genome.fa.s9.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  149  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49880161--49880228	27	2.3	29	78	14	77	45	14	8	30	1.76
49881163--49881213	20	2.6	20	76	14	61	33	0	1	64	1.05
49882431--49882473	13	3.2	13	81	15	52	69	6	0	23	1.12
49883548--49883628	29	2.8	29	75	9	83	38	1	3	56	1.25
49891187--49891296	56	1.9	57	96	1	204	31	23	20	24	1.98
49903854--49903931	41	1.9	40	89	2	120	26	12	24	35	1.92
49905352--49905469	58	2.0	58	96	0	218	31	18	13	36	1.90
49906728--49906779	20	2.6	20	81	0	59	36	7	11	44	1.70
49906778--49906837	29	2.1	29	100	0	120	33	10	10	46	1.71
49910478--49910520	20	2.0	22	82	8	54	46	4	2	46	1.36
49911332--49911397	18	4.0	18	71	28	58	60	0	0	39	0.97
49913470--49913529	27	2.3	24	83	13	75	60	8	3	28	1.42
49920087--49920136	21	2.4	20	77	9	55	20	34	30	16	1.94
49927103--49927136	13	2.5	14	90	4	52	2	14	0	82	0.79
49927811--49927933	49	2.5	49	80	5	133	26	16	36	21	1.94
49927811--49927953	49	2.9	48	75	8	128	27	16	34	20	1.95
49931038--49931081	21	2.0	23	91	8	74	40	13	11	34	1.81
49932272--49932322	25	2.1	23	82	13	59	45	3	29	21	1.70
49935187--49935263	38	2.1	37	90	2	118	51	5	15	25	1.64
49942237--49942279	6	7.3	6	89	5	70	16	65	16	2	1.38
49951787--49951828	20	2.1	20	100	0	84	33	9	14	42	1.78
49952052--49952119	34	2.0	34	100	0	136	35	14	11	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49957176--49957209	17	2.0	17	94	0	59	55	0	0	44	0.99
49964054--49964092	11	3.4	12	82	10	55	35	7	28	28	1.85
49966989--49967043	27	2.0	27	92	0	92	30	20	23	25	1.98
49967394--49967464	38	1.9	37	86	11	101	38	2	2	56	1.29
49967394--49967486	38	2.4	36	81	16	100	38	3	4	53	1.37
49967543--49967596	11	5.0	11	72	20	51	50	0	0	50	1.00
49967543--49967595	5	9.7	6	74	25	55	49	0	0	50	1.00
49967546--49967594	16	3.1	16	81	0	62	48	0	0	51	1.00
49981303--49981329	14	1.9	14	100	0	54	81	0	0	18	0.69
49986127--49986164	19	2.0	19	100	0	76	26	31	5	36	1.79
49987130--49987173	13	3.5	13	75	12	56	54	4	0	40	1.21
49987129--49987180	24	2.2	24	89	0	77	55	5	0	38	1.24
49988635--49988716	30	2.8	30	94	1	148	63	6	0	30	1.19
49992183--49992283	47	2.1	48	78	12	111	63	2	3	29	1.27
49992216--49992255	21	1.9	21	84	0	53	67	2	0	30	1.04
49992525--49992565	18	2.2	18	86	4	55	36	2	0	60	1.10
49997610--49997693	13	6.3	13	72	15	73	32	2	14	51	1.55
49997622--49997662	10	4.3	9	82	11	55	31	0	12	56	1.36
49997681--49997750	30	2.3	30	90	0	113	27	4	10	58	1.49
49997700--49997749	21	2.4	20	76	6	55	26	6	8	60	1.48
49999714--49999905	96	2.0	96	96	0	357	32	18	21	27	1.97
50000210--50000470	69	3.8	69	81	6	321	34	14	26	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50000210--50000466	138	1.9	138	86	1	372	34	15	26	23	1.94
50000376--50000565	99	1.9	99	88	2	283	33	16	26	23	1.96
50000470--50000634	69	2.4	69	85	2	215	36	17	24	21	1.95
50000470--50000661	69	2.8	68	78	7	199	36	17	24	21	1.95
50000233--50000661	237	1.8	237	86	1	617	35	16	25	23	1.95
50002463--50002531	27	2.6	25	79	6	75	46	4	1	47	1.31
50016558--50016654	49	2.0	50	86	10	137	41	1	0	57	1.05
50016558--50016654	48	2.0	51	84	10	130	41	1	0	57	1.05
50017336--50017414	29	2.7	29	80	3	79	43	5	15	36	1.69
50021115--50021163	21	2.4	22	83	10	59	53	2	0	44	1.12
50022706--50022849	72	2.0	72	98	0	279	30	19	18	31	1.96
50023058--50023105	23	2.0	24	84	11	64	64	4	4	27	1.30
50034981--50035296	87	3.7	86	80	7	268	31	12	10	44	1.77
50039300--50039401	28	3.5	28	69	19	82	27	28	16	27	1.97
50039289--50039437	60	2.5	59	81	9	151	28	24	17	28	1.97
50039430--50039468	20	2.0	20	85	10	53	28	25	17	28	1.98
