Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  120  of  284  ( 34012 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39747537--39747570
5
6.8
5
100
0
68
82
0
0
17
0.67
39748898--39749175
91
3.1
91
96
0
493
21
7
14
56
1.63
39749201--39749255
23
2.4
23
81
6
67
40
18
14
27
1.89
39749318--39749347
4
7.5
4
92
0
51
46
23
3
26
1.68
39750141--39750175
16
2.1
17
89
5
54
37
0
5
57
1.23
39750141--39750181
15
2.6
17
82
17
54
41
0
4
53
1.22
39755902--39755947
16
2.9
16
81
12
51
60
2
0
36
1.09
39755902--39755934
17
2.0
17
88
5
50
60
0
0
39
0.97
39771758--39771783
9
2.9
9
100
0
52
46
7
0
46
1.31
39785463--39785505
15
2.6
17
89
10
72
37
16
4
41
1.69
39786185--39786232
19
2.6
19
80
3
53
37
4
10
47
1.57
39786241--39786338
43
2.3
43
89
3
144
31
6
13
48
1.66
39790698--39790745
19
2.6
19
90
3
71
33
0
16
50
1.46
39790755--39790852
43
2.3
44
85
5
139
31
6
12
50
1.64
39799809--39800671
432
2.0
432
97
0
1645
33
17
15
34
1.91
39815255--39815348
27
3.4
27
91
2
143
30
28
12
27
1.93
39825354--39825531
27
6.6
27
84
3
205
29
28
15
26
1.96
39825375--39825530
82
1.9
81
88
3
233
29
28
15
26
1.96
39828985--39829043
30
2.0
30
100
0
118
25
16
27
30
1.97
39829378--39829451
35
2.1
35
85
5
96
29
21
18
29
1.97
39829389--39829486
35
2.7
35
85
4
115
33
20
18
27
1.96
39831326--39831446
46
2.6
46
85
7
147
26
14
32
26
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39831374--39831496
46
2.6
45
83
10
133
27
17
29
26
1.97
39834053--39834185
54
2.5
53
92
2
221
33
27
17
22
1.96
39838292--39838343
25
2.1
25
85
7
70
15
28
19
36
1.92
39838416--39838484
26
2.7
26
75
4
68
18
23
18
39
1.93
39839037--39839152
60
1.9
60
98
0
223
21
12
18
47
1.81
39839479--39839620
47
3.0
47
94
1
241
27
11
14
46
1.79
39840427--39840683
45
5.9
44
85
8
298
23
20
29
25
1.99
39840430--39840683
88
2.9
86
84
9
304
23
20
30
25
1.99
39840991--39841023
16
1.9
18
88
11
52
24
15
12
48
1.78
39841310--39841378
24
2.8
24
70
14
61
21
24
20
33
1.97
39844528--39844604
23
3.4
23
78
8
86
35
19
20
24
1.96
39844521--39844591
22
3.2
22
80
7
72
35
18
22
23
1.96
39845031--39845089
31
1.9
31
86
6
84
25
16
8
49
1.74
39854141--39854182
22
2.0
21
81
13
50
38
2
4
54
1.34
39857395--39857700
46
6.6
46
88
6
458
31
27
18
21
1.97
39857359--39857719
46
7.8
46
79
11
183
31
28
18
22
1.97
39863962--39864044
27
3.0
27
87
5
114
69
1
18
10
1.23
39864017--39864092
33
2.3
33
80
13
86
59
5
23
11
1.53
39866431--39866501
30
2.4
30
100
0
142
21
30
15
32
1.94
39869492--39869573
33
2.5
32
76
7
83
15
26
4
52
1.63
39869567--39869627
27
2.2
29
88
5
90
9
19
1
68
1.26
39872277--39872355
31
2.8
27
71
22
72
41
11
12
34
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39879152--39879241
47
1.9
47
86
4
128
45
11
17
25
1.81
39899351--39899398
9
5.4
9
80
9
55
75
0
18
6
1.01
39899352--39899398
17
2.7
17
86
3
58
74
0
19
6
1.03
39900836--39900901
23
2.9
23
77
8
80
28
6
27
37
1.80
39902266--39902405
44
3.2
44
67
4
111
25
29
22
22
1.99
39902258--39902567
88
3.5
88
87
1
433
27
26
24
22
2.00
39902355--39902498
44
3.3
43
67
10
112
27
31
20
20
1.97
39902291--39902522
43
5.3
42
65
8
122
27
26
25
21
1.99
39902563--39902774
44
4.8
44
84
4
234
28
19
25
26
1.99
39902578--39902761
87
2.1
88
87
3
264
27
20
24
27
1.99
39906233--39906310
27
2.9
27
94
0
138
15
24
30
29
1.95
39906285--39906540
74
3.4
74
83
6
300
22
17
26
33
1.96
39909015--39909050
18
1.9
19
88
5
56
55
19
13
11
1.68
39918175--39918301
33
3.6
33
74
15
110
21
18
25
35
1.95
39918099--39918304
74
2.8
74
85
5
256
22
19
24
33
1.97
39921992--39922100
18
