genome.fa.s9.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  192  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64818558--64818672	43	2.6	44	76	9	119	36	20	17	25	1.94
64818647--64818764	44	2.7	44	75	6	125	36	21	22	20	1.95
64818807--64818934	42	3.1	42	88	2	204	31	18	22	27	1.97
64818807--64818923	41	2.8	41	92	1	189	30	20	22	26	1.98
64820360--64820400	22	2.0	22	85	9	59	29	0	7	63	1.21
64830413--64831554	573	2.0	571	98	0	2207	30	19	19	30	1.97
64832184--64832219	3	12.0	3	100	0	72	33	0	0	66	0.92
64841567--64841602	3	12.0	3	100	0	72	33	0	0	66	0.92
64851087--64851122	15	2.4	15	95	0	63	19	8	5	66	1.38
64851942--64852430	131	3.7	131	85	1	651	36	19	17	26	1.94
64851931--64852430	263	1.9	262	85	2	698	36	19	17	26	1.94
64862275--64862345	5	14.2	5	98	0	133	61	18	0	19	1.34
64862418--64862472	25	2.3	25	76	17	64	52	5	3	38	1.42
64868878--64868909	7	4.6	7	100	0	64	37	0	0	62	0.95
64880996--64881030	4	9.2	4	87	12	56	77	0	0	22	0.78
64883732--64883767	18	2.0	19	89	10	58	16	44	25	13	1.85
64895128--64895186	25	2.4	25	85	8	84	20	25	23	30	1.98
64903377--64903496	56	2.1	56	76	0	123	24	25	23	26	2.00
64906226--64906499	88	3.1	88	98	0	530	38	10	17	33	1.84
64907389--64907493	53	2.0	53	98	0	201	25	9	27	37	1.87
64910129--64910182	20	2.7	20	80	11	74	66	3	1	27	1.19
64910120--64910189	20	3.5	20	75	11	54	65	5	2	25	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64910779--64910825	21	2.2	21	77	7	51	36	0	0	63	0.94
64910788--64910876	20	4.5	19	73	21	69	34	0	3	61	1.12
64910788--64910892	19	5.4	19	70	23	58	33	0	3	61	1.20
64911612--64911836	113	2.0	113	93	0	387	32	21	17	28	1.96
64917417--64917451	16	2.2	16	100	0	70	57	11	5	25	1.56
64919765--64919789	6	4.2	6	100	0	50	36	0	48	16	1.46
64919954--64920049	30	3.2	29	88	2	138	48	3	10	37	1.53
64920221--64920273	21	2.5	21	93	0	88	30	37	9	22	1.86
64924520--64924589	35	2.0	35	94	0	122	25	11	32	30	1.91
64925922--64925963	20	2.0	22	86	9	61	50	4	9	35	1.56
64926184--64926213	15	2.0	15	100	0	60	33	13	6	46	1.69
64926307--64926337	13	2.5	13	94	5	55	35	6	9	48	1.62
64932762--64933079	37	8.5	37	78	3	278	34	17	18	28	1.94
64932777--64933057	112	2.5	112	85	0	373	34	18	18	28	1.94
64934058--64934170	54	2.1	54	80	3	120	28	23	25	23	1.99
64941207--64941276	16	4.4	16	94	0	104	30	1	34	34	1.67
64941255--64941364	45	2.6	43	80	9	129	33	5	29	31	1.80
64941490--64941531	15	2.7	16	82	14	52	52	2	0	45	1.13
64941499--64941540	15	2.9	15	82	10	52	52	0	0	47	1.00
64941525--64941712	61	3.1	61	70	14	199	48	6	1	42	1.39
64941609--64941667	15	4.0	15	78	14	61	52	1	0	45	1.10
64941493--64941714	120	1.9	120	98	0	426	49	6	1	42	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64941586--64941670	43	2.0	43	82	8	104	54	2	1	42	1.21
64946060--64946400	132	2.6	131	82	1	387	28	20	17	33	1.96
64946061--64946446	132	2.9	134	80	2	350	29	19	17	33	1.95
64947111--64947141	16	1.9	16	93	0	53	41	0	3	54	1.16
64947221--64947251	12	2.6	12	94	0	53	74	0	25	0	0.82
64950466--64950505	19	2.1	19	95	0	71	10	12	5	72	1.26
64950666--64950716	25	2.2	23	83	16	61	35	3	0	60	1.15
64958742--64958782	20	2.0	20	100	0	82	43	24	0	31	1.54
64961196--64961237	21	2.0	21	90	0	66	30	21	0	47	1.51
64961209--64961233	13	1.9	13	100	0	50	36	24	0	40	1.55
64963320--64963365	23	2.0	23	84	12	60	45	10	6	36	1.65
64963327--64963371	23	2.0	23	82	8	56	40	13	8	37	1.76
64967488--64967638	32	4.6	33	81	3	189	33	8	23	34	1.86
64967488--64967648	33	4.9	33	80	3	173	33	9	22	34	1.86
64967498--64967682	97	1.9	97	81	6	223	32	12	21	33	1.91
