genome.fa.s9.2.7.7.80.10.50.1000.218.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  218  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72435044--72435090	6	7.5	6	86	9	58	76	6	0	17	0.98
72435047--72435085	20	2.0	20	89	0	60	71	7	0	20	1.10
72435110--72435186	9	8.6	9	88	0	109	25	11	20	41	1.86
72446747--72447144	54	7.4	54	88	2	541	27	21	9	41	1.84
72446747--72447140	27	14.6	27	85	5	474	28	21	9	41	1.84
72447161--72447294	27	5.0	27	83	0	160	34	17	20	27	1.95
72447153--72447292	54	2.6	54	87	2	183	35	16	19	28	1.93
72447493--72447575	27	3.1	26	86	5	94	20	21	20	37	1.95
72447670--72447721	22	2.4	22	80	0	59	23	23	19	34	1.96
72447886--72447959	27	2.8	27	83	6	80	18	24	20	36	1.95
72448077--72448154	6	12.8	6	76	12	79	16	17	15	50	1.79
72448077--72448154	31	2.6	30	89	2	111	16	17	15	50	1.79
72448819--72449168	73	4.8	73	96	1	623	36	21	16	26	1.93
72450641--72450816	46	3.8	46	79	12	207	21	19	28	30	1.98
72450638--72450809	93	1.8	93	94	0	308	21	20	29	29	1.98
72464814--72465088	27	10.3	26	73	10	101	38	24	7	29	1.83
72464873--72464944	27	2.7	27	93	2	119	29	25	9	36	1.88
72464923--72465087	54	3.1	54	81	3	192	41	21	6	29	1.79
72464937--72465116	27	6.7	28	80	8	171	43	20	6	28	1.77
72464937--72465116	80	2.2	80	85	3	229	43	20	6	28	1.77
72464937--72465114	53	3.3	53	82	6	209	44	20	6	28	1.77
72464989--72465320	27	12.3	27	83	5	280	37	18	16	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72465080--72465321	27	9.0	27	86	0	313	36	19	19	24	1.95
72465524--72465592	25	2.8	25	82	6	79	28	24	21	24	1.99
72465534--72465604	24	2.9	25	81	10	76	29	23	21	25	1.99
72466464--72466745	41	6.8	41	78	10	297	48	5	6	39	1.52
72466464--72466759	83	3.6	83	100	0	592	48	5	6	39	1.53
72466749--72466787	20	2.0	20	85	5	53	58	5	7	28	1.47
72467064--72467101	17	2.3	16	90	4	58	57	5	2	34	1.35
72467149--72467201	16	3.3	16	76	5	54	73	1	0	24	0.93
72468436--72468525	27	3.2	28	81	7	94	32	20	24	23	1.98
72468619--72468710	28	3.3	28	93	1	150	31	5	27	35	1.79
72475037--72475126	27	3.2	28	81	7	94	32	20	24	23	1.98
72476989--72477053	21	2.9	21	79	9	67	60	3	0	36	1.13
72477105--72477146	15	2.6	16	77	11	50	64	2	9	23	1.35
72478509--72478672	42	3.7	43	86	8	206	29	27	14	29	1.95
72478592--72478762	47	3.6	48	81	6	179	30	26	14	28	1.95
72478791--72478970	31	5.8	31	87	0	261	27	27	18	26	1.98
72478791--72478970	93	1.9	93	95	0	324	27	27	18	26	1.98
72481073--72481348	40	6.9	40	79	0	228	36	16	28	18	1.93
72481079--72481348	80	3.4	79	80	1	261	36	16	28	18	1.93
72481104--72481348	120	2.0	120	84	0	319	36	16	28	18	1.92
72483187--72483231	22	2.0	22	83	8	56	40	4	0	55	1.20
72486813--72486858	23	2.0	22	84	12	58	4	34	0	60	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72491702--72491738	19	1.9	18	89	10	56	16	13	40	29	1.86
72502980--72503017	20	1.9	20	88	0	58	47	10	13	28	1.76
72507185--72507247	12	4.8	13	75	13	67	79	1	0	19	0.82
72507185--72507247	7	8.6	7	76	13	56	79	1	0	19	0.82
72507182--72507247	13	5.1	13	78	14	64	77	3	0	19	0.90
72507198--72507222	8	3.1	8	100	0	50	76	0	0	24	0.80
72507220--72507246	6	4.5	6	100	0	54	85	0	0	14	0.61
72507220--72507257	18	2.1	18	85	9	51	84	0	5	10	0.77
72508310--72508334	13	1.9	13	100	0	50	56	8	8	28	1.57
72508391--72508550	63	2.5	64	84	1	205	31	17	13	37	1.89
72509152--72509247	44	2.2	46	81	9	110	27	16	27	29	1.97
72508749--72509317	180	3.2	176	88	4	820	29	18	24	28	1.98
72513658--72513845	40	4.7	40	96	0	331	24	19	27	28	1.99
72513658--72513881	80	2.8	80	88	0	250	24	20	27	28	1.99
72513658--72513881	120	1.9	120	84	1	306	24	20	27	28	1.99
72516110--72516220	57	2.0	56	87	1	159	25	14	28	30	1.94
