genome.fa.s9.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  182  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61559120--61559257	36	3.9	36	83	2	172	28	17	11	42	1.84
61560609--61560671	29	2.2	29	82	0	72	44	14	6	34	1.70
61563210--61563326	48	2.4	48	86	0	153	22	13	23	41	1.89
61565718--61565786	34	2.0	34	100	0	138	27	11	23	37	1.89
61568924--61568974	20	2.5	20	83	6	57	62	9	0	27	1.26
61569631--61569663	16	2.1	16	100	0	66	48	0	0	51	1.00
61569615--61569678	13	4.6	14	74	18	62	46	0	0	53	1.00
61569615--61569707	17	5.5	16	70	24	57	46	0	0	53	1.00
61569675--61569710	19	1.9	18	88	5	54	41	0	0	58	0.98
61569899--61569934	14	2.6	14	90	0	54	63	2	5	27	1.30
61571169--61571208	21	2.0	21	90	5	64	22	22	40	15	1.91
61572371--61572640	46	5.8	48	76	11	240	23	28	18	28	1.98
61572420--61572640	94	2.3	94	84	6	277	23	30	18	27	1.98
61579698--61579727	16	1.9	16	93	6	53	33	23	0	43	1.54
61583304--61583436	49	2.7	50	79	10	148	24	30	18	26	1.98
61592305--61592475	43	4.0	43	78	8	177	29	24	18	26	1.98
61592309--61592467	86	1.9	85	84	6	214	29	23	18	27	1.98
61598922--61598970	24	1.9	26	88	12	75	48	10	4	36	1.56
61599299--61599331	17	1.9	17	100	0	66	24	21	18	36	1.95
61600109--61600146	20	2.0	19	90	10	60	23	26	0	50	1.50
61604409--61604505	39	2.4	42	84	6	128	31	1	10	56	1.40
61604438--61604506	19	3.6	19	65	18	52	36	0	8	55	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61604932--61605002	20	3.7	20	69	16	60	63	1	4	30	1.22
61604931--61605006	39	1.9	39	82	10	93	64	1	3	30	1.20
61605029--61605114	26	3.4	26	88	4	115	58	11	2	27	1.46
61605040--61605091	14	3.9	14	77	10	63	55	11	1	30	1.46
61605280--61605346	18	3.7	18	82	4	71	28	4	2	64	1.28
61605288--61605404	57	2.0	58	81	4	139	32	2	2	62	1.22
61605366--61605403	19	2.0	20	89	5	60	34	0	2	63	1.09
61605288--61605432	9	15.4	9	65	17	55	31	2	2	63	1.20
61605526--61605689	87	1.9	87	84	2	222	34	9	19	36	1.85
61612510--61612670	55	2.9	55	87	2	234	26	27	20	25	1.99
61616862--61617053	40	4.8	40	92	1	226	27	27	21	23	1.99
61616833--61617052	80	2.8	80	81	4	248	28	27	20	23	1.99
61627127--61627309	40	4.6	40	98	0	330	30	24	22	22	1.99
61627054--61627309	80	3.2	80	88	1	309	29	25	21	23	1.99
61634393--61634531	55	2.5	55	90	0	224	28	27	19	25	1.99
61634393--61634569	55	3.2	54	85	2	158	27	26	19	25	1.99
61637341--61637380	18	2.3	17	86	4	53	75	0	20	5	0.99
61640783--61640821	20	2.0	20	85	10	53	15	41	23	20	1.90
61647024--61647298	46	5.9	47	77	9	251	27	19	30	22	1.98
61653447--61653607	46	3.5	44	81	8	137	28	17	28	25	1.97
61653531--61653713	48	3.8	48	74	13	160	27	18	28	25	1.98
61668818--61668851	15	2.3	15	89	0	50	41	0	17	41	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61673007--61673237	50	4.8	49	83	10	264	25	29	18	27	1.98
61673058--61673321	94	2.8	94	77	12	263	23	29	18	28	1.98
61673941--61673999	30	2.0	30	100	0	118	20	25	3	50	1.63
61677032--61677080	22	2.2	22	82	7	55	28	30	18	22	1.97
61677048--61677104	24	2.5	23	80	8	62	26	29	15	28	1.96
61680705--61680790	38	2.2	39	83	6	113	34	2	11	51	1.51
61691739--61691914	46	3.8	46	79	4	201	21	20	28	28	1.98
61691735--61691906	93	1.8	93	92	0	290	21	20	29	27	1.98
61693183--61693482	150	2.0	150	100	0	600	22	20	26	30	1.98
61694976--61695063	30	3.0	30	78	8	90	10	18	15	55	1.68
61694985--61695064	15	5.4	15	77	7	83	10	18	13	57	1.64
61697449--61697624	46	3.8	46	76	10	187	22	21	26	28	1.99
61697445--61697616	93	1.8	93	89	0	272	22	22	27	27	1.99
61702581--61702816	117	2.0	117	94	0	409	30	5	24	39	1.78
61703348--61703651	46	6.4	46	73	10	188	28	20	28	22	1.98
61706212--61706361	27	5.5	27	92	3	228	28	12	28	30	1.93
