genome.fa.s9.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  109  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35752504--35752675	46	3.7	46	79	13	208	29	29	19	21	1.98
35752512--35752683	93	1.8	93	92	0	290	29	29	20	21	1.98
35755934--35756032	51	1.9	51	97	0	189	23	37	12	27	1.90
35757854--35758057	45	4.6	45	85	3	254	26	28	23	22	1.99
35759765--35759817	27	2.0	27	85	3	72	39	20	11	28	1.87
35765472--35765496	2	12.5	2	100	0	50	48	0	0	52	1.00
35765684--35765798	41	2.8	41	95	0	203	29	20	22	26	1.99
35766013--35766076	33	2.0	32	90	3	101	26	9	25	39	1.86
35766020--35766093	33	2.3	33	80	2	87	28	8	25	37	1.84
35782394--35782432	14	2.7	14	88	4	51	43	2	15	38	1.60
35783227--35783528	146	2.1	146	98	0	586	42	7	4	45	1.54
35783518--35783564	13	3.4	14	76	8	51	48	0	0	51	1.00
35785084--35785139	19	2.9	19	82	10	53	55	3	0	41	1.17
35786900--35786930	14	2.2	14	94	0	53	0	16	38	45	1.47
35786982--35787041	29	2.1	29	96	0	111	21	13	25	40	1.89
35787714--35787765	24	2.2	24	92	0	86	48	11	3	36	1.58
35792022--35792213	43	4.5	43	84	0	222	30	29	16	23	1.96
35792022--35792213	86	2.2	86	84	0	249	30	29	16	23	1.96
35795491--35795711	48	4.6	48	83	4	257	29	18	26	25	1.98
35795485--35795711	96	2.4	96	85	3	287	29	18	26	25	1.98
35802480--35802627	43	3.4	43	81	6	167	27	16	23	32	1.96
35803647--35803671	13	1.9	13	100	0	50	24	24	24	28	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35810080--35810239	27	5.9	27	80	7	155	30	28	16	25	1.97
35810084--35810239	82	1.9	81	85	3	215	28	28	16	25	1.97
35812437--35812478	16	2.6	16	85	7	59	52	0	2	45	1.13
35819246--35819428	79	2.3	81	81	9	216	25	20	26	27	1.99
35819246--35819428	40	4.6	41	83	6	209	25	20	26	27	1.99
35819297--35819461	79	2.1	79	81	8	185	26	19	26	27	1.99
35821819--35821863	22	2.0	22	83	8	56	55	2	4	37	1.32
35821997--35822031	12	3.2	11	88	11	54	65	0	0	34	0.93
35824733--35824877	40	3.6	40	88	1	193	24	22	28	24	1.99
35824733--35824904	80	2.2	80	82	3	204	23	20	28	27	1.99
35826731--35826831	43	2.3	43	84	3	123	28	14	22	33	1.94
35828954--35829172	48	4.6	48	88	5	266	28	29	17	25	1.97
35829002--35829173	48	3.6	48	94	1	292	27	29	17	25	1.97
35836111--35836184	29	2.6	29	86	4	96	27	16	31	25	1.96
35842684--35842712	12	2.4	12	100	0	58	24	41	6	27	1.80
35858923--35859092	93	1.8	92	89	1	268	28	27	20	23	1.99
35858918--35859100	45	4.0	45	72	15	142	29	26	19	24	1.98
35861570--35861671	48	2.1	48	87	0	141	29	15	24	30	1.96
35869181--35869313	48	2.8	48	81	2	160	25	15	28	30	1.96
35869286--35869398	43	2.7	42	76	13	106	26	19	27	26	1.99
35871287--35871432	42	3.4	44	80	4	154	25	17	24	32	1.96
35873936--35873980	20	2.2	20	96	0	81	31	40	20	8	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35878858--35879010	42	3.6	42	88	0	171	32	24	14	28	1.94
35878890--35879046	42	3.6	42	85	5	152	31	24	15	28	1.95
35878976--35879098	48	2.6	49	82	2	133	29	26	17	26	1.98
35883965--35884174	39	5.4	39	77	1	188	32	4	20	43	1.71
35883976--35884126	77	1.9	78	87	1	223	31	4	19	44	1.71
35883978--35884160	78	2.4	77	83	0	222	32	4	19	43	1.72
35886279--35886429	44	3.5	44	73	14	136	29	24	18	27	1.98
35893778--35893933	43	3.7	41	80	11	147	34	25	14	25	1.94
35903281--35903463	79	2.3	81	82	9	225	25	20	26	27	1.99
35903281--35903463	40	4.6	41	83	6	218	25	20	26	27	1.99
35903332--35903496	79	2.1	79	82	8	194	26	19	26	27	1.99
35905853--35905897	22	2.0	22	83	8	56	55	2	4	37	1.32
35906032--35906066	12	3.2	11	88	11	54	65	0	0	34	0.93
35908778--35908929	40	3.8	41	89	3	211	24	21	28	25	1.99
35908778--35908949	80	2.2	80	84	3	213	23	20	27	27	1.99
35910776--35910876	43	2.3	43	83	3	114	29	14	21	33	1.94
