genome.fa.s9.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  139  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46586757--46586850	32	2.8	32	75	13	84	27	25	20	26	1.99
46594491--46594695	40	5.2	40	89	2	290	26	27	21	23	1.99
46597730--46597906	39	4.5	39	85	1	255	28	27	23	20	1.99
46597899--46597991	39	2.4	39	78	3	107	24	22	18	34	1.96
46601898--46601972	32	2.4	31	79	2	78	29	25	21	24	1.99
46607629--46607666	20	2.0	20	90	10	62	39	13	15	31	1.86
46610881--46610983	35	3.0	34	78	10	127	30	10	19	39	1.85
46617642--46617851	47	4.4	47	90	2	339	32	8	29	30	1.86
46617642--46617847	96	2.2	95	93	1	351	33	8	29	29	1.86
46619656--46619879	40	5.6	40	86	7	296	24	22	28	25	2.00
46619655--46619912	119	2.2	119	83	6	310	25	22	27	25	2.00
46621271--46621486	49	4.5	47	86	4	288	33	9	29	27	1.88
46621271--46621486	96	2.2	96	86	3	292	33	9	29	27	1.88
46627640--46627776	72	1.9	72	83	3	177	24	20	29	24	1.99
46631958--46632044	44	2.0	43	95	0	147	25	28	20	24	1.98
46634549--46634581	15	2.2	15	94	0	57	30	0	24	45	1.53
46653099--46653155	28	2.0	28	82	0	69	33	28	7	31	1.84
46655324--46655659	42	7.7	42	74	12	198	31	25	14	28	1.95
46655453--46655661	48	4.6	46	76	15	172	29	24	15	30	1.96
46655630--46655885	73	3.5	72	83	4	320	27	30	17	25	1.97
46655630--46655880	37	6.9	36	80	4	290	27	29	17	25	1.97
46659628--46659728	24	4.2	24	96	0	184	34	3	42	18	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46662351--46662570	40	5.5	40	90	2	311	24	20	28	26	1.99
46662351--46662570	79	2.8	80	88	3	320	24	20	28	26	1.99
46662338--46662561	119	1.9	120	87	4	337	23	21	28	26	1.99
46662336--46662586	119	2.1	119	84	5	330	24	20	27	27	1.99
46665828--46666119	39	7.5	39	98	0	539	25	28	20	25	1.99
46673415--46673676	39	6.7	40	88	7	337	24	27	22	25	2.00
46675391--46675501	54	2.1	53	89	1	168	18	24	21	35	1.96
46675391--46675501	27	4.2	26	84	7	134	18	24	21	35	1.96
46677921--46677953	16	2.1	16	94	0	57	18	15	9	57	1.63
46680625--46680650	12	2.2	12	100	0	52	61	0	0	38	0.96
46683711--46683746	17	2.1	18	89	5	56	41	5	5	47	1.50
46683907--46683964	30	2.0	29	86	3	80	43	12	8	36	1.73
46687544--46687598	28	2.0	28	92	0	92	41	20	20	18	1.90
46690632--46690676	22	2.0	22	82	0	54	22	8	20	48	1.76
46695024--46695430	47	8.7	47	96	3	716	22	19	29	28	1.98
46702828--46702998	93	1.8	93	89	2	272	22	21	27	29	1.99
46702831--46703006	46	3.8	47	77	12	193	22	20	27	30	1.98
46706668--46706824	29	5.5	29	87	3	212	33	26	11	29	1.91
46706669--46706824	57	2.7	58	87	6	212	33	25	11	29	1.91
46707272--46707297	12	2.2	12	100	0	52	42	0	7	50	1.31
46709824--46709995	40	4.3	39	76	6	150	25	21	26	26	1.99
46715936--46715994	30	2.0	30	96	0	109	23	10	23	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46717006--46717150	40	3.6	40	87	4	202	25	24	26	24	2.00
46718558--46718590	17	2.0	16	100	0	57	24	12	36	24	1.89
46723562--46723737	46	3.8	46	79	12	207	21	19	28	30	1.97
46723559--46723730	93	1.8	93	93	0	299	21	19	29	29	1.98
46726405--46727265	23	37.7	23	74	11	551	33	4	23	38	1.75
46726406--46726850	160	2.8	160	90	3	666	33	4	23	38	1.75
46726566--46727259	206	3.4	206	90	2	1067	33	4	24	38	1.75
46727976--46728229	43	6.0	41	81	9	276	23	15	29	31	1.95
46727977--46728236	86	3.0	85	83	6	339	23	15	28	33	1.95
46727984--46728229	129	1.9	128	85	4	343	24	15	28	30	1.96
46737779--46737837	30	2.0	30	83	6	75	50	11	5	32	1.61
46742782--46742925	43	3.4	41	69	15	123	31	25	16	27	1.97
46743240--46743283	15	2.8	16	86	3	54	50	13	0	36	1.42
46747722--46747766	24	1.9	24	86	4	65	22	22	15	40	1.91
46748578--46748693	27	4.3	27	79	0	124	28	14	18	37	1.91
