genome.fa.s9.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  150  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50214797--50214857	31	1.9	32	87	9	90	60	6	0	32	1.22
50215082--50215120	19	2.1	19	85	9	53	66	0	0	33	0.92
50216823--50217726	205	4.4	205	93	0	1470	28	21	18	31	1.97
50223991--50224051	31	1.9	32	87	9	90	60	6	0	32	1.22
50224107--50224171	27	2.5	26	80	11	73	61	0	7	30	1.24
50226406--50226661	55	4.8	51	77	10	230	22	25	16	36	1.94
50226454--50226654	108	1.8	110	88	4	309	22	25	17	34	1.96
50233820--50234040	40	5.5	40	85	6	295	25	27	23	23	2.00
50233820--50234040	83	2.7	79	86	4	291	25	27	23	23	2.00
50240571--50240711	71	2.0	70	98	0	264	36	21	9	31	1.86
50241931--50242111	40	4.5	40	79	7	204	24	26	24	24	2.00
50241956--50242110	83	1.9	83	88	0	238	23	27	24	23	2.00
50242699--50242777	40	2.0	39	92	4	133	40	18	2	37	1.65
50242757--50242804	25	1.9	25	82	0	60	35	27	4	33	1.76
50250204--50250355	40	3.8	39	82	7	180	32	25	19	23	1.97
50250174--50250355	80	2.3	79	83	6	217	30	25	19	23	1.98
50250309--50250427	59	2.0	59	100	0	238	35	24	15	25	1.94
50259762--50259956	49	3.9	49	81	2	228	29	25	17	27	1.98
50259762--50259954	100	1.9	100	89	0	296	30	24	18	27	1.98
50268826--50268903	38	2.1	38	95	0	138	32	5	20	42	1.74
50277031--50277071	22	2.0	21	86	13	59	63	14	0	21	1.30
50277273--50277320	6	8.0	6	90	0	69	77	4	2	16	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50278882--50278916	17	2.0	18	88	5	54	65	2	8	22	1.34
50284787--50284902	38	3.1	38	78	5	126	37	28	17	17	1.92
50289370--50289415	21	2.2	21	100	0	92	58	8	4	28	1.47
50291002--50291047	10	4.5	10	84	12	58	21	2	0	76	0.90
50291089--50291134	20	2.2	21	92	3	76	19	0	10	69	1.17
50291972--50292586	38	16.2	38	97	1	1162	20	12	50	16	1.78
50293146--50293249	44	2.5	41	81	7	102	32	24	17	25	1.96
50293179--50293264	41	2.1	42	91	2	138	29	22	17	31	1.96
50293230--50293499	68	4.0	68	92	0	452	28	24	23	24	2.00
50293565--50293674	43	2.5	43	83	4	132	26	20	19	34	1.96
50293517--50293666	44	3.4	43	78	6	151	22	20	21	35	1.96
50293819--50294023	44	4.7	43	71	14	116	20	21	20	36	1.96
50297713--50297754	21	2.0	21	100	0	84	42	9	28	19	1.82
50304578--50304607	12	2.5	12	94	0	51	46	0	6	46	1.29
50304686--50304732	16	2.7	17	80	9	51	63	4	0	31	1.13
50304689--50304737	17	2.7	19	78	15	59	61	8	0	30	1.25
50304951--50305036	3	29.3	3	73	19	60	66	1	3	29	1.16
50304956--50305036	18	4.4	18	77	13	76	66	1	3	28	1.16
50306223--50306295	29	2.6	29	80	10	87	60	2	1	35	1.20
50306223--50306294	28	2.6	27	84	8	90	59	2	1	36	1.20
50306604--50306680	28	2.7	28	80	6	75	40	3	0	55	1.18
50311898--50312073	46	3.8	46	78	15	191	21	20	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50311894--50312065	93	1.8	93	92	0	290	22	20	29	27	1.99
50315497--50315554	30	1.9	30	82	6	73	31	29	3	36	1.74
50326334--50326388	28	1.9	29	85	3	76	14	20	41	23	1.89
50328019--50328052	17	1.9	17	88	5	50	44	23	0	32	1.54
50333160--50333225	27	2.4	27	94	0	114	40	10	27	21	1.86
50340942--50341111	40	4.3	40	90	0	225	23	21	28	27	1.99
50340889--50341113	80	2.8	79	81	4	238	24	21	28	26	1.99
50340964--50341146	79	2.3	80	81	1	217	25	20	27	26	1.99
50349311--50349464	42	3.7	41	83	5	182	32	14	22	29	1.94
50362234--50362291	29	2.0	29	100	0	116	27	6	17	48	1.72
50362879--50363028	42	3.6	41	85	4	183	29	22	16	32	1.95
50366423--50366541	44	2.6	46	82	6	145	29	19	27	23	1.98
50368787--50368860	37	2.0	37	97	0	139	40	6	9	43	1.64
50368787--50368843	18	3.1	18	70	5	60	40	7	10	42	1.66
50370288--50370463	46	3.8	46	79	4	210	21	20	29	28	1.98
50375812--50375984	46	3.8	45	76	10	170	21	17	30	30	1.96