61706212--61706361	55	2.7	55	92	0	237	28	12	28	30	1.93
61715597--61716519	6	153.8	6	98	0	1783	16	33	33	16	1.91
61716509--61716574	12	5.5	12	71	12	55	10	28	30	30	1.90
61716508--61716549	18	2.3	19	84	12	61	14	28	26	30	1.95
61717216--61717243	14	2.0	14	100	0	56	35	0	21	42	1.53
61717218--61717251	14	2.4	14	90	0	50	41	2	17	38	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61719506--61719603	32	3.1	32	76	8	110	19	24	34	21	1.96
61719500--61719589	31	2.8	32	81	5	103	22	25	33	18	1.97
61733824--61733850	12	2.2	12	100	0	54	7	33	0	59	1.25
61736037--61736221	40	4.6	40	81	3	228	22	27	24	25	2.00
61743242--61743466	40	5.6	40	81	2	254	22	26	24	26	2.00
61743206--61743466	80	3.3	80	80	3	267	22	26	24	26	2.00
61747277--61747734	116	4.1	108	78	12	361	57	13	2	27	1.48
61748013--61748060	24	2.0	24	84	8	62	22	14	0	62	1.32
61753411--61753507	40	2.5	40	81	3	117	37	36	12	14	1.84
61766829--61767013	79	2.3	81	84	7	236	24	22	27	25	2.00
61766830--61767013	40	4.6	40	83	9	216	24	22	27	25	2.00
61766882--61767046	79	2.1	79	84	6	210	26	21	27	25	1.99
61768487--61768648	83	2.0	83	88	2	245	18	40	23	17	1.91
61772157--61773100	50	18.9	50	97	0	1757	28	19	29	22	1.98
61777010--61777117	26	4.2	26	92	0	180	36	25	7	31	1.83
61783589--61783636	24	2.0	23	84	4	60	43	18	2	35	1.62
61783924--61783948	12	2.1	12	100	0	50	12	32	32	24	1.91
61803271--61803354	23	3.7	23	91	1	134	34	20	22	22	1.97
61805936--61805987	26	2.0	26	96	0	95	40	19	9	30	1.83
61813323--61813347	13	1.9	13	100	0	50	32	4	24	40	1.73
61819300--61819405	35	3.0	35	81	0	131	25	7	21	45	1.78
61822778--61822868	46	2.0	46	88	0	137	27	31	7	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61822842--61822985	47	3.1	46	89	2	207	27	31	10	31	1.90
61834079--61834122	22	2.0	22	95	0	79	25	9	15	50	1.74
61837670--61837843	46	3.7	46	75	8	165	28	21	28	20	1.98
61837669--61837887	46	4.8	44	72	10	136	27	19	29	22	1.98
61841166--61841313	38	3.9	39	81	4	151	30	27	25	16	1.96
61842457--61842490	17	1.9	17	88	5	50	58	8	0	32	1.29
61842820--61843007	102	1.8	102	82	7	238	48	11	11	28	1.74
61858830--61858865	14	2.6	14	95	0	63	25	22	13	38	1.91
61860092--61860243	76	2.0	76	98	0	295	25	24	21	29	1.99
61867874--61868047	59	2.9	59	87	0	258	23	13	31	31	1.93
61873154--61873196	14	3.0	14	75	3	50	30	13	0	55	1.39
61873154--61873229	27	2.7	27	79	15	84	26	13	0	60	1.33
61876458--61876529	29	2.5	29	88	4	101	36	18	1	44	1.58
61883861--61883899	20	2.0	20	84	0	51	33	10	7	48	1.66
61894998--61895057	19	3.2	18	81	11	68	30	0	1	68	0.99
61894998--61895043	12	3.8	12	88	11	76	26	0	0	73	0.83
61898711--61898764	23	2.3	23	73	17	58	46	16	0	37	1.48
61902142--61902224	29	2.8	30	90	3	132	25	27	10	36	1.89
61902203--61902293	29	3.1	29	80	9	105	21	27	15	35	1.94
61904471--61904520	21	2.4	21	89	0	73	20	22	20	38	1.94
61915124--61915154	8	3.9	8	91	0	53	54	0	6	38	1.26
61915124--61915154	16	1.9	16	100	0	62	54	0	6	38	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61920957--61920997	22	1.9	22	90	5	66	12	43	26	17	1.84
61922642--61922704	25	2.5	25	78	0	72	30	19	22	28	1.98
61924721--61924834	43	2.6	45	80	8	128	34	26	15	23	1.95
61940291--61940319	12	2.3	13	94	5	51	27	0	0	72	0.85
61947261--61947492	27	8.6	27	82	2	277	28	15	27	29	1.96
61955065--61955108	18	2.4	18	92	0	70	45	22	22	9	1.80
61962640--61962816	27	6.5	27	82	6	196	27	15	28	29	1.96
61962640--61962816	54	3.3	55	83	5	225	27	15	28	29	1.96
61962641--61962796	82	1.9	81	86	3	224	26	15	28	28	1.96
61962637--61962816	82	2.2	81	82	3	218	27	15	27	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284