50040911--50040959	25	1.9	26	87	4	73	65	0	32	2	1.04
50040911--50040965	25	2.3	23	79	17	67	65	0	32	1	1.03
50043558--50043593	5	7.2	5	93	0	63	38	0	0	61	0.96
50050318--50050393	27	2.8	27	82	4	82	27	27	26	18	1.98
50060762--50060799	15	2.5	15	91	0	58	52	18	10	18	1.73
50060757--50060809	15	3.5	15	79	5	54	56	15	11	16	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50064318--50064355	20	2.0	20	94	5	69	71	0	28	0	0.87
50075002--50075049	21	2.3	21	82	10	55	54	2	2	41	1.24
50075057--50075167	57	1.9	57	94	0	195	64	4	18	11	1.42
50075169--50075206	20	2.0	20	94	5	69	71	0	28	0	0.87
50087422--50087530	37	2.9	37	90	0	164	27	29	18	24	1.98
50087677--50087805	46	2.8	46	81	5	136	27	29	9	34	1.88
50087740--50088003	47	5.5	47	86	3	375	25	29	12	32	1.93
50087824--50087907	24	3.5	24	66	23	61	26	30	11	30	1.92
50087740--50088002	145	1.8	141	90	3	418	25	29	12	31	1.93
50087740--50088002	98	2.7	96	90	2	395	25	29	12	31	1.93
50087975--50088024	22	2.3	22	100	0	100	22	32	16	30	1.95
50088029--50088253	76	3.0	76	98	0	432	29	22	21	25	1.99
50089344--50089425	26	3.2	26	94	0	146	34	25	7	32	1.84
50096871--50096928	28	2.1	28	100	0	116	25	20	27	25	1.99
50099662--50099756	47	2.0	47	100	0	190	28	18	25	27	1.98
50100092--50100144	26	2.0	27	85	7	74	24	15	22	37	1.92
50101624--50101688	32	2.0	32	100	0	130	38	24	6	30	1.80
50107830--50107882	26	2.0	27	85	7	74	24	13	22	39	1.90
50109342--50109403	32	1.9	32	100	0	124	37	27	6	29	1.82
50112888--50113072	74	2.5	74	81	0	208	31	15	21	31	1.94
50120501--50120649	60	2.5	59	81	9	160	26	24	20	28	1.99
50120642--50120687	20	2.3	20	82	14	60	28	28	17	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50122786--50122826	3	13.7	3	94	0	73	65	0	2	31	1.05
50125754--50125822	33	2.1	33	100	0	138	24	30	5	39	1.79
50131448--50131567	46	2.6	46	82	2	141	28	17	27	26	1.98
50133474--50133516	22	2.0	22	86	9	61	13	27	30	27	1.95
50143521--50143636	29	4.1	27	73	7	90	31	14	26	27	1.95
50143536--50143637	29	3.6	28	77	3	109	29	16	29	24	1.97
50143525--50143635	57	2.0	56	87	5	161	30	15	27	26	1.96
50148001--50148073	29	2.5	29	76	12	69	30	13	28	27	1.94
50151503--50151588	39	2.2	39	95	2	156	45	16	9	29	1.78
50159274--50159373	50	2.0	50	98	0	191	16	21	18	45	1.86
50165838--50165866	5	5.8	5	100	0	58	17	0	0	82	0.66
50170290--50170321	5	6.6	5	92	7	57	18	0	0	81	0.70
50173720--50173774	9	5.8	9	77	12	56	76	1	0	21	0.88
50173720--50173774	10	5.7	10	76	6	60	76	1	0	21	0.88
50173711--50173773	19	3.3	19	86	4	90	73	3	0	23	0.98
50174476--50174506	11	2.7	12	90	10	55	32	0	0	67	0.91
50174480--50174507	11	2.5	11	100	0	56	32	0	0	67	0.91
50174629--50174691	30	2.1	30	87	0	90	60	14	1	23	1.43
50174721--50174763	22	2.0	22	85	0	59	55	9	13	20	1.66
50178679--50178737	24	2.5	24	88	0	91	35	0	35	28	1.58
50180169--50180275	27	3.9	27	82	9	128	15	23	22	38	1.93
50180169--50180278	54	2.0	54	85	3	150	15	23	21	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50184455--50184595	38	3.7	38	87	3	185	24	24	22	29	1.99
50184593--50184790	43	4.6	43	94	0	324	11	25	31	31	1.91
50186792--50186907	58	1.9	61	82	6	148	50	5	3	40	1.41
50188139--50188172	16	2.2	15	89	5	50	32	0	44	23	1.54
50192283--50192363	30	2.6	30	80	5	90	45	20	6	27	1.75
50194053--50194185	42	3.2	43	73	4	110	29	15	25	30	1.95
50194053--50194211	84	1.9	84	82	0	201	29	17	24	28	1.97
50198201--50198446	49	4.9	50	81	2	271	25	18	26	30	1.98
50199427--50199632	38	4.9	38	71	19	151	30	15	24	30	1.95
50199454--50199592	48	2.9	48	88	1	199	31	15	22	30	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284