5.9
18
72
13
78
6
18
2
72
1.18
39921988--39922095
6
17.7
6
66
17
53
6
18
2
72
1.19
39924210--39924254
20
2.2
20
88
7
65
51
8
6
33
1.59
39924219--39924264
20
2.4
19
85
7
65
43
13
13
30
1.81
39926263--39926320
17
3.4
17
70
0
62
25
8
17
48
1.75
39940766--39940809
20
2.2
20
88
8
63
52
9
6
31
1.59
39940776--39940814
20
2.0
20
94
0
69
46
12
10
30
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39942639--39942672
16
2.0
18
88
11
54
32
5
0
61
1.20
39947797--39947850
22
2.7
20
85
8
65
75
0
14
9
1.03
39947822--39947855
17
2.1
16
94
5
59
85
0
14
0
0.60
39949164--39949389
44
5.1
44
63
10
120
25
25
24
24
2.00
39949105--39949419
88
3.6
88
87
1
452
27
25
24
23
2.00
39949428--39949658
44
5.2
44
86
4
306
26
20
24
28
1.99
39949413--39949683
88
3.1
87
80
7
278
28
19
25
26
1.99
39949407--39949683
132
2.1
134
82
7
359
28
19
25
26
1.98
39951184--39951230
23
2.1
21
84
7
58
29
0
6
63
1.19
39951405--39951440
18
2.1
16
90
10
54
33
5
0
61
1.19
39952970--39953012
23
1.9
22
85
4
59
32
0
6
60
1.23
39953152--39953354
33
5.6
33
68
21
120
21
18
27
32
1.97
39953145--39953436
76
3.8
75
81
7
322
23
18
27
30
1.97
39964487--39964537
15
3.5
15
78
5
50
70
3
19
5
1.24
39970994--39971203
74
2.8
75
85
7
266
23
19
25
31
1.98
39971225--39971300
29
2.5
29
80
8
80
17
22
31
28
1.96
39974740--39974801
18
3.4
18
84
2
70
6
17
3
72
1.19
39974681--39974802
57
2.1
54
76
17
122
7
19
2
70
1.23
39974694--39974796
6
16.7
6
68
13
57
6
20
2
69
1.24
39976901--39976945
20
2.2
20
88
7
65
51
8
6
33
1.59
39976910--39976955
20
2.4
19
85
7
65
43
13
13
30
1.81
39979088--39979144
30
1.9
29
86
10
80
29
17
31
21
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39982284--39982308
12
2.1
12
100
0
50
76
8
0
16
1.02
39985744--39985974
116
2.0
116
100
0
462
30
17
12
39
1.87
39987739--39987785
20
2.3
20
85
0
67
21
12
36
29
1.91
39989456--39989561
48
2.2
48
85
9
137
14
24
1
59
1.45
39989611--39989727
12
9.8
12
71
16
64
9
19
3
67
1.33
39989605--39989745
39
3.5
39
75
12
126
9
22
2
65
1.35
39989651--39989709
18
3.3
18
80
0
73
5
16
6
71
1.26
39990640--39990677
10
3.8
10
83
13
51
26
15
28
28
1.96
39990642--39990688
20
2.3
20
92
0
76
23
17
34
25
1.96
39993213--39993328
6
19.0
6
68
10
74
72
1
18
6
1.16
39993316--39993350
18
1.9
18
88
11
54
57
0
20
22
1.41
39999505--39999580
34
2.2
34
88
0
107
42
10
9
38
1.71
40001446--40001479
12
2.8
12
83
16
52
5
17
0
76
0.98
40001405--40001501
42
2.3
43
83
3
126
8
21
2
68
1.27
40006420--40006461
21
2.1
21
87
12
63
19
23
0
57
1.41
40006432--40006502
18
3.8
18
74
20
65
16
25
1
56
1.49
40011354--40011429
34
2.2
33
93
4
125
43
11
9
35
1.73
40013445--40013503
11
5.2
11
75
20
50
42
0
35
22
1.54
40014765--40014816
21
2.5
21
90
0
86
28
3
15
51
1.60
40028510--40028564
20
2.8
20
86
5
76
23
21
18
36
1.95
40030472--40030565
46
2.0
46
93
0
161
24
19
21
35
1.96
40039501--40039762
39
6.7
40
87
7
337
25
22
27
24
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40041300--40041393
33
2.8
33
91
1
143
9
30
4
55
1.51
40041300--40041393
18
5.6
18
75
19
94
9
30
4
55
1.51
40041422--40041458
6
6.2
6
87
0
56
2
16
2
78
0.98
40041405--40041458
24
2.2
24
83
0
63
5
22
3
68
1.26
40041426--40041468
18
2.6
16
92
7
68
4
13
2
79
1.00
40065305--40065349
23
2.0
23
100
0
90
22
17
26
33
1.96
40080545--40080742
38
5.2
38
88
1
254
31
25
22
21
1.98
40081012--40081146
43
3.1
43
81
6
155
28
28
17
26
1.97
40088062--40088116
26
2.1
26
86
0
74
21
21
23
32
1.98
40092038--40092237
29
6.8
30
72
10
96
22
27
11
39
1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284