genome.fa.s9.2.7.7.80.10.50.1000.198.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  198  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66460417--66460450	15	2.3	15	90	10	52	47	41	0	11	1.40
66460634--66460681	16	2.9	16	84	6	60	45	29	2	22	1.64
66461465--66461562	41	2.4	42	84	8	137	30	21	16	31	1.95
66461902--66462391	3	159.7	3	67	14	137	58	3	8	29	1.44
66462024--66462097	13	6.0	13	75	9	59	62	2	4	31	1.28
66462144--66462187	22	2.0	22	81	0	52	56	6	4	31	1.46
66462194--66462233	16	2.4	17	87	4	55	62	5	7	25	1.42
66461898--66462312	214	1.9	213	95	0	740	58	3	8	29	1.44
66461899--66462391	214	2.3	212	88	4	699	58	3	8	29	1.44
66463023--66463066	8	5.2	8	82	17	54	84	2	0	13	0.73
66463411--66463460	22	2.2	23	89	3	75	18	6	42	34	1.74
66463773--66463893	45	2.7	45	93	0	206	25	24	20	28	1.99
66463993--66464322	44	7.5	44	70	7	233	18	25	21	34	1.96
66463989--66464368	44	8.7	43	67	8	178	20	24	21	34	1.96
66463980--66464370	87	4.5	87	89	0	577	19	24	21	34	1.96
66472403--66472443	9	4.7	9	84	3	57	43	14	19	21	1.87
66476315--66476418	3	34.0	3	74	9	59	57	1	8	31	1.40
66476384--66476430	14	3.1	15	84	6	60	59	4	6	29	1.41
66476492--66476633	3	47.3	3	66	15	55	58	2	9	30	1.41
66477559--66477604	24	1.9	24	95	0	83	21	19	45	13	1.84
66481004--66481065	30	2.0	31	96	3	117	40	12	8	38	1.73
66481836--66481899	19	3.5	18	70	14	51	57	6	1	34	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66481841--66481958	44	2.8	43	79	6	118	61	5	1	32	1.28
66482139--66482242	9	11.2	9	66	11	50	36	0	2	59	1.19
66483818--66483872	6	9.7	6	78	11	62	50	34	12	1	1.51
66483818--66483872	27	2.2	24	90	9	83	50	34	12	1	1.51
66485989--66486058	29	2.4	29	77	13	72	40	1	4	54	1.29
66488735--66488783	23	2.1	23	85	7	64	40	12	14	32	1.83
66489574--66489614	16	2.6	16	88	7	57	26	0	0	73	0.84
66497003--66497065	29	2.1	29	85	5	81	49	11	14	25	1.76
66498350--66498391	9	4.6	9	82	5	57	64	2	2	30	1.19
66498350--66498391	19	2.3	19	87	4	59	64	2	2	30	1.19
66498634--66498677	23	1.9	23	90	0	70	29	13	13	43	1.83
66518043--66518185	17	8.5	17	78	7	132	23	6	22	46	1.76
66518044--66518185	50	2.8	50	85	4	171	23	7	22	46	1.76
66518094--66518190	33	2.9	33	84	3	113	24	9	22	43	1.83
66519685--66519780	47	2.0	47	100	0	192	44	14	15	25	1.84
66519951--66520010	30	2.0	30	100	0	120	30	13	16	40	1.87
66526053--66526151	50	2.0	50	89	0	153	37	8	19	35	1.81
66526281--66526306	2	13.0	2	100	0	52	0	50	0	50	1.00
66534735--66534786	24	2.2	24	96	0	95	30	3	13	51	1.58
66534787--66534831	22	2.1	22	84	8	58	35	4	13	46	1.63
66548741--66548794	24	2.3	24	83	3	74	50	1	0	48	1.11
66550542--66550583	13	2.9	14	80	13	50	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66550546--66550582	16	2.3	16	86	13	58	59	0	0	40	0.97
66551419--66551463	22	2.0	23	83	12	58	44	2	0	53	1.13
66551427--66551468	22	2.0	21	86	13	59	42	2	0	54	1.13
66551566--66551676	37	3.0	37	100	0	222	32	29	16	21	1.95
66560341--66560397	10	6.2	9	76	15	55	64	0	3	31	1.10
66566656--66566688	13	2.5	13	90	0	57	66	3	0	30	1.06
66568434--66568466	14	2.2	16	89	10	52	42	3	0	54	1.15
66576729--66577083	178	2.0	178	96	0	647	35	14	25	24	1.94
66581225--66581688	45	10.5	44	66	10	185	26	17	25	30	1.98
66581128--66581747	265	2.3	265	87	1	929	27	18	24	29	1.98
66581624--66581724	45	2.2	46	81	6	118	25	14	26	32	1.95
66581128--66581747	133	4.7	133	89	1	877	27	18	24	29	1.98
66582106--66582356	132	1.9	132	83	1	324	27	17	19	35	1.94
66592560--66592586	8	3.4	8	100	0	54	22	0	0	77	0.76
66593258--66593296	19	2.1	19	95	0	69	51	10	5	33	1.58