35913013--35913231	48	4.6	48	88	5	266	28	29	17	25	1.97
35913061--35913232	48	3.6	48	94	1	292	27	29	17	25	1.97
35926745--35926773	12	2.4	12	100	0	58	24	41	6	27	1.80
35942987--35943155	93	1.8	92	89	1	266	28	27	20	23	1.99
35942981--35943163	45	4.0	45	71	15	133	30	26	19	24	1.98
35945633--35945731	48	2.1	48	86	0	135	29	16	24	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35953244--35953376	48	2.8	48	82	2	169	26	15	27	30	1.96
35953349--35953461	43	2.7	42	76	13	106	26	19	27	26	1.99
35955348--35955493	42	3.4	44	80	4	154	25	17	24	32	1.96
35957998--35958042	20	2.2	20	96	0	81	31	40	20	8	1.83
35962922--35963074	42	3.6	42	89	0	180	32	25	14	28	1.95
35962954--35963110	42	3.6	42	86	5	161	31	25	15	28	1.96
35963040--35963162	48	2.6	49	84	2	142	28	27	17	26	1.98
35968030--35968239	39	5.4	39	77	1	188	32	4	20	43	1.71
35968041--35968191	77	1.9	78	87	1	223	31	4	19	44	1.71
35968043--35968225	78	2.4	77	83	0	222	32	4	19	43	1.72
35970344--35970494	44	3.5	44	73	14	136	29	24	18	27	1.98
35974656--35974801	40	3.7	39	78	10	136	23	21	28	26	1.99
35974740--35975118	190	2.0	190	99	0	749	29	17	25	27	1.97
35981062--35981209	43	3.5	41	79	8	129	33	25	16	25	1.96
36002311--36002358	18	2.7	18	83	6	62	45	6	0	47	1.27
36002556--36002611	25	2.3	25	75	3	60	50	1	0	48	1.11
36002567--36002606	12	3.2	12	89	6	62	37	0	0	62	0.95
36002567--36002605	13	3.1	13	92	3	62	35	0	0	64	0.94
36007283--36007312	12	2.5	12	100	0	60	23	16	6	53	1.66
36010004--36010089	43	2.0	43	86	4	120	22	17	31	29	1.96
36018290--36018384	27	3.5	26	87	5	109	37	16	18	26	1.92
36021252--36021516	27	9.8	27	87	2	345	33	18	21	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36027359--36027718	27	13.3	27	86	0	461	35	18	20	25	1.95
36027706--36027757	27	1.9	27	88	0	77	28	19	19	32	1.96
36032528--36032791	81	3.3	81	82	5	286	42	20	8	28	1.82
36032519--36032751	27	8.7	27	79	9	212	42	21	8	28	1.81
36032555--36032790	107	2.2	107	83	9	286	41	21	9	27	1.83
36032519--36032804	27	10.7	27	76	9	194	41	20	9	28	1.84
36036940--36037202	27	9.7	26	82	6	249	42	19	7	29	1.80
36036940--36037179	54	4.4	54	84	4	279	42	21	7	28	1.79
36036933--36037207	81	3.4	81	84	2	329	41	21	8	29	1.81
36037159--36037219	27	2.3	27	85	5	79	39	13	16	31	1.87
36038004--36038066	32	2.0	32	87	6	92	12	15	28	42	1.84
36042623--36042786	81	2.0	81	96	0	301	34	25	6	33	1.81
36052189--36052332	43	3.3	43	78	10	143	34	28	15	21	1.94
36071080--36071142	30	2.1	30	84	0	81	14	19	14	52	1.75
36074158--36074272	29	4.0	29	80	6	119	28	28	13	28	1.95
36074149--36074259	58	1.9	57	85	1	150	27	29	14	27	1.95
36074499--36074532	15	2.3	15	89	0	50	5	17	17	58	1.57
36082859--36082957	49	2.0	49	100	0	198	30	31	20	18	1.96
36083274--36083396	60	2.0	60	98	0	237	28	18	14	38	1.90
36083751--36083902	76	2.0	76	94	0	268	34	28	7	28	1.85
36094268--36094494	47	4.9	48	75	10	193	22	30	18	28	1.97
36097421--36097566	43	3.4	42	81	4	141	34	24	15	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36098892--36098927	18	2.0	18	94	0	63	36	5	19	38	1.75
36105056--36105206	43	3.6	42	76	7	146	41	20	15	21	1.90
36105245--36105374	42	3.1	42	78	4	136	43	15	16	24	1.86
36105427--36105467	22	1.9	21	85	5	55	34	24	0	41	1.55
36105390--36105582	100	1.9	100	97	0	368	39	19	5	35	1.74
36115326--36115374	22	2.3	21	86	10	64	69	10	10	10	1.37
36118246--36118276	9	3.6	9	91	8	55	54	19	12	12	1.70
36118244--36118273	8	3.6	8	91	8	51	53	26	10	10	1.66
36118244--36118276	17	1.9	17	100	0	66	51	24	12	12	1.73
36119963--36120003	21	2.0	20	95	4	73	4	4	48	41	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284