50379627--50379656	8	3.8	8	95	0	51	26	6	26	40	1.81
50381868--50382039	40	4.3	40	88	2	213	25	27	21	25	1.99
50381870--50382092	40	5.6	39	82	5	207	25	26	21	26	1.99
50382024--50382101	40	1.9	41	82	10	97	26	28	20	24	1.99
50383199--50383236	11	3.5	11	85	10	51	7	13	2	76	1.11
50387906--50388053	48	3.1	48	87	0	215	29	24	6	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50389324--50389376	27	2.0	27	85	3	72	39	20	11	28	1.87
50396420--50396465	20	2.3	21	78	17	53	56	6	15	21	1.61
50399115--50399158	23	1.9	23	86	9	63	22	4	0	72	1.02
50402838--50402882	19	2.4	18	78	7	54	31	11	13	44	1.78
50416268--50416346	37	2.1	37	90	0	122	25	31	18	24	1.98
50416465--50416751	47	6.1	47	91	1	423	27	30	9	31	1.89
50421399--50421461	24	2.7	23	85	7	81	33	28	15	22	1.95
50426378--50426424	23	2.0	23	95	0	85	23	25	17	34	1.96
50435962--50436171	40	5.3	40	90	0	305	25	20	27	26	1.99
50443099--50443171	6	11.8	6	72	16	60	46	13	20	19	1.83
50443110--50443171	25	2.5	25	86	0	88	43	14	22	19	1.87
50443347--50443550	98	2.1	98	85	0	273	34	27	17	19	1.95
50443870--50443982	27	4.2	27	87	4	165	27	19	15	37	1.92
50448082--50448239	43	3.7	42	79	7	158	27	21	22	28	1.99
50455712--50455823	43	2.6	43	82	10	131	22	18	26	32	1.97
50459166--50459219	27	2.0	27	85	0	72	38	7	14	38	1.75
50459459--50459648	50	3.8	49	83	3	211	24	17	27	30	1.97
50465613--50465659	24	2.0	24	84	15	64	40	23	4	31	1.74
50472297--50472431	27	5.0	27	84	7	168	29	11	20	38	1.88
50472297--50472424	53	2.4	54	89	3	188	30	10	17	40	1.84
50485255--50485313	19	3.1	19	95	0	100	27	25	23	23	2.00
50486750--50486784	15	2.3	15	90	0	52	14	25	31	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50494227--50494300	25	3.0	24	74	7	69	32	18	24	24	1.97
50494239--50494309	25	2.8	25	82	0	97	33	18	23	23	1.96
50494239--50494346	25	4.3	25	77	9	85	34	17	23	25	1.96
50497178--50497244	29	2.3	29	97	2	125	55	4	19	20	1.60
50498508--50498653	27	5.4	27	83	6	179	26	19	11	42	1.85
50498508--50498653	54	2.7	54	88	0	211	26	19	11	42	1.85
50498645--50498786	27	5.3	26	71	12	92	35	21	12	29	1.91
50498685--50498805	27	4.5	27	75	10	115	42	20	8	28	1.81
50498785--50498870	27	3.1	26	74	22	77	39	15	10	34	1.81
50498923--50498974	27	1.9	27	92	0	86	36	25	25	13	1.92
50498932--50499010	27	2.9	26	83	10	88	31	24	24	20	1.98
50499644--50499692	25	2.0	25	87	0	71	36	22	14	26	1.92
50499729--50499789	10	5.9	10	81	11	70	36	13	19	31	1.90
50499729--50499805	21	3.7	20	84	5	91	35	14	18	32	1.91
50502195--50502340	27	5.4	27	91	1	213	28	21	7	41	1.80
50502332--50502474	27	5.3	26	74	12	94	37	20	11	30	1.88
50502330--50502471	54	2.7	53	76	10	137	37	21	11	30	1.88
50502372--50502493	27	4.5	26	78	11	113	43	19	7	29	1.78
50502372--50502552	54	3.3	54	78	8	170	41	19	8	30	1.81
50502473--50502558	27	3.1	26	74	22	77	38	16	10	34	1.83
50502611--50502677	27	2.5	27	90	0	98	34	20	26	17	1.96
50502611--50502698	27	3.3	27	83	3	88	36	20	22	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50503034--50503550	258	2.0	258	98	0	1007	33	12	24	30	1.92
50503685--50503745	10	5.9	10	77	11	61	36	11	19	32	1.88
50503685--50503761	21	3.7	20	81	5	82	35	12	18	33	1.89
50508075--50509327	468	2.7	467	97	0	2382	41	11	11	35	1.77
50513224--50513446	79	2.8	78	81	9	256	25	27	21	25	2.00
50513224--50513446	39	5.7	40	85	8	257	25	27	21	25	2.00
50517052--50517170	60	2.0	60	96	0	220	32	15	15	35	1.90
50521616--50521885	40	6.7	40	79	11	291	25	28	21	24	1.99
50521630--50521793	85	1.9	85	96	0	301	26	29	19	25	1.99
50521618--50521884	85	3.3	79	82	10	290	24	28	21	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284