genome.fa.s9.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  30  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10492369--10492537	79	2.1	79	90	4	261	48	13	17	20	1.80
10492654--10492740	27	3.3	26	85	4	111	35	25	22	16	1.94
10493000--10493167	27	6.2	27	91	0	264	25	20	20	33	1.97
10493172--10493422	27	9.3	27	85	5	303	39	8	23	28	1.84
10493172--10493422	81	3.1	81	90	1	378	39	8	23	28	1.84
10493172--10493451	81	3.4	79	84	6	328	37	8	24	30	1.84
10504463--10504658	58	3.4	58	87	1	214	38	11	21	28	1.88
10504681--10504942	69	3.8	69	81	2	276	23	17	21	37	1.94
10504676--10504942	138	1.9	140	81	4	326	23	17	21	37	1.94
10508235--10508582	40	8.7	40	96	0	626	25	21	27	26	1.99
10513413--10513478	29	2.3	29	84	5	80	42	0	25	31	1.55
10514768--10514803	13	2.9	12	84	8	54	22	0	33	44	1.53
10521854--10521905	27	1.9	27	88	0	77	38	17	13	30	1.88
10522580--10522641	31	2.0	31	93	0	106	27	20	9	41	1.84
10523630--10523695	29	2.3	29	81	5	71	42	1	24	31	1.64
10524977--10525012	13	2.9	12	84	8	54	16	0	38	44	1.48
10530037--10530125	45	2.0	45	97	0	169	35	6	20	37	1.79
10530041--10530138	45	2.2	44	89	7	144	38	6	20	34	1.77
10531792--10531950	43	3.7	42	77	10	153	31	27	17	23	1.97
10532325--10532349	8	3.1	8	100	0	50	24	24	0	52	1.48
10534522--10534548	13	2.1	13	100	0	54	29	22	14	33	1.94
10536315--10536494	47	3.8	46	78	12	177	28	18	28	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10536318--10536489	95	1.8	94	86	6	249	29	18	29	23	1.97
10541339--10541514	46	3.8	45	77	10	185	20	20	29	29	1.98
10541335--10541507	93	1.9	93	92	0	292	20	20	30	28	1.98
10543039--10543074	13	2.9	12	84	8	54	16	0	38	44	1.48
10546274--10546429	40	3.9	40	93	2	253	27	28	22	21	1.99
10548294--10548335	22	1.9	22	85	0	57	23	19	16	40	1.91
10553727--10553888	43	3.8	42	78	8	157	33	25	16	24	1.95
10556158--10556227	33	2.1	33	89	0	104	11	35	5	45	1.64
10557028--10557121	47	2.0	47	93	0	161	19	12	30	37	1.89
10558301--10558480	47	3.8	47	80	10	199	28	17	29	23	1.97
10558303--10558475	95	1.8	94	86	6	251	29	17	29	23	1.97
10565942--10565995	15	3.6	15	76	0	63	11	18	12	57	1.64
10565938--10566006	30	2.3	30	85	2	95	8	17	17	56	1.65
10576620--10577164	27	20.3	27	82	4	523	37	19	11	31	1.88
10578695--10578720	12	2.2	12	100	0	52	50	7	0	42	1.31
10579198--10579349	27	5.6	27	93	3	232	25	13	29	30	1.94
10579198--10579349	55	2.8	55	93	0	250	25	13	29	30	1.94
10595043--10595146	42	2.4	43	81	7	106	35	27	15	21	1.93
10601644--10601747	42	2.4	44	78	9	117	34	22	14	28	1.93
10602474--10602504	12	2.6	12	100	0	62	51	25	6	16	1.68
10603066--10603283	85	2.5	88	82	5	268	33	24	17	24	1.96
10603069--10603272	42	4.8	42	82	3	221	33	24	17	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10607762--10607831	25	2.8	25	86	0	104	24	10	25	40	1.86
10610891--10610997	53	2.0	53	98	0	205	32	21	27	18	1.97
10616660--10616809	23	6.5	23	77	12	139	24	22	19	34	1.96
10621236--10621499	40	6.7	40	87	5	315	25	20	27	26	1.99
10621288--10621532	120	2.1	118	82	4	296	26	20	27	26	1.99
10627534--10627700	23	7.3	23	82	8	148	25	22	15	36	1.93
10627499--10627617	22	5.1	22	75	17	82	25	21	17	35	1.95
10627582--10627706	22	5.6	22	84	7	135	25	22	15	36	1.93
10629568--10629704	39	3.5	39	86	5	170	25	23	27	24	2.00
10629655--10629756	52	2.0	51	96	1	186	26	24	27	21	1.99
10629621--10629796	91	1.9	92	91	1	291	25	23	28	23	2.00
10629706--10629843	40	3.5	40	88	4	199	23	22	28	25	1.99
10629575--10629815	131	1.8	131	86	7	355	25	21	27	25	2.00
10629704--10629876	79	2.2	79	83	6	208	25	21	27	25	1.99
10634169--10634364	48	4.0	48	86	6	261	31	29	17	20	1.96
10638415--10638831	207	2.0	207	94	0	726	24	28	26	20	1.99