72521215--72521398	40	4.6	40	98	0	350	22	20	28	28	1.99
72521215--72521434	120	1.8	120	86	1	316	22	20	28	28	1.99
72526628--72526742	31	3.7	31	97	1	214	27	26	17	27	1.98
72526766--72526857	42	2.2	42	98	0	175	32	20	15	31	1.94
72527005--72527074	25	2.8	25	91	4	106	24	24	27	24	2.00
72527884--72527977	27	3.5	26	80	7	91	20	23	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72528029--72528207	27	6.6	27	77	7	137	32	10	17	39	1.84
72528119--72528248	27	4.8	27	75	4	111	29	12	18	40	1.87
72528247--72528417	27	6.3	27	86	2	200	39	8	24	27	1.85
72538986--72539205	40	5.6	40	80	7	243	25	25	24	25	2.00
72541431--72541632	42	4.8	42	75	8	185	16	32	32	18	1.93
72541431--72541644	43	5.0	43	78	6	211	17	32	33	17	1.93
72542465--72542511	24	2.0	24	87	8	69	21	34	36	8	1.84
72552661--72552704	22	2.0	22	100	0	88	31	4	13	50	1.62
72553693--72553768	37	2.1	37	83	14	95	25	7	23	43	1.80
72564755--72564797	21	2.1	21	86	4	61	25	4	20	48	1.69
72568090--72568192	43	2.4	42	80	4	109	28	17	22	32	1.96
72579785--72579830	20	2.3	20	100	0	92	19	30	10	39	1.86
72594162--72594337	46	3.8	46	73	11	153	21	19	28	30	1.98
72595553--72595913	48	7.6	47	74	14	189	24	28	18	27	1.98
72595505--72595917	46	8.7	47	76	11	289	23	29	19	27	1.98
72599524--72599734	28	7.5	28	73	8	185	24	33	15	27	1.95
72599519--72599747	86	2.7	84	91	2	352	25	33	15	25	1.95
72599832--72599868	19	1.9	19	94	0	65	13	35	18	32	1.90
72599966--72600008	16	2.7	16	85	0	59	9	13	18	58	1.62
72614242--72614445	40	5.1	40	87	4	263	25	29	23	21	1.99
72617978--72618215	29	8.3	29	75	3	207	26	31	14	27	1.95
72617978--72618215	57	4.2	57	74	6	214	26	31	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72617995--72618215	86	2.6	86	90	0	345	25	31	14	28	1.94
72622946--72623009	31	2.1	31	93	0	110	23	23	15	37	1.93
72623203--72623345	24	6.0	24	93	4	236	28	21	20	28	1.98
72623395--72623461	20	3.3	20	93	0	116	32	20	11	34	1.90
72623395--72623450	11	5.5	11	71	16	57	32	19	12	35	1.89
72623498--72623545	25	1.9	25	86	0	69	25	16	25	33	1.96
72639803--72640119	159	2.0	159	97	0	598	25	26	15	31	1.96
72643939--72644002	31	2.1	31	93	0	110	23	23	15	37	1.93
72644196--72644361	24	7.0	24	87	4	230	27	21	22	28	1.99
72644195--72644361	47	3.5	48	88	4	232	26	21	22	29	1.99
72644196--72644361	71	2.3	71	90	3	253	27	21	22	28	1.99
72644411--72644477	20	3.3	20	91	0	107	32	22	11	32	1.90
72644514--72644561	25	1.9	25	86	0	69	25	16	25	33	1.96
72648663--72648794	47	2.7	49	80	10	148	25	28	18	28	1.98
72650354--72650498	75	1.9	75	98	0	281	37	25	6	29	1.82
72652170--72652322	40	3.8	40	90	3	236	31	27	18	22	1.97
72661466--72661588	56	2.2	56	94	0	210	35	25	12	26	1.91
72663131--72663165	17	2.1	17	100	0	70	28	17	5	48	1.69
72663543--72663577	18	1.9	18	88	0	52	31	8	25	34	1.86
72664189--72664293	52	2.1	52	87	5	153	28	19	21	30	1.97
72664183--72664293	26	4.3	26	81	3	102	27	20	21	29	1.98
72664347--72664399	20	2.7	20	81	0	70	28	18	13	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72669536--72670021	40	12.2	40	95	1	850	27	27	20	24	1.99
72675654--72675746	26	3.6	25	79	4	105	31	24	23	20	1.98
72675802--72675858	20	2.8	20	100	0	114	35	19	10	35	1.86
72675802--72675857	11	5.5	11	75	16	66	33	19	10	35	1.87
72681798--72681972	46	3.8	46	76	13	187	29	29	20	21	1.98
72681806--72681977	93	1.8	93	91	0	281	28	29	20	20	1.98
72681849--72681992	46	3.1	45	72	8	110	29	27	20	22	1.98
72683119--72683177	30	2.0	30	100	0	118	35	20	6	37	1.79
72683723--72683783	30	2.1	30	87	3	88	42	3	22	31	1.70
72701585--72701703	43	2.8	42	86	7	150	25	17	28	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284