Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  12  of  284  ( 34012 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3874914--3874948
16
2.1
17
89
5
54
8
11
20
60
1.57
3876810--3877707
112
8.0
112
99
0
1778
31
26
16
25
1.96
3878792--3879110
46
6.7
47
76
11
226
24
29
19
26
1.98
3878792--3879062
138
1.9
145
85
6
378
23
30
19
25
1.98
3878843--3879115
94
2.9
94
76
10
256
23
29
19
27
1.98
3878792--3879110
140
2.2
143
82
7
373
24
29
19
26
1.98
3881170--3881199
7
4.3
7
100
0
60
56
0
0
43
0.99
3882229--3882332
26
4.2
26
69
14
83
57
2
1
37
1.25
3882232--3882350
38
3.2
38
66
13
111
56
2
1
39
1.23
3882224--3882380
74
2.1
74
97
0
296
59
3
2
35
1.27
3882794--3882827
13
2.8
12
86
8
50
38
0
35
26
1.57
3883142--3883173
14
2.1
16
88
11
50
43
0
3
53
1.16
3888502--3888595
42
2.2
42
83
5
109
29
22
20
27
1.98
3888492--3888595
43
2.4
43
80
4
122
28
23
20
27
1.99
3890863--3890896
10
3.3
10
84
8
50
38
2
0
58
1.13
3896444--3896553
55
2.0
55
98
0
211
35
20
9
34
1.85
3898663--3898714
23
2.3
23
89
0
77
61
5
9
23
1.48
3900424--3900572
60
2.5
59
81
9
151
27
25
19
27
1.99
3900565--3900610
20
2.3
20
82
14
60
28
23
17
30
1.97
3902730--3902758
15
1.9
15
100
0
58
72
0
0
27
0.85
3907456--3907503
23
2.1
23
92
0
78
37
8
20
33
1.83
3909024--3909062
18
2.2
18
86
4
53
15
7
20
56
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3909960--3910019
30
2.0
30
96
0
111
35
20
25
20
1.96
3914856--3914892
18
2.1
18
100
0
74
45
0
5
48
1.25
3920427--3920470
23
1.9
23
90
0
70
61
4
2
31
1.28
3920431--3920473
11
3.8
11
80
17
52
65
2
2
30
1.18
3920844--3920871
3
9.3
3
100
0
56
32
0
0
67
0.91
3924157--3924278
61
2.0
60
96
1
226
23
20
14
40
1.90
3926228--3926284
19
3.1
19
85
7
73
56
7
0
36
1.27
3926261--3926311
27
2.0
25
84
7
66
52
5
0
41
1.25
3926510--3926548
20
2.0
20
89
0
60
25
20
15
38
1.92
3926523--3926604
31
2.7
30
80
12
87
25
18
9
46
1.79
3927422--3927465
21
2.1
21
91
4
72
43
0
0
56
0.99
3954648--3954682
2
17.5
2
100
0
70
0
51
0
48
1.00
3965502--3965591
44
2.0
44
97
0
171
47
16
16
18
1.82
3966209--3966412
102
2.0
102
99
0
399
42
22
11
24
1.86
3967969--3968198
116
2.0
116
91
0
370
36
20
18
23
1.94
3969022--3969300
143
2.0
143
89
0
432
29
25
18
26
1.98
3969458--3969661
102
2.0
102
97
0
381
31
27
17
23
1.97
3973596--3973690
40
2.4
40
85
5
122
21
28
23
27
1.99
3975543--3975592
20
2.5
21
80
9
59
54
4
0
42
1.19
3976276--3976340
9
7.5
8
80
14
60
64
0
1
33
1.03
3976276--3976340
17
3.7
17
78
11
69
64
0
1
33
1.03
3977821--3977899
39
2.0
39
92
0
131
35
25
5
34
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3979137--3979182
17
2.7
17
86
6
58
73
4
0
21
1.00
3986359--3986422
33
1.9
33
93
0
110
40
12
15
31
1.85
3989691--3989736
17
2.7
17
86
6
58
73
4
0
21
1.00
4001528--4001751
47
4.8
47
77
11
203
27
20
29
22
1.98
4003347--4003371
12
2.1
12
100
0
50
16
0
0
84
0.63
4007496--4007533
18
2.2
18
86
9
53
68
2
7
21
1.28
4007779--4007806
5
5.6
5
100
0
56
17
0
0
82
0.68
4009696--4009774
26
3.0
26
80
7
72
36
18
10
34
1.85
4015467--4015689
40
5.6
40
83
4
200
25
21
27
25
1.99
4017719--4017889
46
3.7
45
83
10
204
24
32
17
25
1.97
4017719--4017890
90
1.9
94
85
9
248
25
31
17
25
1.97
4021963--4022265
152
2.0
152
100
0
606
37
16
17
28
1.91
4022903--4022940
19
2.0
19
94
0
67
36
28
5
28
1.79
4027456--4027658
102
2.0
102
96
0
370
37
19
15
26
1.92
4028229--4028319
21
4.8
19
76
16
91
27
6
13
52
1.64
4028217--4028429
55
3.9
55
82
