genome.fa.s9.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  154  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51615640--51615758	29	4.2	29	78	10	120	27	29	11	31	1.92
51615642--51615754	58	2.0	58	84	5	149	26	30	12	30	1.93
51619365--51619391	13	2.1	13	100	0	54	29	14	14	40	1.86
51627456--51627537	26	3.2	26	64	19	73	25	14	28	31	1.95
51627418--51627683	50	5.3	50	80	4	266	23	16	27	33	1.96
51627451--51627681	101	2.3	101	82	3	270	24	17	26	32	1.97
51630304--51630452	43	3.1	51	74	14	118	31	28	16	23	1.96
51630362--51630448	43	2.0	43	90	0	138	26	33	18	21	1.96
51641267--51641296	15	2.1	15	93	6	53	13	6	23	56	1.60
51641716--51641740	13	1.9	13	100	0	50	32	60	0	8	1.26
51642137--51642185	24	2.0	24	96	0	89	20	34	22	22	1.97
51643155--51643324	46	3.7	45	84	7	202	21	30	20	28	1.98
51645786--51645830	22	2.2	22	84	11	60	40	2	2	55	1.24
51651268--51651342	36	2.1	36	82	5	89	36	1	2	60	1.20
51651599--51651638	12	3.3	12	78	0	53	32	35	10	22	1.87
51656752--51656944	40	4.8	40	87	2	273	26	29	20	23	1.99
51656759--51656946	79	2.4	80	86	5	281	27	28	20	23	1.99
51682576--51682753	27	6.6	27	83	5	189	29	27	15	28	1.96
51682601--51682751	82	1.9	81	87	4	223	28	27	15	27	1.96
51685722--51685917	98	2.0	98	100	0	392	34	17	25	22	1.95
51687529--51687578	24	2.1	23	82	17	59	36	18	26	20	1.95
51690811--51690843	13	2.6	13	95	4	59	57	6	0	36	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51698482--51698507	2	13.0	2	100	0	52	50	0	0	50	1.00
51705284--51705490	105	2.0	104	83	11	264	41	14	8	36	1.75
51705808--51705859	23	2.6	20	78	21	56	28	0	1	69	0.99
51708796--51708839	21	2.1	21	100	0	88	31	20	22	25	1.98
51719054--51719097	22	2.0	22	100	0	88	22	18	27	31	1.97
51723114--51723426	78	4.0	78	99	0	608	43	10	2	43	1.53
51725528--51725729	3	68.7	3	67	14	57	27	7	3	60	1.43
51729921--51730076	42	3.9	40	68	23	105	30	23	15	31	1.95
51742555--51742601	23	2.0	24	84	12	62	53	8	0	38	1.32
51744030--51744077	20	2.3	21	82	13	64	50	6	0	43	1.27
51744309--51744342	18	1.9	18	88	5	52	55	2	0	41	1.15
51748769--51748799	11	2.8	11	95	0	53	29	3	48	19	1.64
51750808--51750853	23	2.0	23	100	0	92	17	26	13	43	1.85
51754075--51754139	32	2.0	32	96	0	121	24	23	9	43	1.83
51755957--51756005	24	2.0	25	84	4	64	40	10	18	30	1.84
51759073--51759198	51	2.5	51	86	1	182	30	23	9	36	1.87
51760417--51760492	31	2.4	31	82	6	91	60	3	0	35	1.15
51760423--51760482	23	2.7	23	71	16	56	63	1	0	35	1.05
51781679--51783223	781	2.0	781	97	0	2928	32	16	10	39	1.84
51790396--51790499	26	4.0	26	94	0	172	35	23	7	33	1.83
51792964--51793146	79	2.3	81	83	7	223	24	22	27	24	2.00
51792965--51793148	40	4.6	40	82	9	207	24	22	28	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51793017--51793181	79	2.1	79	83	6	201	26	21	27	24	1.99
51802573--51802744	93	1.8	93	93	0	299	27	29	21	21	1.99
51802565--51802740	46	3.8	46	79	10	205	28	28	21	21	1.98
51804606--51804684	35	2.5	29	73	21	77	25	12	15	46	1.80
51812483--51812649	46	3.6	46	77	10	178	29	29	19	20	1.97
51812490--51812661	93	1.8	93	89	0	272	29	29	20	21	1.98
51815058--51815113	15	3.7	15	86	9	87	60	10	16	12	1.58
51818097--51818597	47	10.7	47	95	3	911	27	29	19	23	1.98
51819720--51819812	47	2.0	47	97	0	177	36	17	6	39	1.75
51825764--51825828	29	2.2	29	88	0	94	49	12	6	32	1.65
51827619--51827981	47	7.8	45	72	11	207	23	29	20	26	1.98
51827618--51827978	94	3.9	92	75	9	293	23	29	19	27	1.98
51830374--51830416	22	2.0	22	90	0	68	46	0	0	53	1.00
51833444--51833481	13	2.9	13	92	7	60	42	2	0	55	1.14
51833743--51833781	18	2.2	18	86	9	53	33	0	5	61	1.18
51833777--51833843	3	23.0	3	77	17	70	37	0	1	61	1.05