64967597--64967755	78	2.0	78	95	0	282	34	15	18	30	1.93
64968699--64968936	78	3.0	78	87	2	352	32	21	13	32	1.92
64968901--64969003	40	2.6	40	82	0	125	34	21	11	32	1.89
64970665--64970696	12	2.6	13	85	14	50	56	6	0	37	1.25
64972226--64972337	56	2.0	56	96	0	206	38	18	6	36	1.76
64973721--64973774	3	18.0	3	88	0	81	33	29	1	35	1.69
64974316--64974346	2	15.5	2	100	0	62	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64978297--64980046	875	2.0	875	100	0	3500	39	12	10	38	1.77
64981198--64981236	17	2.3	17	86	0	51	48	12	12	25	1.77
65000678--65000927	129	2.0	127	95	1	455	36	24	14	24	1.93
65001554--65001622	29	2.4	29	86	11	106	59	4	2	33	1.32
65001556--65001648	29	3.1	29	78	12	82	59	4	4	32	1.37
65001898--65001936	19	2.1	19	100	0	78	51	10	15	23	1.73
65002786--65002820	18	2.0	18	94	5	63	5	14	51	28	1.65
65005079--65005144	26	2.6	25	83	7	71	34	24	22	18	1.96
65009855--65009899	3	15.0	3	100	0	90	33	0	0	66	0.92
65014840--65014889	23	2.2	23	85	0	64	44	10	0	46	1.37
65014964--65014997	14	2.3	15	90	5	52	67	0	2	29	1.05
65015372--65015424	17	3.2	17	81	2	63	30	0	3	66	1.10
65016710--65016769	28	2.1	28	82	11	70	60	1	3	35	1.23
65016734--65016770	18	2.0	19	89	5	58	62	0	2	35	1.10
65016737--65016819	35	2.3	35	81	8	96	62	6	1	30	1.27
65016768--65016805	16	2.3	16	86	13	51	65	5	0	28	1.14
65016960--65017028	9	7.4	9	75	16	52	34	0	1	63	1.03
65016977--65017021	8	5.2	9	80	15	51	33	0	2	64	1.06
65016982--65017036	17	3.1	18	84	10	69	32	0	1	65	1.03
65016970--65017036	10	6.9	10	80	13	54	34	0	1	64	1.03
65020754--65020794	21	2.0	21	90	0	64	19	29	21	29	1.98
65025947--65025981	14	2.4	15	90	4	54	0	31	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65033405--65033583	46	3.9	46	87	2	252	21	23	13	41	1.89
65033548--65033673	45	2.8	45	82	0	153	22	23	16	37	1.94
65033731--65033808	33	2.4	33	77	12	79	24	25	20	29	1.99
65039134--65039506	148	2.5	151	90	3	567	21	22	26	29	1.99
65041148--65041192	23	1.9	24	90	4	74	71	0	0	28	0.87
65052471--65052524	27	2.0	27	100	0	108	14	25	18	40	1.89
65062201--65062254	21	2.5	22	88	5	76	24	0	5	70	1.08
65062233--65062289	25	2.3	25	82	8	73	28	0	1	70	0.98
65064538--65064797	140	1.9	137	80	9	310	55	7	6	30	1.53
65064759--65064869	3	36.7	3	71	16	61	57	3	3	35	1.33
65069118--65069146	15	1.9	15	100	0	58	6	13	10	68	1.37
65084184--65084227	17	2.8	15	83	12	61	27	0	0	72	0.85
65084183--65084227	16	2.9	15	83	6	54	26	0	0	73	0.84
65086222--65086250	15	1.9	15	100	0	58	13	13	3	68	1.33
65090245--65090295	25	2.0	25	100	0	102	35	3	37	23	1.74
65092496--65092561	27	2.5	26	78	7	69	25	4	6	63	1.37
65092968--65093037	22	3.3	21	77	15	81	62	5	1	30	1.27
65092968--65093029	20	3.0	21	81	6	81	62	6	1	29	1.29
65102064--65102138	11	6.8	11	84	0	105	26	2	2	68	1.17
65102064--65102138	14	5.4	14	78	12	84	26	2	2	68	1.17
65103122--65103190	16	4.2	16	92	3	120	24	1	37	36	1.65
65103122--65103190	33	2.1	32	94	2	120	24	1	37	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65103171--65103261	45	2.0	45	85	2	121	27	6	28	37	1.82
65103426--65103460	18	2.0	17	88	5	52	54	0	0	45	0.99
65111811--65111891	37	2.2	37	86	0	108	34	17	6	41	1.74
65123260--65123285	10	2.6	10	100	0	52	0	11	0	88	0.52
65125798--65125832	18	2.0	18	88	5	54	34	11	17	37	1.85
65146163--65146346	83	2.2	85	82	4	221	28	21	25	24	1.99
65148037--65148253	44	5.0	44	90	1	294	29	33	15	21	1.94
65150032--65150126	47	2.0	47	100	0	190	34	14	12	37	1.84
65154688--65154880	98	2.0	98	90	0	305	22	26	12	37	1.91
65156978--65157027	21	2.4	21	96	0	91	22	2	40	36	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284