genome.fa.s9.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  112  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36850796--36850848	27	2.0	25	82	7	61	56	9	16	16	1.65
36856773--36857192	210	2.0	210	99	0	831	36	25	18	20	1.95
36860220--36860287	29	2.3	29	85	5	93	27	30	13	27	1.94
36860109--36860436	174	1.9	174	96	0	611	31	24	14	29	1.94
36860394--36860467	29	2.6	29	83	16	100	28	28	14	28	1.96
36863304--36863418	57	2.0	57	96	0	212	21	12	29	36	1.90
36877311--36877486	27	6.9	27	74	11	154	31	19	7	40	1.81
36877266--36877514	54	4.8	54	70	8	156	34	20	8	36	1.82
36877311--36877496	99	1.9	99	95	0	336	32	20	7	39	1.80
36877464--36877738	27	10.2	27	78	6	236	40	21	8	29	1.83
36877749--36877800	27	1.9	27	88	7	79	38	13	13	34	1.84
36877854--36877945	27	3.4	27	83	8	116	34	19	26	19	1.96
36878679--36878709	16	1.9	16	93	0	53	29	22	12	35	1.91
36878743--36878866	26	4.8	26	87	1	178	26	21	24	27	1.99
36878743--36878866	52	2.4	52	94	1	214	26	21	24	27	1.99
36879085--36879148	31	2.1	31	93	0	110	32	14	23	29	1.94
36879085--36879163	31	2.5	31	89	0	104	29	16	24	30	1.96
36881398--36881684	27	10.7	27	78	4	186	39	19	8	32	1.81
36881392--36881767	54	6.9	54	72	5	247	38	19	8	32	1.83
36881505--36881656	80	1.9	80	84	2	207	42	19	7	29	1.80
36881464--36881746	27	10.4	27	77	8	171	38	19	8	33	1.82
36881791--36881887	27	3.6	27	84	2	97	36	21	21	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36882690--36882877	26	7.3	26	86	4	258	29	21	22	27	1.99
36882690--36882877	52	3.7	52	92	3	303	29	21	22	27	1.99
36883083--36883152	30	2.3	31	90	2	106	34	17	21	27	1.95
36892191--36892375	40	4.6	39	82	5	194	24	22	27	25	2.00
36892191--36892375	79	2.3	81	82	7	218	24	22	27	25	2.00
36892244--36892408	79	2.1	79	80	6	183	26	20	26	26	1.99
36901263--36901377	29	4.0	29	77	10	112	27	28	16	26	1.97
36905851--36905890	18	2.2	19	86	13	57	12	37	30	20	1.89
36908469--36908554	28	3.0	28	84	3	109	27	27	15	29	1.96
36912384--36912559	50	3.5	49	85	1	226	25	17	26	30	1.97
36912376--36912572	50	3.9	50	82	1	225	25	18	26	29	1.98
36924071--36924096	13	2.0	13	100	0	52	30	0	7	61	1.24
36924457--36924644	94	2.0	94	98	0	367	36	6	22	34	1.80
36925548--36925724	40	4.5	40	88	3	261	24	24	25	25	2.00
36925548--36925724	79	2.2	78	89	5	266	24	24	25	25	2.00
36929743--36929790	25	1.9	25	100	0	96	39	4	29	27	1.75
36940815--36941069	40	6.5	40	86	8	337	23	23	29	23	1.99
36944490--36944661	40	4.3	40	84	5	215	27	26	22	23	2.00
36947716--36947921	40	5.2	40	90	1	317	23	23	26	27	2.00
36955075--36955150	40	1.9	40	86	5	109	30	18	22	28	1.97
36956933--36957119	78	2.4	78	100	0	374	45	15	18	20	1.85
36957312--36957426	27	4.3	27	89	5	144	37	20	20	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36965797--36965928	40	3.3	40	86	2	176	26	28	21	23	1.99
36967652--36967706	27	2.0	27	100	0	110	47	14	10	27	1.78
36970848--36971003	43	3.6	45	72	9	128	33	24	16	26	1.95
36973684--36973724	22	1.9	21	90	5	64	19	26	14	39	1.90
36980811--36980843	10	3.3	10	95	0	57	27	9	45	18	1.79
36985827--36985859	10	3.3	10	95	0	57	27	9	45	18	1.79
36990005--36990059	17	2.8	20	71	18	53	70	1	18	9	1.22
36990023--36990067	17	2.8	16	83	6	63	68	0	20	11	1.19
36992361--36992413	11	5.4	10	79	16	58	37	5	20	35	1.77
36992368--36992425	11	5.6	11	74	15	61	37	8	18	34	1.82
36992359--36992425	20	3.3	20	89	4	100	38	8	19	32	1.83
36992475--36992558	26	3.3	26	85	8	113	29	21	23	25	1.99
36992769--36992832	31	2.1	31	90	0	101	39	15	21	23	1.92
37000227--37000392	85	2.0	85	96	0	305	19	10	28	41	1.84
36999600--37001018	711	2.0	711	98	0	2741	24	13	29	32	1.93
37000309--37001538	626	2.0	626	99	0	2408	25	13	29	31	1.94
