genome.fa.s9.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Length:  95480121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   

This is table  110  of  284  ( 34012 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36122443--36122615	46	3.7	46	76	10	190	22	20	27	29	1.98
36122440--36122610	93	1.8	93	91	0	279	22	20	28	28	1.98
36122840--36122877	19	2.0	20	85	15	53	36	0	23	39	1.55
36129801--36129973	46	3.7	46	79	10	199	21	20	28	29	1.98
36129798--36129968	93	1.8	93	92	0	288	21	20	29	28	1.98
36130198--36130235	19	2.0	20	85	15	53	36	0	23	39	1.55
36132917--36132973	28	2.1	27	90	3	87	17	24	24	33	1.96
36134796--36134838	17	2.6	16	85	7	50	39	0	4	55	1.20
36137953--36138036	43	2.1	40	82	14	102	57	10	2	29	1.46
36147873--36148019	68	2.2	68	98	0	285	31	15	29	23	1.95
36154939--36155122	68	2.7	66	89	5	235	33	14	27	23	1.94
36155068--36155196	66	1.9	67	81	10	154	33	14	31	20	1.93
36158312--36158338	12	2.2	12	100	0	54	14	22	33	29	1.94
36159760--36159869	56	2.0	55	82	10	134	25	13	27	33	1.93
36161909--36162147	27	8.9	27	86	0	280	23	12	20	42	1.87
36163896--36163978	41	2.0	41	100	0	166	19	7	28	44	1.77
36169622--36169886	40	6.7	40	87	4	340	25	21	26	26	1.99
36169624--36169919	159	1.9	159	81	8	361	26	20	27	26	1.99
36177665--36177848	40	4.6	41	79	12	190	25	22	26	25	2.00
36177717--36177881	79	2.1	79	80	8	176	26	21	26	25	1.99
36181624--36181662	6	6.3	6	85	5	51	79	0	5	15	0.90
36181624--36181662	19	2.1	19	90	0	60	79	0	5	15	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36196769--36197118	27	12.9	27	74	7	219	38	20	11	30	1.87
36196765--36197061	55	5.5	53	73	7	220	38	20	10	30	1.87
36196763--36197061	82	3.7	80	76	6	244	37	20	10	30	1.87
36196769--36197088	109	3.0	108	78	6	299	38	19	10	30	1.86
36196905--36197089	82	2.3	81	81	5	194	40	20	10	28	1.86
36204537--36205559	40	25.6	40	97	0	1845	24	20	27	27	1.99
36207104--36207137	17	1.9	18	88	5	52	38	5	5	50	1.51
36209297--36209398	24	4.2	24	91	0	159	36	3	40	19	1.70
36210806--36210915	54	2.1	53	89	1	166	18	22	22	36	1.95
36210806--36210915	27	4.1	26	85	8	132	18	22	22	36	1.95
36219903--36219928	13	2.0	13	100	0	52	30	0	7	61	1.24
36227566--36227591	13	2.0	13	100	0	52	30	0	7	61	1.24
36229546--36229668	61	2.0	61	98	0	237	44	13	17	23	1.85
36232475--36234164	562	3.0	562	96	0	3076	40	14	12	33	1.83
36234392--36234419	14	2.0	14	100	0	56	35	21	7	35	1.81
36235059--36235142	43	2.0	42	88	2	123	30	21	21	26	1.98
36235309--36235360	27	1.9	27	84	7	70	26	21	19	32	1.97
36235342--36235562	27	8.3	26	82	3	219	34	16	16	32	1.91
36235329--36235562	54	4.4	54	82	3	278	33	17	15	32	1.92
36235329--36235562	53	4.4	53	83	3	283	33	17	15	32	1.92
36237872--36237933	28	2.3	27	80	8	72	35	24	22	17	1.95
36245797--36245834	20	2.0	19	85	10	51	36	10	18	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36245877--36245971	25	3.8	25	92	2	156	24	28	25	22	1.99
36246191--36246269	31	2.5	31	91	0	122	30	18	27	22	1.98
36248973--36249036	28	2.3	27	79	12	69	42	25	20	12	1.87
36252438--36252519	41	2.0	41	97	0	155	35	21	10	31	1.89
36252528--36252682	43	3.6	43	85	8	185	34	25	15	25	1.95
36263060--36263284	49	4.5	50	81	4	258	25	17	27	29	1.97
36265513--36265695	79	2.3	80	84	7	230	26	27	21	24	1.99
36265492--36265695	40	5.1	40	81	8	238	25	27	21	24	1.99
36269320--36269364	15	2.9	15	86	3	63	17	15	13	53	1.73
36271856--36272097	49	4.9	50	80	4	274	26	17	26	29	1.98
36271856--36272133	150	1.9	150	86	3	398	26	17	26	29	1.97
36274050--36274092	20	2.1	21	83	12	54	32	2	13	51	1.54
36278232--36278283	22	2.4	22	83	6	61	32	5	25	36	1.80
36278533--36278569	10	3.9	9	86	13	56	54	24	0	21	1.45
36278533--36278569	19	1.9	19	89	10	58	54	24	0	21	1.45
