	1.72
35428735--35428864	65	2.0	65	92	0	215	39	8	21	30	1.83
35429290--35429392	46	2.2	48	87	3	147	34	14	24	26	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284