10639841--10640011	43	4.0	43	79	6	186	33	25	13	26	1.93
10639842--10639998	86	1.8	85	83	4	208	33	26	14	26	1.94
10642595--10642628	17	2.0	17	100	0	68	35	11	17	35	1.87
10645268--10645405	40	3.5	40	93	3	226	23	28	23	24	2.00
10649104--10649166	31	2.0	31	96	0	117	30	9	6	53	1.58
10652644--10652819	46	3.8	46	78	4	192	23	20	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10654368--10654549	28	6.5	28	92	1	267	33	26	12	27	1.92
10657432--10657508	39	1.9	39	87	7	111	25	19	28	25	1.99
10657447--10657521	39	1.9	39	86	5	107	26	16	32	25	1.96
10657512--10657746	40	5.9	40	89	0	308	25	21	27	25	1.99
10660861--10661346	257	1.9	257	100	0	972	34	11	20	33	1.88
10661347--10661479	47	2.8	47	87	0	185	31	9	32	26	1.89
10664690--10665030	170	2.0	170	99	0	673	27	20	16	35	1.94
10665830--10665947	40	3.0	40	88	3	168	25	27	22	25	2.00
10666505--10666711	53	3.8	54	79	1	227	20	24	18	37	1.94
10674028--10674162	53	2.5	52	78	9	137	21	22	17	38	1.93
10677032--10677126	45	2.1	45	88	7	140	38	17	20	23	1.93
10677349--10677427	40	2.0	40	82	0	95	39	17	8	34	1.81
10678177--10678237	22	2.9	20	79	11	68	18	4	3	73	1.14
10678382--10678444	33	1.9	33	87	9	94	53	6	0	39	1.26
10678417--10678474	17	3.2	17	78	11	53	50	8	1	39	1.43
10678681--10678766	3	29.7	3	76	17	76	61	3	0	34	1.13
10678692--10678774	19	4.3	19	74	18	64	60	3	0	36	1.14
10683168--10683192	12	2.1	12	100	0	50	56	0	8	36	1.29
10685555--10685630	27	2.8	27	84	9	93	42	15	7	34	1.76
10685664--10685715	27	1.9	27	88	0	77	42	19	3	34	1.69
10685574--10685731	81	2.0	81	81	5	185	38	17	10	33	1.84
10685701--10686085	27	14.5	27	85	3	512	37	20	19	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10685802--10685842	21	2.0	21	90	0	64	41	24	12	21	1.87
10685701--10686089	81	4.9	81	92	3	628	37	20	19	22	1.94
10690531--10690625	45	2.1	45	88	7	140	38	17	20	23	1.93
10690848--10690926	40	2.0	40	82	0	95	39	17	8	34	1.81
10691688--10691748	22	2.9	20	79	11	68	18	4	3	73	1.14
10691891--10691953	33	1.9	33	87	9	94	53	6	0	39	1.26
10692232--10692286	19	2.8	19	82	15	60	56	3	0	40	1.17
10692260--10692294	9	3.8	9	88	7	52	54	0	0	45	0.99
10718090--10718124	18	1.9	18	94	0	61	34	20	14	31	1.92
10721380--10721535	43	3.6	43	78	8	140	28	13	24	33	1.93
10725307--10725476	43	4.0	43	79	9	168	25	14	25	34	1.94
10729357--10729591	112	2.1	112	96	0	443	22	27	26	23	2.00
10730742--10730829	45	2.0	45	93	0	149	38	25	13	22	1.91
10730764--10730833	21	3.2	21	65	15	52	40	24	12	22	1.89
10737777--10737815	10	3.9	10	80	12	53	20	7	2	69	1.26
10740441--10740472	15	2.1	15	100	0	64	31	18	15	34	1.93
10747177--10747302	55	2.3	54	82	9	148	28	31	25	14	1.95
10751353--10751400	25	1.9	25	100	0	96	12	8	25	54	1.65
10752729--10752755	12	2.2	12	100	0	54	55	18	0	25	1.43
10756651--10756766	48	2.4	48	86	2	153	27	26	17	28	1.97
10759801--10759926	61	2.1	61	95	1	227	27	15	16	39	1.89
10766819--10767059	121	2.0	121	99	0	473	28	21	7	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10768359--10768577	23	9.2	23	80	8	242	31	24	18	26	1.98
10769174--10769519	137	2.5	137	78	4	313	21	19	26	32	1.97
10771153--10771198	20	2.3	20	100	0	92	8	19	43	28	1.80
10773077--10773118	21	2.0	20	86	4	57	50	0	16	33	1.46
10777991--10778256	137	1.9	137	82	1	327	21	21	25	31	1.98
10778219--10778298	42	1.9	41	84	2	106	21	22	23	32	1.98
10784866--10785019	42	3.6	42	83	3	148	31	14	24	29	1.95
10788137--10788171	18	1.9	18	88	0	52	51	8	34	5	1.56
10792895--10792951	25	2.3	25	87	0	78	22	24	21	31	1.98
10793595--10793636	20	2.2	19	83	12	50	59	4	19	16	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284