36278561--36278651	41	2.2	39	81	14	96	50	15	3	30	1.60
36278673--36278711	19	2.1	19	95	0	69	51	10	10	28	1.68
36278663--36278780	54	2.2	54	93	0	200	40	14	11	33	1.82
36281104--36281220	46	2.5	46	84	6	148	27	19	29	23	1.98
36281104--36281252	46	3.2	45	76	12	140	28	18	28	24	1.98
36282387--36282427	22	1.9	22	90	5	66	12	43	26	17	1.84
36292937--36293112	27	6.5	27	83	3	201	27	14	27	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36292938--36293093	82	1.9	81	86	3	224	27	15	28	28	1.96
36292934--36293112	82	2.2	81	81	3	216	27	15	27	29	1.96
36301415--36301586	46	3.7	46	75	14	183	25	20	26	27	1.99
36320940--36321068	42	3.0	41	81	10	161	28	13	26	31	1.94
36320940--36321061	43	2.9	41	82	11	156	29	14	25	30	1.95
36329704--36329743	16	2.5	16	95	0	71	15	30	22	32	1.94
36329981--36330955	49	19.8	49	93	1	1617	29	26	17	26	1.98
36330699--36330777	26	3.2	26	60	23	60	30	26	16	26	1.97
36331610--36331670	30	2.0	30	84	6	79	29	26	6	37	1.81
36333718--36333756	15	2.5	15	91	4	60	56	15	12	15	1.68
36336236--36336274	16	2.4	17	87	12	64	17	28	20	33	1.96
36336512--36336756	49	4.9	49	82	3	310	28	25	18	26	1.98
36337405--36337464	30	2.0	30	87	6	86	28	26	8	36	1.85
36344820--36345001	79	2.3	81	83	7	230	25	28	21	24	1.99
36344820--36345001	40	4.6	40	84	6	228	25	28	21	24	1.99
36347656--36347827	46	3.7	44	76	16	145	28	20	28	22	1.99
36350197--36350475	48	5.8	48	86	0	353	28	30	16	24	1.96
36352687--36353029	39	8.7	39	86	1	479	27	27	24	20	1.99
36352687--36353029	79	4.4	79	85	2	469	27	27	24	20	1.99
36352662--36353013	118	3.0	118	94	0	596	27	27	24	20	1.99
36352650--36353029	157	2.4	157	88	1	537	28	27	23	20	1.99
36359084--36359147	31	2.1	31	93	0	110	37	21	10	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36359177--36359203	8	3.4	8	100	0	54	51	11	25	11	1.70
36361078--36361293	108	2.0	108	98	0	414	24	17	17	41	1.89
36363263--36363373	45	2.5	45	84	0	141	45	9	19	26	1.80
36363296--36363384	45	2.0	45	86	0	124	42	10	22	24	1.84
36366262--36366301	18	2.2	19	86	4	55	32	0	2	65	1.06
36369084--36369110	11	2.5	11	100	0	54	25	7	0	66	1.17
36370029--36370115	44	2.0	44	84	4	113	40	9	17	33	1.81
36370818--36370857	15	2.6	16	84	15	57	42	0	0	57	0.98
36378452--36378478	13	2.1	13	100	0	54	29	0	22	48	1.51
36382325--36382528	53	3.8	53	76	5	203	37	18	23	20	1.94
36386118--36386196	37	2.1	37	88	0	113	24	17	31	26	1.97
36398581--36398624	14	3.0	14	80	6	52	47	0	6	45	1.29
36399939--36399963	13	1.9	13	100	0	50	24	0	20	56	1.43
36405228--36405380	49	3.2	49	66	20	135	33	8	11	45	1.71
36405204--36405382	92	2.0	87	91	6	288	33	9	11	45	1.72
36408619--36408736	57	2.1	57	85	6	159	31	13	16	38	1.87
36413907--36414057	43	3.5	42	77	8	135	30	15	23	30	1.95
36415995--36416073	31	2.5	31	93	0	131	27	24	18	29	1.98
36416101--36416188	42	2.1	42	85	4	115	36	19	12	31	1.89
36416333--36416456	26	4.8	26	88	1	187	27	22	22	27	1.99
36416333--36416456	52	2.4	52	95	1	223	27	22	22	27	1.99
36417257--36417321	27	2.4	27	84	0	85	20	26	16	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36417374--36417621	27	9.1	27	78	8	135	32	8	19	39	1.82
36417351--36417589	54	4.4	54	77	8	232	30	8	19	41	1.82
36417581--36417711	27	4.9	27	88	3	183	38	7	23	29	1.83
36417545--36417724	81	2.2	81	74	0	180	34	7	23	35	1.82
36420046--36420120	31	2.4	31	95	0	132	26	24	18	30	1.98
36420144--36420235	42	2.2	42	86	3	123	33	22	14	29	1.93
36420379--36420527	26	5.8	26	88	0	221	26	22	24	26	2.00
36420379--36420527	52	2.9	52	93	2	257	26	22	24	26	2.00
36421330--36421423	27	3.5	26	80	9	100	20	21	21	37	1.95
36421479--36421852	27	13.8	27	81	6	204	32	7	21	37	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284