1
257
29
7
11
51
1.65
4028225--4028429
110
1.9
110
87
4
306
28
7
11
52
1.65
4030691--4030783
48
1.9
48
88
0
141
35
13
23
26
1.93
4033225--4033283
24
2.5
24
88
5
84
57
1
1
38
1.19
4033230--4033289
16
4.0
15
81
14
79
60
1
0
38
1.07
4033233--4033283
8
6.4
8
90
0
84
60
1
0
37
1.08
4033231--4033289
24
2.7
21
84
10
73
61
1
0
37
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4033231--4033299
21
3.1
21
75
18
68
62
2
0
34
1.10
4033309--4033353
21
2.1
21
84
8
56
73
6
15
4
1.21
4050406--4050475
23
2.9
24
79
12
65
48
1
28
21
1.59
4054037--4054083
24
2.0
24
83
8
60
34
31
8
25
1.86
4056961--4056985
5
5.0
5
100
0
50
0
20
0
80
0.72
4065568--4065642
33
2.3
33
86
4
98
37
2
17
42
1.63
4065579--4065644
33
2.0
33
91
2
107
36
3
19
40
1.67
4077224--4077553
40
8.3
40
94
1
502
24
20
27
26
1.99
4077171--4077553
80
4.8
80
89
2
504
25
20
27
26
1.99
4077171--4077553
120
3.2
120
87
2
504
25
20
27
26
1.99
4085290--4085499
40
5.3
39
89
4
242
25
21
27
25
1.99
4085237--4085499
120
2.2
120
82
4
309
25
21
27
25
1.99
4085238--4085534
80
3.7
80
81
6
230
26
21
27
24
1.99
4100580--4100831
44
5.4
44
64
19
143
47
7
3
41
1.49
4100564--4100849
95
3.0
95
100
0
572
47
6
5
40
1.51
4100624--4100787
51
3.4
51
66
17
157
47
5
6
40
1.51
4108843--4108914
36
2.0
36
100
0
144
33
16
25
25
1.96
4114413--4114588
71
2.5
70
85
1
219
28
14
22
34
1.94
4114588--4114945
76
4.8
73
81
8
391
31
14
19
34
1.92
4114831--4115194
127
2.8
126
77
7
356
26
15
22
34
1.94
4115348--4115616
73
3.7
73
94
2
452
31
18
19
30
1.95
4116212--4116325
30
3.8
30
92
0
192
24
50
3
21
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4116820--4117029
25
8.4
24
68
16
99
33
6
4
56
1.44
4117010--4117065
19
2.8
20
75
8
60
32
7
5
55
1.50
4117181--4117228
16
3.1
15
90
6
69
31
2
2
64
1.16
4117181--4117232
8
6.5
8
82
8
61
30
1
1
65
1.14
4121750--4121826
39
2.0
39
82
5
93
29
27
18
24
1.98
4123503--4123678
46
3.8
46
79
10
205
19
21
30
28
1.97
4123499--4123671
93
1.9
93
93
0
301
19
21
31
27
1.97
4125193--4125257
32
2.0
32
100
0
130
46
0
12
41
1.41
4125432--4125479
14
3.4
14
76
2
51
29
0
31
39
1.57
4130348--4130413
23
2.9
23
95
0
114
33
4
21
40
1.73
4130348--4130620
46
6.1
45
69
19
146
31
6
22
39
1.79
4130478--4130620
23
6.1
23
75
8
128
32
7
22
37
1.82
4130763--4130809
19
2.5
19
76
10
51
21
2
4
72
1.12
4130730--4130819
31
2.9
30
77
19
96
26
4
2
66
1.22
4130947--4130975
11
2.7
11
94
5
51
48
0
10
41
1.37
4145858--4145916
29
2.2
29
82
11
72
38
3
0
57
1.15
4146655--4146696
15
2.8
15
96
0
75
30
14
4
50
1.63
4147244--4147322
21
3.8
21
71
18
76
59
1
1
37
1.14
4147244--4147322
10
7.6
10
72
20
56
59
1
1
37
1.14
4147239--4147299
29
2.1
29
84
6
79
62
1
0
36
1.05
4147358--4147416
20
3.0
20
71
16
52
57
3
3
35
1.32
4147557--4147608
16
3.2
16
86
0
59
42
1
21
34
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4147755--4147804
26
2.0
26
88
4
75
42
4
4
50
1.40
4147780--4147905
61
2.1
58
84
7
155
51
4
0
42
1.28
4147899--4147945
13
3.6
13
76
18
53
48
2
0
48
1.13
4147788--4147909
57
2.1
57
83
7
145
54
4
0
40
1.22
4148250--4148300
25
2.0
27
88
7
79
31
17
7
43
1.78
4150595--4150737
73
2.0
73
88
5
218
55
13
13
17
1.70
4150930--4151016
43
2.0
43
82
4
104
34
26
16
22
1.95
4169738--4170610
187
4.7
187
97
0
1590
27
18
30
24
1.98
4176392--4176485
29
3.1
29
70
19
82
39
5
4
51
1.44
4181154--4181292
48
2.9
48
90
0
215
25
27
18
28
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284