66593869--66593909	19	2.2	19	87	12	59	46	0	24	29	1.53
66593857--66593896	13	3.2	13	80	19	50	50	0	25	25	1.50
66594941--66595034	22	4.3	22	73	15	88	23	2	28	45	1.64
66595794--66595946	40	3.9	40	89	6	224	24	25	19	30	1.98
66600744--66600791	22	2.2	22	88	0	69	14	12	14	58	1.64
66603415--66603476	31	2.0	31	90	0	97	29	22	6	41	1.78
66603689--66603738	24	2.1	24	84	0	64	30	2	2	66	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66605573--66605671	30	3.3	30	97	0	189	26	51	6	16	1.67
66606152--66606203	24	2.2	23	83	10	61	36	3	0	59	1.16
66606219--66606287	25	2.8	25	82	4	88	34	7	2	55	1.43
66606246--66606355	29	4.0	28	71	15	88	30	6	4	59	1.43
66606306--66606368	25	2.5	24	84	7	72	30	4	6	58	1.43
66606430--66606485	25	2.3	24	79	14	62	37	16	3	42	1.65
66607521--66607575	27	2.0	27	100	0	110	36	21	18	23	1.95
66610339--66610638	151	2.0	151	93	0	510	38	16	25	20	1.92
66615701--66616164	232	2.0	232	100	0	928	36	19	19	24	1.95
66617983--66618013	11	2.7	11	95	5	53	90	0	9	0	0.46
66619558--66619717	87	1.8	87	86	0	230	28	16	19	35	1.94
66619558--66619763	87	2.4	86	82	4	225	30	13	19	36	1.90
66620401--66620496	30	3.2	30	93	0	156	26	46	6	20	1.74
66621053--66621112	25	2.4	26	80	8	79	36	5	1	56	1.31
66621070--66621179	29	4.0	28	73	15	97	30	6	4	58	1.43
66621052--66621227	80	2.2	82	79	7	189	32	6	4	56	1.44
66621130--66621192	25	2.5	24	84	7	72	30	4	6	58	1.43
66621254--66621309	25	2.3	24	79	14	62	37	16	3	42	1.65
66629431--66629467	20	1.9	20	88	5	58	40	0	8	51	1.32
66631628--66631763	46	3.0	46	90	2	193	38	14	24	22	1.91
66637484--66637623	73	1.9	74	83	1	183	32	19	17	31	1.95
66638711--66638755	23	1.9	24	90	4	74	35	0	4	60	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66638813--66638880	31	2.2	31	81	5	75	61	5	1	30	1.28
66643957--66643996	21	1.9	20	85	10	53	40	7	7	45	1.61
66644342--66644411	33	2.1	33	100	0	140	17	22	5	54	1.64
66645884--66645982	49	2.0	50	82	9	121	47	4	11	37	1.58
66652974--66653028	24	2.3	24	81	6	58	32	30	1	34	1.69
66654909--66654966	27	2.1	27	87	0	80	29	13	5	51	1.63
66656731--66656779	21	2.3	21	85	0	71	44	12	14	28	1.81
66660727--66660756	15	2.0	15	93	0	51	23	0	43	33	1.54
66663274--66663457	30	6.1	30	95	0	314	26	23	5	43	1.77
66666638--66666731	30	3.1	30	96	1	170	26	26	6	40	1.80
66666648--66666724	15	5.1	15	69	12	68	27	23	7	41	1.81
66674210--66674245	18	2.0	18	94	0	63	47	16	8	27	1.75
66674378--66674650	39	7.0	39	96	1	442	31	28	20	19	1.97
66675504--66675549	24	1.9	24	100	0	92	34	19	6	39	1.78
66675725--66675754	7	4.3	7	100	0	60	46	40	0	13	1.43
66679179--66679318	46	3.0	46	87	2	192	20	21	15	42	1.89
66679307--66679331	13	1.9	13	100	0	50	16	28	24	32	1.96
66682617--66682749	48	2.8	47	82	4	149	30	25	18	24	1.98
66685476--66685525	21	2.4	21	80	9	59	18	30	38	14	1.89
66686229--66686265	6	6.0	6	93	6	65	81	0	2	16	0.81
66686229--66686265	19	2.0	18	94	5	65	81	0	2	16	0.81
66689562--66689595	16	2.1	16	89	10	52	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66690175--66690199	7	3.6	7	100	0	50	44	12	0	44	1.41
66690543--66690601	31	1.9	31	82	6	75	37	0	8	54	1.31
66691435--66691480	4	11.8	4	82	13	60	21	2	0	76	0.90
66691433--66691483	24	2.1	24	100	0	102	19	5	0	74	1.02
66692123--66692204	38	2.2	38	97	2	157	46	14	20	18	1.84
66692909--66692988	9	8.9	9	80	16	87	33	1	1	63	1.10
66692901--66692988	46	1.9	46	90	4	142	32	1	2	63	1.14
66692910--66692988	8	8.9	8	80	12	59	34	1	1	63	1.11
66693940--66694033	30	3.1	30	90	1	143	25	24	6	43	1.78
66693950--66694027	15	5.2	15	67	11	61	25	21	7	44	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284