46770964--46771029	34	2.0	33	90	3	105	25	22	24	27	2.00
46771054--46771096	22	1.9	23	90	4	70	25	53	0	20	1.46
46772361--46772406	24	2.0	23	83	12	58	65	4	28	2	1.23
46773266--46773306	21	2.0	21	85	9	57	17	36	24	21	1.94
46773414--46773447	11	3.0	11	86	4	50	52	2	11	32	1.53
46775601--46775649	10	4.8	10	78	11	55	61	2	2	34	1.19
46782070--46782942	39	22.3	39	98	0	1642	25	28	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46786338--46786650	162	1.9	162	94	0	554	26	25	17	29	1.98
46791086--46791310	40	5.6	40	84	5	301	26	27	22	24	2.00
46791086--46791310	83	2.8	80	85	5	301	26	27	22	24	2.00
46791592--46791796	103	2.0	103	98	0	392	38	19	5	36	1.76
46796575--46796623	24	1.9	26	88	12	75	36	4	10	48	1.56
46797658--46797689	15	2.0	17	88	11	50	25	0	31	43	1.55
46811449--46811621	38	4.5	38	84	8	199	21	22	26	30	1.99
46811442--46811627	76	2.4	78	84	6	236	22	20	25	31	1.98
46813187--46813353	43	3.9	43	88	0	244	12	23	32	31	1.92
46813519--46813629	57	1.9	58	85	5	154	24	18	28	27	1.98
46818835--46819006	93	1.8	93	96	0	317	27	29	21	20	1.98
46818828--46819003	46	3.8	46	79	12	216	28	29	21	20	1.98
46829335--46829404	28	2.5	28	88	9	99	27	14	27	31	1.95
46830813--46830856	15	2.9	15	83	6	54	27	0	22	50	1.50
46830856--46830936	14	5.9	14	78	5	85	20	1	40	37	1.61
46831691--46831724	18	1.9	18	88	5	52	50	2	2	44	1.32
46832540--46832661	62	2.0	62	86	1	174	23	6	9	59	1.52
46839059--46839169	3	36.7	3	73	12	75	57	1	10	29	1.43
46839064--46839214	20	7.7	20	68	20	68	57	2	11	28	1.47
46839066--46839124	23	2.6	23	83	0	73	59	3	8	28	1.43
46839523--46839601	3	27.7	3	74	14	69	60	1	5	32	1.26
46841204--46842118	88	10.5	88	88	3	1233	27	21	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46842161--46842404	44	5.7	43	73	7	172	26	22	21	29	1.99
46842161--46842409	130	1.9	130	89	0	381	26	21	21	30	1.99
46849152--46849227	12	5.9	12	75	17	64	57	0	10	31	1.32
46849153--46849237	3	28.3	3	71	11	50	61	0	8	30	1.25
46849226--46849283	23	2.6	23	81	8	66	60	1	5	32	1.29
46849315--46849425	3	36.7	3	74	12	75	57	1	9	30	1.42
46849790--46849853	3	22.7	3	73	17	57	62	1	3	32	1.20
46849794--46849840	8	6.0	8	82	12	62	61	0	2	36	1.08
46849803--46849849	16	3.1	16	81	9	53	59	2	4	34	1.29
46855856--46855978	49	2.5	48	89	2	176	34	8	26	30	1.87
46855856--46856000	47	3.0	47	86	4	182	31	11	28	28	1.91
46855998--46856238	98	2.5	98	97	1	448	36	7	25	30	1.83
46855998--46856235	50	4.8	50	84	9	337	36	7	25	30	1.83
46856385--46856493	37	2.9	37	95	0	191	22	19	31	26	1.98
46857761--46858432	40	16.8	40	96	0	1200	23	22	28	25	1.99
46871154--46871465	85	3.7	85	82	4	319	25	14	27	33	1.94
46871154--46871477	43	7.6	43	79	6	320	24	14	28	33	1.94
46871154--46871427	128	2.1	129	82	5	317	24	13	28	33	1.94
46874408--46874581	95	1.8	94	81	6	217	22	25	20	31	1.98
46875196--46875246	20	2.7	18	82	14	59	37	21	0	41	1.54
46878467--46878724	40	6.4	40	88	0	381	34	27	15	22	1.94
46880204--46880244	18	2.2	19	86	4	57	63	4	0	31	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46885478--46885503	12	2.2	12	100	0	52	50	7	0	42	1.31
46885985--46886162	27	6.6	27	83	3	205	26	15	28	29	1.96
46885986--46886141	82	1.9	81	88	3	233	26	15	28	29	1.96
46885982--46886162	82	2.2	81	83	2	229	27	15	27	29	1.96
46894175--46894352	27	6.6	27	83	3	205	26	15	28	29	1.96
46894176--46894331	82	1.9	81	88	3	233	26	15	28	29	1.96
46894172--46894352	82	2.2	81	83	2	229	27	15	27	29	1.96
46912425--46912532	40	2.7	40	85	0	162	25	22	26	25	2.00
46923416--46923517	40	2.6	40	85	4	127	28	21	26	23	1.99
46930711--46930796	46	1.9	45	85	4	120	30	27	19	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284