51833973--51834021	3	16.7	3	79	12	57	38	0	2	59	1.09
51833972--51834021	13	3.7	13	75	24	50	40	0	2	58	1.10
51833973--51834019	16	2.9	16	83	3	67	38	0	2	59	1.09
51833973--51834019	19	2.4	21	76	20	57	38	0	2	59	1.09
51839402--51839457	23	2.4	23	96	0	103	41	5	8	44	1.58
51842131--51842157	13	2.1	13	100	0	54	29	29	7	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51844018--51844101	39	2.1	40	86	2	116	34	20	21	23	1.97
51844600--51844640	15	2.9	14	85	3	55	17	0	36	46	1.48
51844539--51844748	22	9.8	21	67	13	97	21	1	33	43	1.61
51844595--51844749	7	21.7	7	72	10	82	20	0	36	42	1.57
51844846--51844872	14	1.9	14	100	0	54	18	0	37	44	1.50
51844893--51844944	21	2.5	21	84	9	70	19	0	32	48	1.49
51844908--51844972	21	3.0	21	82	6	60	15	1	41	41	1.56
51844933--51844965	14	2.3	15	89	5	50	15	3	45	36	1.61
51845886--51845993	41	2.6	41	80	0	117	40	12	15	31	1.84
51845914--51846010	41	2.4	41	83	0	122	44	13	16	25	1.84
51848781--51848820	22	1.9	22	85	10	57	10	25	7	57	1.57
51850006--51850084	37	2.1	37	90	0	122	25	31	18	24	1.98
51853955--51854077	43	2.9	42	86	1	156	25	17	28	28	1.98
51853955--51854080	42	3.0	42	86	1	162	24	17	27	30	1.97
51855682--51855747	34	1.9	34	84	6	89	27	24	27	21	1.99
51855682--51855812	29	4.3	29	75	4	109	25	23	27	23	2.00
51858833--51858999	46	3.5	47	85	8	198	20	22	14	42	1.88
51858877--51859014	46	3.0	46	90	4	208	22	23	14	39	1.91
51858833--51859009	92	1.9	95	84	6	245	21	22	13	42	1.88
51861178--51861290	58	1.9	62	92	7	198	38	8	1	51	1.44
51862971--51863015	14	2.8	17	70	19	51	31	20	17	31	1.96
51862974--51863050	36	2.3	32	86	10	102	35	22	14	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51863246--51863299	26	2.0	28	89	7	85	20	29	22	27	1.98
51863497--51863557	31	2.0	31	100	0	122	29	11	29	29	1.92
51872502--51872565	29	2.2	30	81	13	71	34	4	3	57	1.35
51873006--51873177	61	2.8	61	76	10	181	43	12	3	40	1.59
51874363--51874403	16	2.6	15	88	11	64	43	2	0	53	1.13
51881787--51881815	13	2.2	13	100	0	58	55	0	6	37	1.27
51883382--51883468	43	2.0	43	81	16	101	24	18	28	28	1.98
51887915--51888022	26	4.2	26	93	0	180	36	24	6	33	1.81
51893945--51894135	40	4.8	40	82	5	226	25	27	21	25	1.99
51893919--51894140	79	2.8	80	79	8	229	26	26	20	26	1.99
51899707--51899764	29	2.0	29	93	0	98	25	12	25	36	1.91
51902125--51902190	27	2.4	27	77	5	71	30	22	16	30	1.96
51908832--51908886	18	3.0	18	94	2	92	32	16	10	40	1.83
51917288--51917489	53	3.7	54	78	2	208	19	24	18	37	1.94
51917299--51917489	55	3.5	53	78	2	193	19	24	19	37	1.94
51927113--51927164	22	2.4	22	86	0	77	26	13	26	32	1.94
51932095--51932255	43	3.8	44	76	4	159	31	24	17	26	1.97
51933354--51933378	13	1.9	13	100	0	50	40	24	4	32	1.73
51937986--51938028	17	2.4	17	84	7	50	20	25	39	13	1.90
51937998--51938032	17	2.0	18	94	5	63	20	28	34	17	1.95
51938090--51938144	27	2.1	27	82	3	67	30	20	18	30	1.96
51938128--51938305	27	6.6	27	94	0	302	40	21	7	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51938128--51938405	27	10.3	27	82	6	287	39	21	9	29	1.85
51938423--51938485	27	2.3	27	81	5	74	39	15	15	28	1.89
51938874--51938937	22	2.9	22	79	9	76	20	25	23	31	1.98
51939096--51939203	27	4.0	26	83	5	126	19	22	21	37	1.95
51939095--51939201	54	2.0	53	85	1	142	20	22	19	37	1.94
51939321--51939455	6	22.0	6	65	15	62	18	18	13	49	1.79
51939324--51939388	25	2.6	25	82	0	76	18	20	13	47	1.82
51939349--51939416	19	3.6	19	78	11	86	17	19	14	48	1.81
51939344--51939416	37	2.0	37	91	0	119	19	17	15	47	1.82
51939349--51939430	37	2.2	37	86	0	101	18	19	13	48	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284