37001743--37001817	20	3.8	20	87	6	102	40	9	17	33	1.81
37001867--37002028	26	6.3	26	87	3	206	30	19	21	29	1.97
37004289--37004359	36	2.0	36	83	8	92	22	8	14	54	1.66
37004357--37004479	50	2.4	52	80	4	151	35	13	11	39	1.81
37005740--37005810	27	2.7	26	91	2	115	42	18	15	23	1.88
37006038--37006072	17	2.0	18	94	5	63	17	37	34	11	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37008491--37008738	67	3.8	65	76	13	206	25	29	16	29	1.96
37012494--37012532	21	1.9	20	84	5	51	43	20	2	33	1.65
37018763--37018800	19	2.1	18	95	5	67	39	0	0	60	0.97
37018923--37019066	67	2.1	67	94	0	252	38	2	12	46	1.53
37019364--37019413	24	2.0	25	85	11	68	54	4	2	40	1.31
37023234--37023386	43	3.6	44	74	9	129	27	20	24	27	1.99
37023281--37023386	42	2.5	43	77	11	103	28	20	23	27	1.99
37030471--37030565	34	2.7	34	83	3	109	23	21	22	33	1.97
37041885--37042023	47	3.0	47	92	1	217	28	13	12	45	1.81
37042803--37043001	45	4.5	45	84	2	242	26	20	26	27	1.99
37054210--37055161	40	23.8	40	98	0	380	31	27	17	22	1.97
37054254--37055160	80	11.3	80	98	0	1699	32	27	17	22	1.97
37054254--37055160	120	7.6	120	98	0	1699	32	27	17	22	1.97
37065504--37065645	29	4.9	29	80	3	124	23	23	14	39	1.91
37066377--37066503	63	2.0	63	98	0	245	38	15	13	32	1.87
37069918--37069987	25	2.8	25	91	0	113	27	22	24	25	2.00
37070194--37070406	27	7.9	27	86	7	226	27	22	15	35	1.93
37070221--37070413	81	2.4	81	88	6	268	27	20	15	36	1.92
37070408--37070545	27	5.1	27	90	0	213	40	5	22	31	1.77
37070408--37070561	81	1.9	78	89	3	236	40	6	22	30	1.79
37070559--37070726	27	6.2	27	80	2	185	29	8	21	40	1.83
37070559--37070736	81	2.2	81	83	6	209	29	8	20	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37076928--37077152	114	1.9	118	84	7	300	29	25	22	23	1.99
37076928--37077123	38	5.1	38	89	3	277	30	25	21	21	1.99
37081212--37081383	79	2.2	79	84	3	220	25	21	27	25	1.99
37081212--37081416	40	5.2	39	82	7	211	26	21	27	24	1.99
37081239--37081416	79	2.2	80	81	2	198	25	21	27	24	2.00
37089156--37089327	79	2.2	79	84	3	220	25	21	27	25	1.99
37089103--37089325	40	5.6	39	81	8	209	25	21	27	25	1.99
37089183--37089360	79	2.2	80	80	3	191	25	21	28	24	1.99
37090871--37091016	40	3.7	40	84	5	188	26	27	22	23	2.00
37103205--37103261	26	2.6	19	68	31	51	36	0	7	56	1.27
37103202--37103255	26	2.1	26	100	0	108	38	0	7	53	1.29
37104904--37104962	11	5.0	12	72	10	50	42	22	0	35	1.54
37106264--37106307	23	1.9	23	86	9	63	31	6	15	45	1.73
37132834--37132987	43	3.6	41	78	11	159	25	16	24	32	1.96
37134366--37134406	21	2.0	21	100	0	82	39	0	19	41	1.52
37140530--37140588	21	2.8	21	80	10	66	23	13	25	37	1.92
37146405--37146500	29	3.3	29	91	1	149	31	30	13	25	1.94
37149846--37149890	8	5.6	8	83	0	63	60	20	13	6	1.55
37149999--37150037	9	4.2	9	83	6	51	28	17	38	15	1.91
37150113--37150225	29	3.9	29	84	1	138	31	16	27	23	1.96
37167303--37167452	67	2.2	67	81	8	171	32	17	28	21	1.96
37167327--37167510	67	2.8	64	77	8	194	29	17	29	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37171234--37171321	30	2.9	30	78	9	90	28	17	25	29	1.97
37175908--37175932	13	1.9	13	100	0	50	64	8	0	28	1.22
37176153--37176208	10	5.5	10	77	12	51	41	21	21	16	1.90
37176154--37176208	21	2.7	21	85	2	67	41	21	20	16	1.90
37177564--37177603	14	2.9	14	85	11	55	50	7	32	10	1.64
37179716--37179772	5	11.0	5	75	20	55	3	17	1	77	1.00
37179716--37179772	16	3.7	14	82	15	60	3	17	1	77	1.00
37179716--37179783	21	3.2	21	76	15	61	2	17	2	76	1.04
37180717--37180748	11	2.9	11	100	0	64	15	0	9	75	1.05
37182420--37182516	30	3.2	30	71	8	90	27	15	28	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284